Wall clock time and date at job start Sun Mar 29 2020 22:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31785 * 119.08354 * 2 1 4 4 C 1.32549 * 121.01119 * 180.02562 * 3 2 1 5 5 C 1.38114 * 119.19804 * 359.74248 * 4 3 2 6 6 C 1.39623 * 118.33437 * 0.51985 * 5 4 3 7 7 N 1.38542 * 120.53478 * 179.76064 * 6 5 4 8 8 C 1.46499 * 120.00283 * 190.94441 * 7 6 5 9 9 C 1.46504 * 119.99797 * 10.94371 * 7 6 5 10 10 H 1.09000 * 109.47201 * 357.87553 * 9 7 6 11 11 C 1.53005 * 109.46723 * 117.87198 * 9 7 6 12 12 C 1.50693 * 109.47228 * 237.87379 * 9 7 6 13 13 H 1.08007 * 119.99688 * 354.29811 * 12 9 7 14 14 C 1.37871 * 120.00133 * 174.30036 * 12 9 7 15 15 N 1.31515 * 120.00160 * 0.92921 * 14 12 9 16 16 Si 1.86799 * 120.00228 * 180.92654 * 14 12 9 17 17 H 1.48497 * 109.47251 * 265.01125 * 16 14 12 18 18 H 1.48506 * 109.47147 * 25.00754 * 16 14 12 19 19 H 1.48501 * 109.47557 * 145.00697 * 16 14 12 20 20 N 1.31747 * 119.08300 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.47138 * 269.97739 * 1 2 3 22 22 H 1.09004 * 109.47194 * 29.98305 * 1 2 3 23 23 H 1.09005 * 109.46803 * 149.98149 * 1 2 3 24 24 H 1.08005 * 120.39981 * 179.97438 * 4 3 2 25 25 H 1.07997 * 120.83213 * 180.25198 * 5 4 3 26 26 H 1.09001 * 109.46874 * 270.00257 * 8 7 6 27 27 H 1.08999 * 109.46832 * 30.00077 * 8 7 6 28 28 H 1.08998 * 109.47307 * 149.99626 * 8 7 6 29 29 H 1.08995 * 109.47362 * 307.49304 * 11 9 7 30 30 H 1.09000 * 109.46702 * 67.49826 * 11 9 7 31 31 H 1.09005 * 109.46639 * 187.49276 * 11 9 7 32 32 H 0.97000 * 120.00546 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1517 0.0000 4 6 3.4723 1.1963 -0.0005 5 6 4.1863 0.0140 0.0044 6 6 3.4768 -1.1886 -0.0015 7 7 4.1470 -2.4011 -0.0019 8 6 3.4120 -3.6442 -0.2488 9 6 5.5906 -2.4403 0.2445 10 1 5.9657 -1.4244 0.3684 11 6 5.8693 -3.2454 1.5155 12 6 6.2823 -3.0921 -0.9248 13 1 5.6992 -3.5247 -1.7245 14 6 7.6594 -3.1364 -0.9739 15 7 8.3692 -2.6261 0.0086 16 14 8.5172 -3.9214 -2.4359 17 1 8.8363 -5.3371 -2.1210 18 1 7.6244 -3.8671 -3.6214 19 1 9.7728 -3.1841 -2.7277 20 7 2.1474 -1.1514 -0.0005 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3634 0.8902 -0.5136 23 1 -0.3633 -0.8899 -0.5142 24 1 3.9872 2.1457 -0.0009 25 1 5.2662 0.0195 0.0082 26 1 3.0550 -4.0493 0.6980 27 1 2.5623 -3.4405 -0.9004 28 1 4.0720 -4.3674 -0.7279 29 1 5.2647 -2.8538 2.3335 30 1 5.6164 -4.2919 1.3453 31 1 6.9254 -3.1639 1.7728 32 1 9.3381 -2.6575 -0.0257 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096080.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:47 Heat of formation + Delta-G solvation = 35.127354 kcal Electronic energy + Delta-G solvation = -14994.384559 eV Core-core repulsion = 12568.565776 eV Total energy + Delta-G solvation = -2425.818784 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.76157 -38.55195 -35.20926 -34.15596 -33.14222 -31.03202 -29.38518 -27.42817 -27.31222 -24.16133 -23.82486 -21.38108 -18.71398 -18.27468 -18.10314 -16.76592 -16.21234 -15.94853 -15.60432 -15.12815 -14.83563 -14.25059 -14.04173 -13.60323 -13.36045 -13.12953 -13.07197 -12.95075 -12.72150 -12.61405 -12.35748 -12.15090 -11.87549 -11.47220 -11.08940 -10.57671 -10.51786 -10.05590 -8.66369 -8.17556 -6.34152 0.23106 0.52829 1.40197 1.42784 1.51820 2.11461 2.42100 3.00906 3.10417 3.32489 3.52068 3.94462 4.38214 4.46374 4.56691 4.67056 4.69140 4.75633 4.81805 4.85464 4.93519 4.96374 5.01913 5.14742 5.35534 5.56252 5.60543 5.72002 5.95351 6.08745 6.51544 6.64723 6.79504 7.34823 7.46089 8.85152 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040703 B = 0.007573 C = 0.007293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.746162 B = 3696.401940 C = 3838.387785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.335 3.665 3 N -0.587 5.587 4 C 0.175 3.825 5 C -0.316 4.316 6 C 0.424 3.576 7 N -0.583 5.583 8 C 0.109 3.891 9 C 0.269 3.731 10 H 0.038 0.962 11 C -0.129 4.129 12 C -0.542 4.542 13 H 0.056 0.944 14 C 0.026 3.974 15 N -0.912 5.912 16 Si 0.958 3.042 17 H -0.273 1.273 18 H -0.274 1.274 19 H -0.282 1.282 20 N -0.599 5.599 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.088 0.912 24 H 0.192 0.808 25 H 0.134 0.866 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.438 2.878 0.123 9.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.066 3.934 3 N -0.308 5.308 4 C 0.015 3.985 5 C -0.344 4.344 6 C 0.180 3.820 7 N -0.292 5.292 8 C -0.034 4.034 9 C 0.168 3.832 10 H 0.056 0.944 11 C -0.188 4.188 12 C -0.581 4.581 13 H 0.074 0.926 14 C -0.175 4.175 15 N -0.551 5.551 16 Si 0.784 3.216 17 H -0.199 1.199 18 H -0.199 1.199 19 H -0.207 1.207 20 N -0.327 5.327 21 H 0.114 0.886 22 H 0.115 0.885 23 H 0.106 0.894 24 H 0.209 0.791 25 H 0.152 0.848 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.064 2.684 0.184 10.417 hybrid contribution 1.943 -0.538 -0.579 2.098 sum -8.121 2.146 -0.395 8.409 Atomic orbital electron populations 1.20595 0.83411 1.04615 1.04588 1.23725 0.99253 0.82674 0.87709 1.68305 1.10061 1.29836 1.22614 1.23237 0.89432 0.98245 0.87585 1.22382 1.02571 0.93593 1.15896 1.18953 0.88687 0.87423 0.86965 1.47109 1.08693 1.03043 1.70362 1.21425 0.95894 0.85691 1.00358 1.18827 0.73746 0.96893 0.93735 0.94419 1.21895 1.01335 0.99151 0.96447 1.21522 0.91781 1.38595 1.06165 0.92626 1.25571 0.97772 0.95584 0.98580 1.69994 1.06728 1.45590 1.32755 0.85537 0.77907 0.78593 0.79555 1.19895 1.19896 1.20708 1.67874 1.07403 1.31833 1.25546 0.88590 0.88498 0.89358 0.79094 0.84783 0.93308 0.91586 0.91340 0.95738 0.94193 0.91735 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.32 71.24 0.73 -0.95 16 2 C 0.34 11.30 7.64 138.77 1.06 12.36 16 3 N -0.59 -19.98 10.33 -188.11 -1.94 -21.93 16 4 C 0.18 5.86 11.29 84.56 0.95 6.81 16 5 C -0.32 -12.53 9.35 22.57 0.21 -12.32 16 6 C 0.42 17.88 7.33 133.16 0.98 18.85 16 7 N -0.58 -25.47 2.86 -708.31 -2.02 -27.49 16 8 C 0.11 4.15 9.61 127.77 1.23 5.37 16 9 C 0.27 13.04 2.47 44.24 0.11 13.15 16 10 H 0.04 1.98 5.43 -2.39 -0.01 1.97 16 11 C -0.13 -5.97 8.87 71.98 0.64 -5.33 16 12 C -0.54 -28.16 8.00 25.60 0.20 -27.96 16 13 H 0.06 2.91 6.98 -2.91 -0.02 2.89 16 14 C 0.03 1.33 5.34 84.65 0.45 1.79 16 15 N -0.91 -49.18 11.79 21.44 0.25 -48.93 16 16 Si 0.96 41.60 29.54 68.60 2.03 43.63 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 20 N -0.60 -23.13 9.32 -185.44 -1.73 -24.86 16 21 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 23 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 24 H 0.19 4.82 8.06 -2.91 -0.02 4.79 16 25 H 0.13 5.61 5.98 -2.91 -0.02 5.59 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 27 H 0.07 2.37 7.60 -2.39 -0.02 2.35 16 28 H 0.07 2.64 6.75 -2.39 -0.02 2.63 16 29 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 1.76 7.95 -2.39 -0.02 1.74 16 31 H 0.06 3.22 6.69 -2.38 -0.02 3.20 16 32 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -59.00 269.85 4.27 -54.73 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.11 Total: 13.06 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 6.57 Total: 11.78 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -5.44 Total: -123.20 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -59.00 4.27 -54.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096080.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.862 kcal (2) G-P(sol) polarization free energy of solvation -59.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds