Wall clock time and date at job start Sun Mar 29 2020 22:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31791 * 119.08256 * 2 1 4 4 C 1.32538 * 121.01063 * 179.97438 * 3 2 1 5 5 C 1.38124 * 119.20155 * 359.74451 * 4 3 2 6 6 C 1.39632 * 118.32744 * 0.52102 * 5 4 3 7 7 N 1.38547 * 120.52831 * 179.75837 * 6 5 4 8 8 C 1.46501 * 119.99527 * 189.06720 * 7 6 5 9 9 C 1.46499 * 120.00110 * 9.06485 * 7 6 5 10 10 H 1.08999 * 109.47050 * 5.78167 * 9 7 6 11 11 C 1.52999 * 109.47251 * 245.77595 * 9 7 6 12 12 C 1.50702 * 109.46933 * 125.77436 * 9 7 6 13 13 H 1.08004 * 119.99953 * 5.78858 * 12 9 7 14 14 C 1.37878 * 120.00172 * 185.77918 * 12 9 7 15 15 N 1.31509 * 120.00377 * 195.57140 * 14 12 9 16 16 Si 1.86801 * 119.99424 * 15.57853 * 14 12 9 17 17 H 1.48508 * 109.46727 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47458 * 299.99178 * 16 14 12 19 19 H 1.48505 * 109.47210 * 59.99946 * 16 14 12 20 20 N 1.31743 * 119.08148 * 180.02562 * 2 1 3 21 21 H 1.08992 * 109.47140 * 269.97491 * 1 2 3 22 22 H 1.08999 * 109.46815 * 29.98268 * 1 2 3 23 23 H 1.08999 * 109.46926 * 149.97542 * 1 2 3 24 24 H 1.08001 * 120.40551 * 180.02562 * 4 3 2 25 25 H 1.07990 * 120.83789 * 180.24977 * 5 4 3 26 26 H 1.09003 * 109.47000 * 269.99788 * 8 7 6 27 27 H 1.09000 * 109.47556 * 29.99921 * 8 7 6 28 28 H 1.09000 * 109.46929 * 150.00191 * 8 7 6 29 29 H 1.09002 * 109.46704 * 63.50795 * 11 9 7 30 30 H 1.08995 * 109.46765 * 183.50931 * 11 9 7 31 31 H 1.08996 * 109.47033 * 303.51119 * 11 9 7 32 32 H 0.97001 * 120.00124 * 354.92814 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1477 1.1517 0.0000 4 6 3.4723 1.1963 0.0005 5 6 4.1864 0.0140 0.0064 6 6 3.4768 -1.1886 0.0005 7 7 4.1470 -2.4012 0.0010 8 6 3.4057 -3.6478 -0.2051 9 6 5.5970 -2.4366 0.2076 10 1 5.9549 -1.4346 0.4438 11 6 6.2816 -2.9358 -1.0664 12 6 5.9191 -3.3670 1.3486 13 1 5.1349 -3.9515 1.8067 14 6 7.2150 -3.4721 1.8076 15 7 7.5607 -4.4820 2.5757 16 14 8.4796 -2.1797 1.3384 17 1 9.7869 -2.5194 1.9558 18 1 8.6244 -2.1421 -0.1390 19 1 8.0329 -0.8501 1.8262 20 7 2.1474 -1.1513 -0.0005 21 1 -0.3633 -0.0005 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 3.9873 2.1457 0.0009 25 1 5.2662 0.0195 0.0110 26 1 3.0754 -4.0376 0.7577 27 1 2.5380 -3.4546 -0.8359 28 1 4.0522 -4.3789 -0.6906 29 1 6.1000 -2.2298 -1.8768 30 1 7.3542 -3.0215 -0.8926 31 1 5.8782 -3.9115 -1.3372 32 1 6.8890 -5.1123 2.8797 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096082.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:50 Heat of formation + Delta-G solvation = 53.790751 kcal Electronic energy + Delta-G solvation = -15063.088213 eV Core-core repulsion = 12638.078735 eV Total energy + Delta-G solvation = -2425.009478 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.43427 -37.11296 -33.46872 -32.83952 -31.73385 -29.87947 -28.22826 -26.07324 -24.92385 -22.61735 -22.45173 -19.59125 -17.71718 -16.91999 -16.82022 -14.95355 -14.74168 -14.67185 -13.97832 -13.69420 -13.38863 -12.85483 -12.70163 -12.38360 -12.21366 -12.03318 -11.83300 -11.53636 -11.34746 -10.64056 -10.47837 -10.34744 -9.90752 -9.86469 -9.32787 -9.03906 -8.69684 -8.44736 -7.24573 -6.58990 -4.28840 1.52893 1.91572 3.21995 3.29350 3.42798 3.57777 4.30948 4.34005 4.48349 4.75864 5.06845 5.27298 5.61598 5.72636 5.74181 5.75624 5.87014 6.05137 6.09412 6.13308 6.24629 6.31826 6.38172 6.47621 6.66288 6.88476 7.02008 7.32299 7.62453 7.95939 8.10418 8.21875 8.69376 8.82283 9.41239 10.75338 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038391 B = 0.008533 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.171190 B = 3280.740131 C = 3614.328856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.349 3.651 3 N -0.582 5.582 4 C 0.168 3.832 5 C -0.302 4.302 6 C 0.444 3.556 7 N -0.564 5.564 8 C 0.111 3.889 9 C 0.243 3.757 10 H 0.044 0.956 11 C -0.167 4.167 12 C -0.614 4.614 13 H 0.064 0.936 14 C 0.036 3.964 15 N -0.897 5.897 16 Si 1.038 2.962 17 H -0.281 1.281 18 H -0.270 1.270 19 H -0.280 1.280 20 N -0.587 5.587 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.158 0.842 25 H 0.141 0.859 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.148 7.272 -6.571 12.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.079 3.921 3 N -0.304 5.304 4 C 0.008 3.992 5 C -0.331 4.331 6 C 0.199 3.801 7 N -0.271 5.271 8 C -0.033 4.033 9 C 0.141 3.859 10 H 0.061 0.939 11 C -0.225 4.225 12 C -0.652 4.652 13 H 0.082 0.918 14 C -0.171 4.171 15 N -0.530 5.530 16 Si 0.866 3.134 17 H -0.206 1.206 18 H -0.196 1.196 19 H -0.206 1.206 20 N -0.314 5.314 21 H 0.098 0.902 22 H 0.098 0.902 23 H 0.097 0.903 24 H 0.175 0.825 25 H 0.158 0.842 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.333 7.411 -6.417 11.671 hybrid contribution -0.567 -0.568 0.050 0.804 sum -6.900 6.843 -6.366 11.617 Atomic orbital electron populations 1.20454 0.86704 1.03313 1.03254 1.22778 0.97284 0.83162 0.88859 1.68163 1.09896 1.29762 1.22552 1.22686 0.89538 0.97508 0.89430 1.22233 1.02472 0.93063 1.15294 1.18679 0.88010 0.87115 0.86296 1.46921 1.08202 1.02037 1.69986 1.21354 0.95538 0.85860 1.00516 1.19341 0.74162 0.97963 0.94423 0.93897 1.22600 1.01883 1.00325 0.97691 1.22185 0.96935 1.27676 1.18415 0.91824 1.25717 0.97957 0.98370 0.95009 1.70848 1.36329 1.11339 1.34488 0.84162 0.76579 0.75795 0.76859 1.20598 1.19624 1.20570 1.67801 1.07935 1.30813 1.24831 0.90228 0.90154 0.90263 0.82513 0.84169 0.93632 0.92136 0.91474 0.95305 0.91241 0.93025 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.32 36.01 0.37 -0.62 16 2 C 0.35 6.07 7.64 -157.24 -1.20 4.87 16 3 N -0.58 -10.13 10.33 -10.81 -0.11 -10.24 16 4 C 0.17 2.77 11.29 -17.29 -0.20 2.58 16 5 C -0.30 -5.62 9.31 -39.10 -0.36 -5.99 16 6 C 0.44 9.14 7.35 -154.77 -1.14 8.00 16 7 N -0.56 -12.07 2.86 -175.23 -0.50 -12.57 16 8 C 0.11 2.14 9.37 59.85 0.56 2.70 16 9 C 0.24 5.53 2.09 -69.08 -0.14 5.38 16 10 H 0.04 0.98 4.21 -51.93 -0.22 0.76 16 11 C -0.17 -3.44 8.99 37.16 0.33 -3.10 16 12 C -0.61 -16.39 8.64 -34.44 -0.30 -16.69 16 13 H 0.06 1.86 7.44 -52.48 -0.39 1.47 16 14 C 0.04 0.99 5.34 -17.82 -0.10 0.89 16 15 N -0.90 -26.37 13.70 55.43 0.76 -25.61 16 16 Si 1.04 23.43 26.28 -169.99 -4.47 18.96 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -5.49 5.58 56.52 0.32 -5.17 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 N -0.59 -11.47 9.28 -9.96 -0.09 -11.57 16 21 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.16 1.98 8.06 -52.49 -0.42 1.55 16 25 H 0.14 2.51 6.04 -52.49 -0.32 2.19 16 26 H 0.05 0.92 7.97 -51.93 -0.41 0.50 16 27 H 0.06 1.07 7.56 -51.93 -0.39 0.67 16 28 H 0.07 1.26 6.69 -51.93 -0.35 0.91 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.46 4.66 -51.93 -0.24 1.22 16 31 H 0.05 1.04 6.80 -51.93 -0.35 0.69 16 32 H 0.27 7.95 8.73 -40.82 -0.36 7.59 16 LS Contribution 263.30 15.07 3.97 3.97 Total: -1.00 -30.10 263.30 -6.64 -36.74 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.03 Total: 2.29 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.17 Total: -1.98 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.05 Total: -59.98 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.47 Total: 18.96 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.10 -6.64 -36.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096082.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.533 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds