Wall clock time and date at job start Sun Mar 29 2020 22:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31791 * 119.08256 * 2 1 4 4 C 1.32538 * 121.01063 * 179.97438 * 3 2 1 5 5 C 1.38124 * 119.20155 * 359.74451 * 4 3 2 6 6 C 1.39632 * 118.32744 * 0.52102 * 5 4 3 7 7 N 1.38547 * 120.52831 * 179.75837 * 6 5 4 8 8 C 1.46501 * 119.99527 * 189.06720 * 7 6 5 9 9 C 1.46499 * 120.00110 * 9.06485 * 7 6 5 10 10 H 1.08999 * 109.47050 * 5.78167 * 9 7 6 11 11 C 1.52999 * 109.47251 * 245.77595 * 9 7 6 12 12 C 1.50702 * 109.46933 * 125.77436 * 9 7 6 13 13 H 1.08004 * 119.99953 * 5.78858 * 12 9 7 14 14 C 1.37878 * 120.00172 * 185.77918 * 12 9 7 15 15 N 1.31509 * 120.00377 * 195.57140 * 14 12 9 16 16 Si 1.86801 * 119.99424 * 15.57853 * 14 12 9 17 17 H 1.48508 * 109.46727 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47458 * 299.99178 * 16 14 12 19 19 H 1.48505 * 109.47210 * 59.99946 * 16 14 12 20 20 N 1.31743 * 119.08148 * 180.02562 * 2 1 3 21 21 H 1.08992 * 109.47140 * 269.97491 * 1 2 3 22 22 H 1.08999 * 109.46815 * 29.98268 * 1 2 3 23 23 H 1.08999 * 109.46926 * 149.97542 * 1 2 3 24 24 H 1.08001 * 120.40551 * 180.02562 * 4 3 2 25 25 H 1.07990 * 120.83789 * 180.24977 * 5 4 3 26 26 H 1.09003 * 109.47000 * 269.99788 * 8 7 6 27 27 H 1.09000 * 109.47556 * 29.99921 * 8 7 6 28 28 H 1.09000 * 109.46929 * 150.00191 * 8 7 6 29 29 H 1.09002 * 109.46704 * 63.50795 * 11 9 7 30 30 H 1.08995 * 109.46765 * 183.50931 * 11 9 7 31 31 H 1.08996 * 109.47033 * 303.51119 * 11 9 7 32 32 H 0.97001 * 120.00124 * 354.92814 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1477 1.1517 0.0000 4 6 3.4723 1.1963 0.0005 5 6 4.1864 0.0140 0.0064 6 6 3.4768 -1.1886 0.0005 7 7 4.1470 -2.4012 0.0010 8 6 3.4057 -3.6478 -0.2051 9 6 5.5970 -2.4366 0.2076 10 1 5.9549 -1.4346 0.4438 11 6 6.2816 -2.9358 -1.0664 12 6 5.9191 -3.3670 1.3486 13 1 5.1349 -3.9515 1.8067 14 6 7.2150 -3.4721 1.8076 15 7 7.5607 -4.4820 2.5757 16 14 8.4796 -2.1797 1.3384 17 1 9.7869 -2.5194 1.9558 18 1 8.6244 -2.1421 -0.1390 19 1 8.0329 -0.8501 1.8262 20 7 2.1474 -1.1513 -0.0005 21 1 -0.3633 -0.0005 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 3.9873 2.1457 0.0009 25 1 5.2662 0.0195 0.0110 26 1 3.0754 -4.0376 0.7577 27 1 2.5380 -3.4546 -0.8359 28 1 4.0522 -4.3789 -0.6906 29 1 6.1000 -2.2298 -1.8768 30 1 7.3542 -3.0215 -0.8926 31 1 5.8782 -3.9115 -1.3372 32 1 6.8890 -5.1123 2.8797 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096082.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:50 Heat of formation + Delta-G solvation = 34.902663 kcal Electronic energy + Delta-G solvation = -15063.907262 eV Core-core repulsion = 12638.078735 eV Total energy + Delta-G solvation = -2425.828527 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.83223 -38.71925 -35.27702 -34.24125 -33.34136 -31.55318 -29.46118 -27.56113 -26.86012 -24.15638 -23.84905 -21.28709 -19.63914 -18.41581 -18.34743 -16.40105 -16.33363 -16.06152 -15.56135 -15.20912 -15.03108 -14.42504 -14.16832 -13.97813 -13.51629 -13.39068 -13.25546 -13.15649 -12.90479 -12.38517 -12.06093 -11.86832 -11.60931 -11.45647 -11.08994 -10.60983 -10.48557 -10.10103 -9.02044 -8.56975 -6.46785 0.18233 0.48422 1.44731 1.52978 1.68764 2.02929 2.45279 2.96965 3.00273 3.27180 3.47214 3.85781 4.20284 4.33588 4.46571 4.51532 4.61228 4.63884 4.68825 4.72658 4.77643 4.82974 4.89314 5.01780 5.10825 5.38478 5.56401 5.70624 5.81261 5.96080 6.36465 6.49084 6.64342 7.32052 7.41245 8.56807 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038391 B = 0.008533 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.171190 B = 3280.740131 C = 3614.328856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.337 3.663 3 N -0.585 5.585 4 C 0.178 3.822 5 C -0.318 4.318 6 C 0.421 3.579 7 N -0.581 5.581 8 C 0.118 3.882 9 C 0.247 3.753 10 H 0.052 0.948 11 C -0.160 4.160 12 C -0.614 4.614 13 H 0.020 0.980 14 C -0.013 4.013 15 N -0.932 5.932 16 Si 1.074 2.926 17 H -0.289 1.289 18 H -0.229 1.229 19 H -0.260 1.260 20 N -0.604 5.604 21 H 0.092 0.908 22 H 0.100 0.900 23 H 0.087 0.913 24 H 0.199 0.801 25 H 0.148 0.852 26 H 0.024 0.976 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.367 9.901 -8.146 14.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.068 3.932 3 N -0.306 5.306 4 C 0.018 3.982 5 C -0.346 4.346 6 C 0.178 3.822 7 N -0.290 5.290 8 C -0.025 4.025 9 C 0.144 3.856 10 H 0.070 0.930 11 C -0.218 4.218 12 C -0.652 4.652 13 H 0.038 0.962 14 C -0.213 4.213 15 N -0.567 5.567 16 Si 0.893 3.107 17 H -0.215 1.215 18 H -0.153 1.153 19 H -0.185 1.185 20 N -0.331 5.331 21 H 0.110 0.890 22 H 0.118 0.882 23 H 0.106 0.894 24 H 0.216 0.784 25 H 0.165 0.835 26 H 0.042 0.958 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.615 10.054 -8.012 14.458 hybrid contribution -0.671 -1.342 0.583 1.610 sum -7.287 8.712 -7.429 13.571 Atomic orbital electron populations 1.20602 0.83625 1.04721 1.04436 1.23681 0.99202 0.82635 0.87643 1.68315 1.10415 1.29585 1.22302 1.23360 0.89296 0.98497 0.87079 1.22424 1.02986 0.93059 1.16150 1.19003 0.88813 0.87332 0.87094 1.46833 1.07797 1.02881 1.71490 1.21277 0.95977 0.85609 0.99609 1.19161 0.75571 0.97139 0.93753 0.92996 1.22467 1.01244 1.00799 0.97286 1.22352 0.95891 1.27496 1.19447 0.96189 1.27210 1.00608 0.99194 0.94239 1.70991 1.35954 1.12772 1.36949 0.83785 0.73693 0.73914 0.79266 1.21467 1.15279 1.18466 1.67847 1.07762 1.32094 1.25411 0.88978 0.88180 0.89422 0.78386 0.83488 0.95759 0.90526 0.91458 0.92571 0.91446 0.93437 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.70 10.32 71.24 0.74 -0.96 16 2 C 0.34 10.96 7.64 138.77 1.06 12.02 16 3 N -0.58 -18.56 10.33 -188.10 -1.94 -20.50 16 4 C 0.18 5.26 11.29 84.56 0.95 6.22 16 5 C -0.32 -11.05 9.31 22.58 0.21 -10.84 16 6 C 0.42 16.79 7.35 133.16 0.98 17.77 16 7 N -0.58 -24.62 2.86 -708.29 -2.02 -26.64 16 8 C 0.12 4.65 9.37 127.77 1.20 5.85 16 9 C 0.25 10.96 2.09 44.25 0.09 11.06 16 10 H 0.05 2.24 4.21 -2.39 -0.01 2.23 16 11 C -0.16 -6.25 8.99 71.98 0.65 -5.60 16 12 C -0.61 -33.47 8.64 25.60 0.22 -33.24 16 13 H 0.02 1.23 7.44 -2.91 -0.02 1.21 16 14 C -0.01 -0.74 5.34 84.66 0.45 -0.29 16 15 N -0.93 -56.58 13.70 21.45 0.29 -56.28 16 16 Si 1.07 45.72 26.28 68.60 1.80 47.52 16 17 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.23 -8.24 5.58 99.48 0.56 -7.68 16 19 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 20 N -0.60 -22.83 9.28 -185.42 -1.72 -24.55 16 21 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.20 4.04 8.06 -2.91 -0.02 4.02 16 25 H 0.15 4.82 6.04 -2.92 -0.02 4.80 16 26 H 0.02 1.02 7.97 -2.39 -0.02 1.00 16 27 H 0.08 2.70 7.56 -2.39 -0.02 2.68 16 28 H 0.07 2.57 6.69 -2.39 -0.02 2.55 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 2.64 4.66 -2.39 -0.01 2.63 16 31 H 0.05 1.86 6.80 -2.39 -0.02 1.85 16 32 H 0.25 15.67 8.73 -92.71 -0.81 14.86 16 Total: -1.00 -66.32 263.30 3.89 -62.44 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.93 Total: 16.05 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 6.55 Total: 1.97 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -5.39 Total: -127.98 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.80 Total: 47.52 kcal Total: -66.32 3.89 -62.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096082.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.338 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds