Wall clock time and date at job start Sun Mar 29 2020 22:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38121 * 120.40225 * 2 1 4 4 C 1.39624 * 118.33497 * 180.19542 * 3 2 1 5 5 N 1.38539 * 120.53003 * 179.80241 * 4 3 2 6 6 C 1.46497 * 119.99777 * 190.50564 * 5 4 3 7 7 C 1.46506 * 119.99963 * 10.78288 * 5 4 3 8 8 H 1.08997 * 109.47208 * 5.27314 * 7 5 4 9 9 C 1.52995 * 109.46842 * 125.27670 * 7 5 4 10 10 C 1.50702 * 109.46928 * 245.27351 * 7 5 4 11 11 H 1.08004 * 119.99924 * 0.02562 * 10 7 5 12 12 C 1.37871 * 119.99849 * 180.02562 * 10 7 5 13 13 N 1.31516 * 119.99912 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99936 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47218 * 90.00216 * 14 12 10 16 16 H 1.48502 * 109.47089 * 210.00166 * 14 12 10 17 17 H 1.48498 * 109.47155 * 329.99990 * 14 12 10 18 18 N 1.32987 * 118.93431 * 359.52694 * 4 3 2 19 19 C 1.31744 * 120.69292 * 0.25145 * 18 4 3 20 20 N 1.31794 * 121.82756 * 359.97438 * 19 18 4 21 21 H 1.09007 * 109.47318 * 270.28018 * 1 2 3 22 22 H 1.08995 * 109.47418 * 30.28103 * 1 2 3 23 23 H 1.08997 * 109.47270 * 150.28195 * 1 2 3 24 24 H 1.07998 * 120.83068 * 359.97438 * 3 2 1 25 25 H 1.09000 * 109.47553 * 270.27333 * 6 5 4 26 26 H 1.09001 * 109.47178 * 30.27789 * 6 5 4 27 27 H 1.09007 * 109.47024 * 150.27704 * 6 5 4 28 28 H 1.09001 * 109.47063 * 179.97438 * 9 7 5 29 29 H 1.09003 * 109.47675 * 299.99268 * 9 7 5 30 30 H 1.09007 * 109.47547 * 60.00003 * 9 7 5 31 31 H 0.97006 * 119.99327 * 179.97438 * 13 12 10 32 32 H 1.07992 * 119.09272 * 179.97438 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1409 -0.0042 5 7 4.3476 2.3081 -0.0085 6 6 5.7924 2.2527 -0.2442 7 6 3.6929 3.5971 0.2287 8 1 2.6452 3.4317 0.4795 9 6 4.3873 4.3163 1.3868 10 6 3.7842 4.4432 -1.0151 11 1 4.2799 4.0590 -1.8944 12 6 3.2349 5.7076 -1.0304 13 7 2.6317 6.1756 0.0405 14 14 3.3474 6.7562 -2.5723 15 1 2.1635 6.5013 -3.4317 16 1 3.3842 8.1915 -2.1933 17 1 4.5840 6.4093 -3.3177 18 7 4.2023 -0.0454 0.0016 19 6 3.4956 -1.1572 0.0062 20 7 2.1777 -1.1432 0.0057 21 1 -0.3634 0.0050 1.0277 22 1 -0.3634 0.8874 -0.5182 23 1 -0.3633 -0.8925 -0.5094 24 1 1.6862 2.1380 -0.0004 25 1 6.3115 2.1349 0.7070 26 1 6.0229 1.4063 -0.8911 27 1 6.1180 3.1759 -0.7238 28 1 3.9006 5.2755 1.5630 29 1 4.3213 3.7044 2.2865 30 1 5.4352 4.4817 1.1359 31 1 2.2456 7.0654 0.0297 32 1 4.0104 -2.1066 0.0104 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:53 Heat of formation + Delta-G solvation = 48.665031 kcal Electronic energy + Delta-G solvation = -15045.288244 eV Core-core repulsion = 12620.056498 eV Total energy + Delta-G solvation = -2425.231746 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.27568 -36.86613 -33.81547 -32.83436 -31.07317 -29.18589 -28.19391 -25.51619 -25.23063 -23.62982 -21.56862 -19.71913 -17.02570 -16.60869 -16.36741 -14.87279 -14.72277 -14.52613 -14.09496 -13.58415 -13.38281 -12.68288 -12.49773 -12.38936 -11.96564 -11.71187 -11.37125 -11.14884 -10.98132 -10.75831 -10.50774 -10.28242 -10.24042 -9.83287 -9.33033 -8.97841 -8.58353 -8.57582 -7.01642 -6.20712 -4.30674 1.68438 2.03763 3.19269 3.26562 3.29344 3.74954 4.28897 4.50313 4.66451 4.91962 5.09228 5.36880 5.66986 5.82511 5.83659 6.02121 6.13855 6.18569 6.21113 6.34733 6.45636 6.60125 6.73779 6.86046 6.98897 7.26201 7.37994 7.57807 7.80412 7.99853 8.18329 8.31550 8.72934 8.93650 9.37207 10.82646 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030953 B = 0.008647 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.372948 B = 3237.410464 C = 3619.183824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.184 3.816 3 C -0.285 4.285 4 C 0.441 3.559 5 N -0.571 5.571 6 C 0.105 3.895 7 C 0.265 3.735 8 H 0.053 0.947 9 C -0.149 4.149 10 C -0.529 4.529 11 H 0.061 0.939 12 C 0.067 3.933 13 N -0.888 5.888 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.274 1.274 18 N -0.596 5.596 19 C 0.328 3.672 20 N -0.585 5.585 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.147 0.853 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.012 0.988 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 -7.157 0.524 7.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.044 3.956 3 C -0.313 4.313 4 C 0.197 3.803 5 N -0.279 5.279 6 C -0.038 4.038 7 C 0.165 3.835 8 H 0.071 0.929 9 C -0.207 4.207 10 C -0.568 4.568 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.527 5.527 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.323 5.323 19 C 0.037 3.963 20 N -0.307 5.307 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.164 0.836 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.115 0.885 29 H 0.032 0.968 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.136 -7.556 0.596 7.580 hybrid contribution -0.220 1.457 -0.783 1.669 sum -0.085 -6.098 -0.187 6.102 Atomic orbital electron populations 1.20670 0.88939 1.03250 1.02893 1.21216 0.96704 0.87973 0.89658 1.22170 0.94123 1.00794 1.14220 1.18700 0.88512 0.86673 0.86417 1.47217 1.07104 1.04057 1.69484 1.21394 0.80610 1.02046 0.99769 1.19083 0.92885 0.76887 0.94684 0.92929 1.22117 0.99998 1.02719 0.95879 1.21361 1.37632 0.99657 0.98103 0.92043 1.24889 0.94699 0.97466 0.96563 1.69861 1.36800 1.18190 1.27800 0.86462 0.78645 0.79336 0.82824 1.20502 1.21019 1.19852 1.67965 1.41604 0.97954 1.24757 1.24364 0.86799 0.95586 0.89522 1.68140 1.09991 1.29994 1.22612 0.90453 0.90523 0.90707 0.83583 0.94335 0.92203 0.90862 0.88506 0.96847 0.94704 0.92494 0.80016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.21 36.00 0.37 -1.00 16 2 C 0.18 3.29 6.82 -82.33 -0.56 2.73 16 3 C -0.28 -5.72 8.98 -39.11 -0.35 -6.07 16 4 C 0.44 9.36 7.34 -154.78 -1.14 8.22 16 5 N -0.57 -12.43 2.86 -175.23 -0.50 -12.93 16 6 C 0.11 2.02 9.24 59.85 0.55 2.57 16 7 C 0.26 6.32 2.50 -69.08 -0.17 6.15 16 8 H 0.05 1.33 5.57 -51.93 -0.29 1.04 16 9 C -0.15 -3.41 8.88 37.16 0.33 -3.08 16 10 C -0.53 -13.63 8.08 -34.44 -0.28 -13.90 16 11 H 0.06 1.62 7.73 -52.48 -0.41 1.21 16 12 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 13 N -0.89 -23.56 11.32 55.43 0.63 -22.93 16 14 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 N -0.60 -11.71 9.42 -13.82 -0.13 -11.84 16 19 C 0.33 5.68 12.28 -92.20 -1.13 4.54 16 20 N -0.58 -10.49 10.37 -10.88 -0.11 -10.61 16 21 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.15 3.02 6.09 -52.49 -0.32 2.71 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.09 7.60 -51.93 -0.39 0.70 16 27 H 0.07 1.42 7.42 -51.92 -0.39 1.03 16 28 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.03 0.76 7.53 -51.93 -0.39 0.37 16 31 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.18 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 269.49 15.07 4.06 4.06 Total: -1.00 -27.87 269.49 -7.72 -35.59 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.17 Total: 1.58 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.48 Total: 1.79 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.12 Total: -58.30 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.87 -7.72 -35.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.252 kcal (2) G-P(sol) polarization free energy of solvation -27.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds