Wall clock time and date at job start Sun Mar 29 2020 22:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38121 * 120.40225 * 2 1 4 4 C 1.39624 * 118.33497 * 180.19542 * 3 2 1 5 5 N 1.38539 * 120.53003 * 179.80241 * 4 3 2 6 6 C 1.46497 * 119.99777 * 190.50564 * 5 4 3 7 7 C 1.46506 * 119.99963 * 10.78288 * 5 4 3 8 8 H 1.08997 * 109.47208 * 5.27314 * 7 5 4 9 9 C 1.52995 * 109.46842 * 125.27670 * 7 5 4 10 10 C 1.50702 * 109.46928 * 245.27351 * 7 5 4 11 11 H 1.08004 * 119.99924 * 0.02562 * 10 7 5 12 12 C 1.37871 * 119.99849 * 180.02562 * 10 7 5 13 13 N 1.31516 * 119.99912 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99936 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47218 * 90.00216 * 14 12 10 16 16 H 1.48502 * 109.47089 * 210.00166 * 14 12 10 17 17 H 1.48498 * 109.47155 * 329.99990 * 14 12 10 18 18 N 1.32987 * 118.93431 * 359.52694 * 4 3 2 19 19 C 1.31744 * 120.69292 * 0.25145 * 18 4 3 20 20 N 1.31794 * 121.82756 * 359.97438 * 19 18 4 21 21 H 1.09007 * 109.47318 * 270.28018 * 1 2 3 22 22 H 1.08995 * 109.47418 * 30.28103 * 1 2 3 23 23 H 1.08997 * 109.47270 * 150.28195 * 1 2 3 24 24 H 1.07998 * 120.83068 * 359.97438 * 3 2 1 25 25 H 1.09000 * 109.47553 * 270.27333 * 6 5 4 26 26 H 1.09001 * 109.47178 * 30.27789 * 6 5 4 27 27 H 1.09007 * 109.47024 * 150.27704 * 6 5 4 28 28 H 1.09001 * 109.47063 * 179.97438 * 9 7 5 29 29 H 1.09003 * 109.47675 * 299.99268 * 9 7 5 30 30 H 1.09007 * 109.47547 * 60.00003 * 9 7 5 31 31 H 0.97006 * 119.99327 * 179.97438 * 13 12 10 32 32 H 1.07992 * 119.09272 * 179.97438 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1409 -0.0042 5 7 4.3476 2.3081 -0.0085 6 6 5.7924 2.2527 -0.2442 7 6 3.6929 3.5971 0.2287 8 1 2.6452 3.4317 0.4795 9 6 4.3873 4.3163 1.3868 10 6 3.7842 4.4432 -1.0151 11 1 4.2799 4.0590 -1.8944 12 6 3.2349 5.7076 -1.0304 13 7 2.6317 6.1756 0.0405 14 14 3.3474 6.7562 -2.5723 15 1 2.1635 6.5013 -3.4317 16 1 3.3842 8.1915 -2.1933 17 1 4.5840 6.4093 -3.3177 18 7 4.2023 -0.0454 0.0016 19 6 3.4956 -1.1572 0.0062 20 7 2.1777 -1.1432 0.0057 21 1 -0.3634 0.0050 1.0277 22 1 -0.3634 0.8874 -0.5182 23 1 -0.3633 -0.8925 -0.5094 24 1 1.6862 2.1380 -0.0004 25 1 6.3115 2.1349 0.7070 26 1 6.0229 1.4063 -0.8911 27 1 6.1180 3.1759 -0.7238 28 1 3.9006 5.2755 1.5630 29 1 4.3213 3.7044 2.2865 30 1 5.4352 4.4817 1.1359 31 1 2.2456 7.0654 0.0297 32 1 4.0104 -2.1066 0.0104 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:52 Heat of formation + Delta-G solvation = 34.276341 kcal Electronic energy + Delta-G solvation = -15045.912185 eV Core-core repulsion = 12620.056498 eV Total energy + Delta-G solvation = -2425.855686 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.74794 -38.52682 -35.43996 -34.49335 -32.64344 -30.94799 -29.52350 -27.35502 -26.87433 -25.13353 -23.14344 -21.38674 -18.67607 -18.27086 -18.06710 -16.69203 -16.20579 -16.03387 -15.61410 -15.21330 -14.92663 -14.35037 -13.84538 -13.68119 -13.54839 -13.14265 -13.02145 -12.89221 -12.78332 -12.55279 -12.28903 -12.15231 -11.80131 -11.41570 -11.09491 -10.55185 -10.52136 -10.05279 -8.66919 -8.15171 -6.33808 0.24885 0.52264 1.40224 1.42675 1.51364 2.13411 2.42495 3.04224 3.10183 3.39061 3.54071 3.89733 4.32574 4.48005 4.53670 4.59536 4.68321 4.78675 4.80439 4.89412 4.96114 4.97421 5.03300 5.13102 5.35027 5.57456 5.63461 5.73286 5.99212 6.12478 6.52474 6.64252 6.79530 7.35390 7.46888 8.84865 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030953 B = 0.008647 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.372948 B = 3237.410464 C = 3619.183824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.190 3.810 3 C -0.310 4.310 4 C 0.423 3.577 5 N -0.584 5.584 6 C 0.110 3.890 7 C 0.272 3.728 8 H 0.033 0.967 9 C -0.136 4.136 10 C -0.541 4.541 11 H 0.051 0.949 12 C 0.027 3.973 13 N -0.910 5.910 14 Si 0.957 3.043 15 H -0.278 1.278 16 H -0.279 1.279 17 H -0.272 1.272 18 N -0.605 5.605 19 C 0.328 3.672 20 N -0.587 5.587 21 H 0.095 0.905 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.131 0.869 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.022 0.978 30 H 0.039 0.961 31 H 0.267 0.733 32 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 -8.228 0.149 8.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.050 3.950 3 C -0.338 4.338 4 C 0.180 3.820 5 N -0.293 5.293 6 C -0.033 4.033 7 C 0.170 3.830 8 H 0.050 0.950 9 C -0.195 4.195 10 C -0.579 4.579 11 H 0.069 0.931 12 C -0.174 4.174 13 N -0.548 5.548 14 Si 0.782 3.218 15 H -0.204 1.204 16 H -0.205 1.205 17 H -0.197 1.197 18 N -0.332 5.332 19 C 0.039 3.961 20 N -0.309 5.309 21 H 0.113 0.887 22 H 0.101 0.899 23 H 0.109 0.891 24 H 0.149 0.851 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.024 -8.654 0.222 8.657 hybrid contribution -0.220 1.670 -0.648 1.805 sum -0.196 -6.984 -0.426 7.000 Atomic orbital electron populations 1.20783 0.85992 1.04371 1.04339 1.21821 0.98651 0.87120 0.87446 1.22186 0.94070 1.01167 1.16420 1.18935 0.89006 0.87075 0.86984 1.47107 1.07916 1.03663 1.70599 1.21410 0.79472 1.01966 1.00428 1.18795 0.92155 0.77827 0.94215 0.94979 1.21941 0.99834 1.01683 0.96044 1.21521 1.37664 1.00253 0.98484 0.93101 1.25549 0.94408 0.98433 0.99020 1.69957 1.37211 1.18500 1.29160 0.85575 0.78473 0.77983 0.79720 1.20368 1.20456 1.19680 1.68023 1.41961 0.97904 1.25287 1.25243 0.86936 0.96362 0.87594 1.68298 1.10325 1.29658 1.22615 0.88659 0.89907 0.89054 0.85108 0.93221 0.91466 0.91540 0.90512 0.95901 0.94200 0.92358 0.75950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.45 10.21 71.23 0.73 -1.72 16 2 C 0.19 6.53 6.82 42.42 0.29 6.82 16 3 C -0.31 -12.49 8.98 22.58 0.20 -12.28 16 4 C 0.42 17.85 7.34 133.16 0.98 18.83 16 5 N -0.58 -25.54 2.86 -708.31 -2.02 -27.56 16 6 C 0.11 4.17 9.24 127.77 1.18 5.35 16 7 C 0.27 13.17 2.50 44.24 0.11 13.28 16 8 H 0.03 1.69 5.57 -2.39 -0.01 1.68 16 9 C -0.14 -6.31 8.88 71.98 0.64 -5.67 16 10 C -0.54 -28.18 8.08 25.60 0.21 -27.97 16 11 H 0.05 2.70 7.73 -2.91 -0.02 2.68 16 12 C 0.03 1.38 5.30 84.65 0.45 1.82 16 13 N -0.91 -48.65 11.32 21.45 0.24 -48.41 16 14 Si 0.96 41.56 29.54 68.60 2.03 43.58 16 15 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 N -0.60 -22.93 9.42 -197.63 -1.86 -24.79 16 19 C 0.33 10.58 12.28 180.90 2.22 12.80 16 20 N -0.59 -19.72 10.37 -188.35 -1.95 -21.67 16 21 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 22 H 0.08 1.98 8.09 -2.39 -0.02 1.96 16 23 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.13 5.61 6.09 -2.91 -0.02 5.59 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 2.40 7.60 -2.39 -0.02 2.38 16 27 H 0.07 2.56 7.42 -2.38 -0.02 2.55 16 28 H 0.08 3.87 6.07 -2.39 -0.01 3.86 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.04 1.74 7.53 -2.38 -0.02 1.73 16 31 H 0.27 13.58 8.31 -92.70 -0.77 12.81 16 32 H 0.22 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -58.44 269.49 4.54 -53.90 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 1.11 Total: 13.70 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 7.00 Total: 11.25 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -5.59 Total: -122.43 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -58.44 4.54 -53.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.173 kcal (2) G-P(sol) polarization free energy of solvation -58.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds