Wall clock time and date at job start Sun Mar 29 2020 22:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38124 * 120.40081 * 2 1 4 4 C 1.39618 * 118.33414 * 180.19349 * 3 2 1 5 5 N 1.38539 * 120.53379 * 179.80304 * 4 3 2 6 6 C 1.46499 * 120.00459 * 190.82852 * 5 4 3 7 7 C 1.46507 * 119.99879 * 10.83208 * 5 4 3 8 8 H 1.08998 * 109.47218 * 5.76734 * 7 5 4 9 9 C 1.53000 * 109.47005 * 245.77007 * 7 5 4 10 10 C 1.50693 * 109.47343 * 125.77046 * 7 5 4 11 11 H 1.08006 * 120.00259 * 5.60938 * 10 7 5 12 12 C 1.37882 * 120.00416 * 185.61711 * 10 7 5 13 13 N 1.31512 * 120.00191 * 197.88994 * 12 10 7 14 14 Si 1.86799 * 119.99390 * 17.88980 * 12 10 7 15 15 H 1.48505 * 109.46675 * 180.02562 * 14 12 10 16 16 H 1.48499 * 109.47113 * 299.99908 * 14 12 10 17 17 H 1.48495 * 109.47415 * 60.00429 * 14 12 10 18 18 N 1.32996 * 118.93832 * 359.53090 * 4 3 2 19 19 C 1.31750 * 120.68383 * 0.24831 * 18 4 3 20 20 N 1.31788 * 121.83613 * 359.97438 * 19 18 4 21 21 H 1.08993 * 109.47180 * 270.28076 * 1 2 3 22 22 H 1.08999 * 109.46947 * 30.28398 * 1 2 3 23 23 H 1.08997 * 109.46978 * 150.27947 * 1 2 3 24 24 H 1.08000 * 120.82959 * 359.97438 * 3 2 1 25 25 H 1.08994 * 109.47273 * 270.00191 * 6 5 4 26 26 H 1.09007 * 109.46892 * 30.00590 * 6 5 4 27 27 H 1.09003 * 109.47269 * 149.99810 * 6 5 4 28 28 H 1.09002 * 109.47043 * 294.83610 * 9 7 5 29 29 H 1.08999 * 109.47375 * 54.83441 * 9 7 5 30 30 H 1.09002 * 109.47053 * 174.83627 * 9 7 5 31 31 H 0.97001 * 120.00048 * 354.95115 * 13 12 10 32 32 H 1.08000 * 119.08106 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1913 0.0000 4 6 3.6012 1.1410 -0.0042 5 7 4.3476 2.3081 -0.0084 6 6 5.7914 2.2535 -0.2511 7 6 3.6931 3.5970 0.2298 8 1 2.6477 3.4311 0.4899 9 6 3.7741 4.4518 -1.0366 10 6 4.3855 4.3103 1.3624 11 1 5.2826 3.8929 1.7954 12 6 3.8737 5.4957 1.8460 13 7 4.6310 6.2932 2.5673 14 14 2.1048 5.9689 1.4768 15 1 1.8016 7.2798 2.1053 16 1 1.9158 6.0695 0.0073 17 1 1.1910 4.9341 2.0237 18 7 4.2024 -0.0453 0.0016 19 6 3.4956 -1.1572 0.0062 20 7 2.1778 -1.1432 0.0057 21 1 -0.3633 0.0050 1.0276 22 1 -0.3633 0.8874 -0.5182 23 1 -0.3633 -0.8925 -0.5095 24 1 1.6862 2.1380 -0.0004 25 1 6.3151 2.1377 0.6977 26 1 6.0193 1.4062 -0.8978 27 1 6.1138 3.1761 -0.7339 28 1 4.8161 4.6945 -1.2451 29 1 3.3551 3.8977 -1.8765 30 1 3.2089 5.3723 -0.8903 31 1 5.5250 6.0149 2.8208 32 1 4.0105 -2.1065 0.0112 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096117.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:56 Heat of formation + Delta-G solvation = 51.060233 kcal Electronic energy + Delta-G solvation = -15104.798858 eV Core-core repulsion = 12679.670976 eV Total energy + Delta-G solvation = -2425.127882 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.42825 -37.06899 -33.91685 -32.87327 -31.28463 -29.87361 -28.33226 -25.58117 -24.88386 -23.73530 -21.65053 -19.64202 -17.72779 -16.93409 -16.68277 -14.91093 -14.83546 -14.58990 -14.10021 -13.79019 -13.41628 -12.77298 -12.68333 -12.62012 -12.16505 -12.02274 -11.85087 -11.51856 -11.33831 -10.64778 -10.38544 -10.27043 -9.91786 -9.88051 -9.30807 -9.07771 -8.71035 -8.41094 -7.24478 -6.59443 -4.28016 1.53436 1.89964 3.21395 3.29556 3.43272 3.60089 4.31122 4.36775 4.53334 4.77675 5.06045 5.20943 5.52158 5.64072 5.70484 5.85857 5.88535 6.04691 6.10903 6.17591 6.23565 6.32228 6.37727 6.47844 6.67092 6.87865 7.03794 7.32672 7.63399 7.96468 8.11786 8.22266 8.69781 8.82342 9.41441 10.74801 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030380 B = 0.009737 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.447369 B = 2874.964530 C = 3432.088471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.190 3.810 3 C -0.295 4.295 4 C 0.443 3.557 5 N -0.565 5.565 6 C 0.112 3.888 7 C 0.244 3.756 8 H 0.042 0.958 9 C -0.166 4.166 10 C -0.616 4.616 11 H 0.064 0.936 12 C 0.037 3.963 13 N -0.895 5.895 14 Si 1.037 2.963 15 H -0.280 1.280 16 H -0.270 1.270 17 H -0.280 1.280 18 N -0.592 5.592 19 C 0.332 3.668 20 N -0.583 5.583 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.139 0.861 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.270 0.730 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.280 -8.452 -6.499 11.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.049 3.951 3 C -0.323 4.323 4 C 0.198 3.802 5 N -0.272 5.272 6 C -0.032 4.032 7 C 0.142 3.858 8 H 0.060 0.940 9 C -0.225 4.225 10 C -0.654 4.654 11 H 0.082 0.918 12 C -0.170 4.170 13 N -0.528 5.528 14 Si 0.865 3.135 15 H -0.206 1.206 16 H -0.197 1.197 17 H -0.206 1.206 18 N -0.319 5.319 19 C 0.042 3.958 20 N -0.305 5.305 21 H 0.098 0.902 22 H 0.093 0.907 23 H 0.095 0.905 24 H 0.157 0.843 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.801 -7.801 -6.281 11.574 hybrid contribution 0.984 -0.401 -0.019 1.063 sum -4.817 -8.202 -6.300 11.409 Atomic orbital electron populations 1.20687 0.88821 1.03218 1.03133 1.21223 0.96749 0.87922 0.89170 1.22044 0.94052 1.00560 1.15685 1.18690 0.88379 0.86787 0.86315 1.46916 1.07321 1.03546 1.69447 1.21348 0.80364 1.01165 1.00297 1.19320 0.93903 0.78272 0.94274 0.94038 1.22586 1.01792 1.00501 0.97583 1.22159 1.13996 1.10009 1.19205 0.91816 1.25702 1.04559 0.92064 0.94644 1.70853 1.10591 1.34336 1.37043 0.84165 0.75333 0.77037 0.76951 1.20590 1.19678 1.20570 1.67996 1.41517 0.97880 1.24462 1.24434 0.86755 0.95640 0.88984 1.68168 1.10000 1.29843 1.22532 0.90215 0.90657 0.90519 0.84298 0.93628 0.92210 0.91493 0.92865 0.95261 0.91477 0.91972 0.79785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.21 36.00 0.37 -0.88 16 2 C 0.19 3.18 6.82 -82.32 -0.56 2.62 16 3 C -0.29 -5.53 8.98 -39.11 -0.35 -5.89 16 4 C 0.44 9.08 7.33 -154.78 -1.14 7.94 16 5 N -0.57 -12.08 2.86 -175.23 -0.50 -12.58 16 6 C 0.11 2.16 9.36 59.85 0.56 2.72 16 7 C 0.24 5.56 2.08 -69.08 -0.14 5.41 16 8 H 0.04 0.95 4.23 -51.93 -0.22 0.73 16 9 C -0.17 -3.43 8.86 37.16 0.33 -3.10 16 10 C -0.62 -16.42 8.62 -34.44 -0.30 -16.72 16 11 H 0.06 1.87 7.45 -52.48 -0.39 1.48 16 12 C 0.04 1.01 5.34 -17.82 -0.10 0.92 16 13 N -0.90 -26.28 13.70 55.43 0.76 -25.52 16 14 Si 1.04 23.40 26.44 -169.99 -4.49 18.90 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.27 -5.49 5.50 56.52 0.31 -5.18 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 N -0.59 -11.40 9.42 -13.81 -0.13 -11.53 16 19 C 0.33 5.57 12.28 -92.20 -1.13 4.43 16 20 N -0.58 -10.00 10.37 -10.88 -0.11 -10.11 16 21 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 22 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 23 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.14 2.52 6.10 -52.49 -0.32 2.20 16 25 H 0.05 0.92 7.97 -51.93 -0.41 0.50 16 26 H 0.06 1.05 7.60 -51.93 -0.39 0.66 16 27 H 0.07 1.25 6.85 -51.93 -0.36 0.90 16 28 H 0.05 1.09 7.09 -51.93 -0.37 0.73 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.39 4.82 -51.93 -0.25 1.14 16 31 H 0.27 7.94 8.73 -40.82 -0.36 7.58 16 32 H 0.19 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 263.77 15.07 3.97 3.97 Total: -1.00 -29.93 263.77 -7.03 -36.96 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.07 Total: 2.44 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.46 Total: -2.54 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.02 Total: -59.74 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -4.49 Total: 18.90 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.93 -7.03 -36.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096117.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.023 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds