Wall clock time and date at job start Sun Mar 29 2020 22:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38124 * 120.40081 * 2 1 4 4 C 1.39618 * 118.33414 * 180.19349 * 3 2 1 5 5 N 1.38539 * 120.53379 * 179.80304 * 4 3 2 6 6 C 1.46499 * 120.00459 * 190.82852 * 5 4 3 7 7 C 1.46507 * 119.99879 * 10.83208 * 5 4 3 8 8 H 1.08998 * 109.47218 * 5.76734 * 7 5 4 9 9 C 1.53000 * 109.47005 * 245.77007 * 7 5 4 10 10 C 1.50693 * 109.47343 * 125.77046 * 7 5 4 11 11 H 1.08006 * 120.00259 * 5.60938 * 10 7 5 12 12 C 1.37882 * 120.00416 * 185.61711 * 10 7 5 13 13 N 1.31512 * 120.00191 * 197.88994 * 12 10 7 14 14 Si 1.86799 * 119.99390 * 17.88980 * 12 10 7 15 15 H 1.48505 * 109.46675 * 180.02562 * 14 12 10 16 16 H 1.48499 * 109.47113 * 299.99908 * 14 12 10 17 17 H 1.48495 * 109.47415 * 60.00429 * 14 12 10 18 18 N 1.32996 * 118.93832 * 359.53090 * 4 3 2 19 19 C 1.31750 * 120.68383 * 0.24831 * 18 4 3 20 20 N 1.31788 * 121.83613 * 359.97438 * 19 18 4 21 21 H 1.08993 * 109.47180 * 270.28076 * 1 2 3 22 22 H 1.08999 * 109.46947 * 30.28398 * 1 2 3 23 23 H 1.08997 * 109.46978 * 150.27947 * 1 2 3 24 24 H 1.08000 * 120.82959 * 359.97438 * 3 2 1 25 25 H 1.08994 * 109.47273 * 270.00191 * 6 5 4 26 26 H 1.09007 * 109.46892 * 30.00590 * 6 5 4 27 27 H 1.09003 * 109.47269 * 149.99810 * 6 5 4 28 28 H 1.09002 * 109.47043 * 294.83610 * 9 7 5 29 29 H 1.08999 * 109.47375 * 54.83441 * 9 7 5 30 30 H 1.09002 * 109.47053 * 174.83627 * 9 7 5 31 31 H 0.97001 * 120.00048 * 354.95115 * 13 12 10 32 32 H 1.08000 * 119.08106 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1913 0.0000 4 6 3.6012 1.1410 -0.0042 5 7 4.3476 2.3081 -0.0084 6 6 5.7914 2.2535 -0.2511 7 6 3.6931 3.5970 0.2298 8 1 2.6477 3.4311 0.4899 9 6 3.7741 4.4518 -1.0366 10 6 4.3855 4.3103 1.3624 11 1 5.2826 3.8929 1.7954 12 6 3.8737 5.4957 1.8460 13 7 4.6310 6.2932 2.5673 14 14 2.1048 5.9689 1.4768 15 1 1.8016 7.2798 2.1053 16 1 1.9158 6.0695 0.0073 17 1 1.1910 4.9341 2.0237 18 7 4.2024 -0.0453 0.0016 19 6 3.4956 -1.1572 0.0062 20 7 2.1778 -1.1432 0.0057 21 1 -0.3633 0.0050 1.0276 22 1 -0.3633 0.8874 -0.5182 23 1 -0.3633 -0.8925 -0.5095 24 1 1.6862 2.1380 -0.0004 25 1 6.3151 2.1377 0.6977 26 1 6.0193 1.4062 -0.8978 27 1 6.1138 3.1761 -0.7339 28 1 4.8161 4.6945 -1.2451 29 1 3.3551 3.8977 -1.8765 30 1 3.2089 5.3723 -0.8903 31 1 5.5250 6.0149 2.8208 32 1 4.0105 -2.1065 0.0112 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096117.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:55 Heat of formation + Delta-G solvation = 33.051142 kcal Electronic energy + Delta-G solvation = -15105.579791 eV Core-core repulsion = 12679.670976 eV Total energy + Delta-G solvation = -2425.908815 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.82271 -38.67565 -35.46883 -34.59187 -32.84387 -31.53159 -29.55737 -27.09963 -26.76553 -25.16955 -23.15605 -21.29770 -19.66124 -18.46343 -18.17143 -16.33041 -16.26584 -16.17882 -15.61592 -15.30925 -15.05240 -14.44563 -14.16004 -13.86894 -13.63113 -13.50351 -13.28360 -13.05229 -12.90013 -12.39558 -12.02086 -11.73514 -11.64324 -11.44088 -11.06715 -10.60129 -10.45923 -10.10338 -9.02542 -8.57053 -6.45592 0.19657 0.46560 1.44155 1.53074 1.69080 2.05106 2.45367 2.99692 3.00103 3.35770 3.47152 3.81182 4.19964 4.33434 4.43008 4.47034 4.53730 4.68466 4.70490 4.76390 4.80655 4.84975 4.93657 5.02542 5.13692 5.39073 5.56851 5.71983 5.80917 5.96633 6.37543 6.50040 6.65444 7.32504 7.41647 8.56550 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030380 B = 0.009737 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.447369 B = 2874.964530 C = 3432.088471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.193 3.807 3 C -0.312 4.312 4 C 0.421 3.579 5 N -0.582 5.582 6 C 0.119 3.881 7 C 0.248 3.752 8 H 0.051 0.949 9 C -0.158 4.158 10 C -0.615 4.615 11 H 0.020 0.980 12 C -0.012 4.012 13 N -0.930 5.930 14 Si 1.073 2.927 15 H -0.288 1.288 16 H -0.229 1.229 17 H -0.261 1.261 18 N -0.609 5.609 19 C 0.330 3.670 20 N -0.586 5.586 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.145 0.855 25 H 0.024 0.976 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.252 0.748 32 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -9.700 -8.000 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.052 3.948 3 C -0.340 4.340 4 C 0.178 3.822 5 N -0.291 5.291 6 C -0.024 4.024 7 C 0.145 3.855 8 H 0.068 0.932 9 C -0.216 4.216 10 C -0.653 4.653 11 H 0.038 0.962 12 C -0.212 4.212 13 N -0.565 5.565 14 Si 0.893 3.107 15 H -0.214 1.214 16 H -0.153 1.153 17 H -0.185 1.185 18 N -0.336 5.336 19 C 0.040 3.960 20 N -0.307 5.307 21 H 0.111 0.889 22 H 0.112 0.888 23 H 0.109 0.891 24 H 0.162 0.838 25 H 0.043 0.957 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.298 -9.107 -7.803 14.583 hybrid contribution 1.812 -0.194 0.488 1.886 sum -6.487 -9.301 -7.315 13.494 Atomic orbital electron populations 1.20831 0.85515 1.04895 1.04400 1.21926 0.98861 0.87043 0.86983 1.22220 0.93414 1.01695 1.16720 1.18981 0.89252 0.86842 0.87081 1.46830 1.07739 1.03594 1.70935 1.21274 0.79851 1.01823 0.99454 1.19141 0.93683 0.79044 0.93648 0.93182 1.22443 1.01635 1.00313 0.97249 1.22316 1.12531 1.10237 1.20243 0.96184 1.27194 1.07944 0.92253 0.93787 1.70996 1.10249 1.35641 1.39579 0.83785 0.70594 0.76844 0.79513 1.21411 1.15291 1.18540 1.68022 1.42304 0.98184 1.25069 1.25213 0.87023 0.96222 0.87504 1.68319 1.10130 1.29985 1.22288 0.88913 0.88789 0.89103 0.83766 0.95740 0.90530 0.91522 0.93643 0.92672 0.91324 0.93887 0.76219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 10.21 71.24 0.73 -1.32 16 2 C 0.19 5.88 6.82 42.42 0.29 6.17 16 3 C -0.31 -11.01 8.98 22.58 0.20 -10.81 16 4 C 0.42 16.75 7.33 133.16 0.98 17.73 16 5 N -0.58 -24.65 2.86 -708.32 -2.02 -26.68 16 6 C 0.12 4.68 9.36 127.77 1.20 5.88 16 7 C 0.25 11.03 2.08 44.24 0.09 11.12 16 8 H 0.05 2.17 4.23 -2.39 -0.01 2.16 16 9 C -0.16 -6.20 8.86 71.98 0.64 -5.56 16 10 C -0.62 -33.52 8.62 25.60 0.22 -33.30 16 11 H 0.02 1.23 7.45 -2.91 -0.02 1.21 16 12 C -0.01 -0.69 5.34 84.66 0.45 -0.23 16 13 N -0.93 -56.35 13.70 21.45 0.29 -56.05 16 14 Si 1.07 45.62 26.44 68.60 1.81 47.43 16 15 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 16 H -0.23 -8.21 5.50 99.48 0.55 -7.66 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 18 N -0.61 -22.63 9.42 -197.62 -1.86 -24.49 16 19 C 0.33 10.25 12.28 180.90 2.22 12.47 16 20 N -0.59 -18.36 10.37 -188.33 -1.95 -20.32 16 21 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 23 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.14 4.83 6.10 -2.91 -0.02 4.81 16 25 H 0.02 1.02 7.97 -2.39 -0.02 1.00 16 26 H 0.08 2.68 7.60 -2.38 -0.02 2.67 16 27 H 0.07 2.55 6.85 -2.39 -0.02 2.53 16 28 H 0.04 1.82 7.09 -2.39 -0.02 1.80 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 2.64 4.82 -2.39 -0.01 2.63 16 31 H 0.25 15.66 8.73 -92.71 -0.81 14.85 16 32 H 0.22 4.92 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -65.89 263.77 4.20 -61.69 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.92 Total: 16.27 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 7.02 Total: 2.15 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -5.55 Total: -127.54 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.81 Total: 47.43 kcal Total: -65.89 4.20 -61.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096117.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.742 kcal (2) G-P(sol) polarization free energy of solvation -65.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds