Wall clock time and date at job start Sun Mar 29 2020 21:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38288 * 119.94356 * 2 1 4 4 C 1.38123 * 120.05660 * 180.02562 * 3 2 1 5 5 C 1.38754 * 119.94543 * 359.97438 * 4 3 2 6 6 O 1.35891 * 120.05750 * 179.97438 * 5 4 3 7 7 C 1.38712 * 119.88573 * 359.97438 * 5 4 3 8 8 C 1.50699 * 120.02579 * 179.97438 * 7 5 4 9 9 N 1.46906 * 109.46990 * 285.00288 * 8 7 5 10 10 C 1.46902 * 110.99573 * 180.02562 * 9 8 7 11 11 C 1.50707 * 109.46656 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00358 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99768 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00203 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00034 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47118 * 89.99770 * 15 13 11 17 17 H 1.48500 * 109.47037 * 209.99864 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00240 * 15 13 11 19 19 C 1.38166 * 119.94750 * 0.25942 * 7 5 4 20 20 H 1.09004 * 109.47051 * 90.00919 * 1 2 3 21 21 H 1.08999 * 109.47323 * 210.00354 * 1 2 3 22 22 H 1.09002 * 109.47691 * 330.00811 * 1 2 3 23 23 H 1.08001 * 119.97157 * 359.97193 * 3 2 1 24 24 H 1.08001 * 120.02792 * 179.97438 * 4 3 2 25 25 H 0.96700 * 114.00416 * 270.02403 * 6 5 4 26 26 H 1.09002 * 109.47064 * 165.00565 * 8 7 5 27 27 H 1.09000 * 109.47099 * 45.00291 * 8 7 5 28 28 H 1.00896 * 111.00309 * 56.04484 * 9 8 7 29 29 H 1.08990 * 109.47358 * 299.99539 * 10 9 8 30 30 H 1.09004 * 109.47457 * 60.00221 * 10 9 8 31 31 H 0.96997 * 120.00560 * 179.97438 * 14 13 11 32 32 H 1.07997 * 119.97451 * 179.74819 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2010 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6323 0.0001 -0.0016 7 6 3.5787 -1.2005 0.0005 8 6 4.3303 -2.5067 0.0000 9 7 4.8837 -2.7526 -1.3385 10 6 5.6244 -4.0206 -1.3770 11 6 6.1755 -4.2385 -2.7627 12 1 5.9941 -3.5079 -3.5370 13 6 6.9122 -5.3701 -3.0415 14 7 7.1345 -6.2591 -2.0981 15 14 7.5960 -5.6398 -4.7588 16 1 8.9497 -5.0367 -4.8529 17 1 7.6828 -7.0965 -5.0338 18 1 6.6990 -5.0005 -5.7548 19 6 2.1970 -1.1979 -0.0038 20 1 -0.3633 -0.0002 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5137 23 1 1.6558 2.1328 -0.0005 24 1 4.1170 2.1371 -0.0010 25 1 6.0250 0.0001 -0.8853 26 1 3.6514 -3.3167 0.2668 27 1 5.1422 -2.4590 0.7257 28 1 5.4661 -1.9841 -1.6358 29 1 6.4452 -3.9839 -0.6608 30 1 4.9542 -4.8409 -1.1198 31 1 7.6524 -7.0553 -2.2943 32 1 1.6557 -2.1324 -0.0071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070955074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:30 Heat of formation + Delta-G solvation = -32.054916 kcal Electronic energy + Delta-G solvation = -14359.030261 eV Core-core repulsion = 11898.005484 eV Total energy + Delta-G solvation = -2461.024777 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.81655 -36.76038 -35.34035 -32.75121 -31.61332 -30.90385 -27.15699 -26.13776 -24.29112 -22.12896 -21.48343 -20.40568 -18.03547 -16.51110 -15.94695 -15.55991 -14.87335 -14.58145 -14.22279 -13.83949 -13.43230 -13.30878 -13.10577 -12.59544 -12.23974 -11.67140 -11.55934 -11.45615 -11.33096 -11.14262 -10.74098 -10.65309 -10.20713 -9.91501 -9.21263 -8.70581 -8.48991 -8.23108 -7.31729 -6.04077 -4.06496 1.35806 1.49264 3.31241 3.37339 3.41841 3.70590 4.42335 4.45365 4.88915 4.91578 5.02817 5.31787 5.34439 5.42130 5.55110 5.59262 5.69751 5.77269 5.97538 6.05645 6.15757 6.32311 6.44621 6.64313 6.78819 6.97283 7.22473 7.40024 7.75763 7.84427 8.10306 8.34940 8.56599 9.02286 9.58437 11.07017 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041984 B = 0.005596 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.754274 B = 5002.133560 C = 5197.339420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.115 4.115 4 C -0.144 4.144 5 C 0.103 3.897 6 O -0.498 6.498 7 C -0.085 4.085 8 C 0.096 3.904 9 N -0.680 5.680 10 C 0.193 3.807 11 C -0.515 4.515 12 H 0.062 0.938 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.900 3.100 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.092 4.092 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.121 0.879 24 H 0.124 0.876 25 H 0.390 0.610 26 H 0.072 0.928 27 H 0.036 0.964 28 H 0.323 0.677 29 H -0.012 1.012 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.582 13.277 4.194 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.134 4.134 4 C -0.162 4.162 5 C 0.058 3.942 6 O -0.309 6.309 7 C -0.086 4.086 8 C -0.033 4.033 9 N -0.311 5.311 10 C 0.066 3.934 11 C -0.553 4.553 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.727 3.273 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.110 4.110 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.139 0.861 24 H 0.142 0.858 25 H 0.247 0.753 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.139 0.861 29 H 0.006 0.994 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.132 12.792 4.597 16.953 hybrid contribution 1.388 -0.026 -0.902 1.655 sum -8.744 12.766 3.695 15.908 Atomic orbital electron populations 1.20749 0.91282 1.02469 1.02244 1.19893 0.96035 0.93092 1.00925 1.20796 0.93467 0.97435 1.01682 1.21320 0.94523 0.97513 1.02865 1.18346 0.82987 0.91803 1.01090 1.84772 1.16013 1.96393 1.33691 1.20376 0.94087 0.95158 0.98958 1.20792 0.97406 0.92389 0.92749 1.60814 1.42008 1.06656 1.21615 1.19594 0.91312 0.85683 0.96774 1.21162 1.32132 1.06035 0.96014 0.91999 1.24989 0.96256 0.95892 0.97392 1.69961 1.40191 1.10786 1.32739 0.86475 0.79223 0.77265 0.84305 1.20698 1.21211 1.19778 1.20862 0.92945 0.97689 0.99523 0.91264 0.91583 0.91852 0.86145 0.85815 0.75333 0.90924 0.94574 0.86059 0.99371 0.95297 0.92868 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 2 C -0.10 -1.25 5.88 -104.60 -0.62 -1.86 16 3 C -0.12 -1.39 9.69 -39.60 -0.38 -1.78 16 4 C -0.14 -1.89 9.99 -39.43 -0.39 -2.29 16 5 C 0.10 1.58 6.56 -39.22 -0.26 1.32 16 6 O -0.50 -7.56 12.46 -19.40 -0.24 -7.80 16 7 C -0.08 -1.40 5.44 -104.47 -0.57 -1.96 16 8 C 0.10 1.82 5.44 -4.97 -0.03 1.79 16 9 N -0.68 -14.86 6.48 -116.33 -0.75 -15.61 16 10 C 0.19 5.12 5.44 -4.97 -0.03 5.09 16 11 C -0.51 -14.66 9.32 -34.44 -0.32 -14.98 16 12 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 15 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.09 -1.34 9.32 -39.60 -0.37 -1.71 16 20 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 22 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 23 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 24 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 25 H 0.39 4.64 8.41 45.56 0.38 5.02 16 26 H 0.07 1.36 7.95 -51.93 -0.41 0.94 16 27 H 0.04 0.72 8.01 -51.93 -0.42 0.30 16 28 H 0.32 6.61 7.54 -39.29 -0.30 6.31 16 29 H -0.01 -0.32 8.14 -51.93 -0.42 -0.75 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.13 1.71 8.00 -52.49 -0.42 1.29 16 LS Contribution 278.37 15.07 4.19 4.19 Total: -1.00 -31.63 278.37 -7.44 -39.08 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -3.66 Total: 5.23 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -2.70 Total: -15.54 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -0.02 Total: -41.85 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.24 Total: -7.80 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.63 -7.44 -39.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070955074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.022 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds