Wall clock time and date at job start Sun Mar 29 2020 21:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38288 * 119.94356 * 2 1 4 4 C 1.38123 * 120.05660 * 180.02562 * 3 2 1 5 5 C 1.38754 * 119.94543 * 359.97438 * 4 3 2 6 6 O 1.35891 * 120.05750 * 179.97438 * 5 4 3 7 7 C 1.38712 * 119.88573 * 359.97438 * 5 4 3 8 8 C 1.50699 * 120.02579 * 179.97438 * 7 5 4 9 9 N 1.46906 * 109.46990 * 285.00288 * 8 7 5 10 10 C 1.46902 * 110.99573 * 180.02562 * 9 8 7 11 11 C 1.50707 * 109.46656 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00358 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99768 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00203 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00034 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47118 * 89.99770 * 15 13 11 17 17 H 1.48500 * 109.47037 * 209.99864 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00240 * 15 13 11 19 19 C 1.38166 * 119.94750 * 0.25942 * 7 5 4 20 20 H 1.09004 * 109.47051 * 90.00919 * 1 2 3 21 21 H 1.08999 * 109.47323 * 210.00354 * 1 2 3 22 22 H 1.09002 * 109.47691 * 330.00811 * 1 2 3 23 23 H 1.08001 * 119.97157 * 359.97193 * 3 2 1 24 24 H 1.08001 * 120.02792 * 179.97438 * 4 3 2 25 25 H 0.96700 * 114.00416 * 270.02403 * 6 5 4 26 26 H 1.09002 * 109.47064 * 165.00565 * 8 7 5 27 27 H 1.09000 * 109.47099 * 45.00291 * 8 7 5 28 28 H 1.00896 * 111.00309 * 56.04484 * 9 8 7 29 29 H 1.08990 * 109.47358 * 299.99539 * 10 9 8 30 30 H 1.09004 * 109.47457 * 60.00221 * 10 9 8 31 31 H 0.96997 * 120.00560 * 179.97438 * 14 13 11 32 32 H 1.07997 * 119.97451 * 179.74819 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2010 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6323 0.0001 -0.0016 7 6 3.5787 -1.2005 0.0005 8 6 4.3303 -2.5067 0.0000 9 7 4.8837 -2.7526 -1.3385 10 6 5.6244 -4.0206 -1.3770 11 6 6.1755 -4.2385 -2.7627 12 1 5.9941 -3.5079 -3.5370 13 6 6.9122 -5.3701 -3.0415 14 7 7.1345 -6.2591 -2.0981 15 14 7.5960 -5.6398 -4.7588 16 1 8.9497 -5.0367 -4.8529 17 1 7.6828 -7.0965 -5.0338 18 1 6.6990 -5.0005 -5.7548 19 6 2.1970 -1.1979 -0.0038 20 1 -0.3633 -0.0002 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5137 23 1 1.6558 2.1328 -0.0005 24 1 4.1170 2.1371 -0.0010 25 1 6.0250 0.0001 -0.8853 26 1 3.6514 -3.3167 0.2668 27 1 5.1422 -2.4590 0.7257 28 1 5.4661 -1.9841 -1.6358 29 1 6.4452 -3.9839 -0.6608 30 1 4.9542 -4.8409 -1.1198 31 1 7.6524 -7.0553 -2.2943 32 1 1.6557 -2.1324 -0.0071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070955074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:30 Heat of formation + Delta-G solvation = -54.774519 kcal Electronic energy + Delta-G solvation = -14360.015457 eV Core-core repulsion = 11898.005484 eV Total energy + Delta-G solvation = -2462.009973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93810 -37.85383 -37.10538 -34.74104 -32.72661 -32.24126 -28.99123 -27.14209 -25.95804 -23.51867 -23.22219 -21.59815 -19.18023 -18.58666 -17.24152 -16.83018 -16.49627 -16.20199 -15.61880 -15.16032 -14.78499 -14.62430 -14.30627 -14.01594 -13.45648 -13.43241 -13.07328 -12.76385 -12.70784 -12.45368 -12.43389 -12.25490 -12.03252 -11.40485 -11.21096 -10.68581 -9.82919 -9.33376 -9.14913 -8.23993 -6.36202 0.28754 0.40923 1.41271 1.43270 1.55148 2.39183 2.64267 3.09364 3.36877 3.63090 3.85921 3.95619 4.05337 4.33779 4.46737 4.52456 4.66397 4.83667 4.88883 4.92291 5.04580 5.13241 5.19864 5.26103 5.40631 5.57329 5.58253 5.68545 5.95112 5.99129 6.36324 6.62197 6.78948 6.85789 7.34940 8.87827 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041984 B = 0.005596 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.754274 B = 5002.133560 C = 5197.339420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.107 4.107 4 C -0.144 4.144 5 C 0.086 3.914 6 O -0.512 6.512 7 C -0.111 4.111 8 C 0.103 3.897 9 N -0.675 5.675 10 C 0.207 3.793 11 C -0.536 4.536 12 H 0.066 0.934 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.977 3.023 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.264 1.264 19 C -0.105 4.105 20 H 0.077 0.923 21 H 0.069 0.931 22 H 0.085 0.915 23 H 0.156 0.844 24 H 0.146 0.854 25 H 0.401 0.599 26 H 0.067 0.933 27 H 0.021 0.979 28 H 0.332 0.668 29 H -0.039 1.039 30 H 0.001 0.999 31 H 0.266 0.734 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.659 15.172 3.116 18.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.125 4.125 4 C -0.162 4.162 5 C 0.041 3.959 6 O -0.324 6.324 7 C -0.112 4.112 8 C -0.026 4.026 9 N -0.306 5.306 10 C 0.079 3.921 11 C -0.574 4.574 12 H 0.084 0.916 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.801 3.199 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.188 1.188 19 C -0.123 4.123 20 H 0.096 0.904 21 H 0.088 0.912 22 H 0.103 0.897 23 H 0.174 0.826 24 H 0.164 0.836 25 H 0.258 0.742 26 H 0.085 0.915 27 H 0.039 0.961 28 H 0.149 0.851 29 H -0.022 1.022 30 H 0.019 0.981 31 H 0.075 0.925 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.220 14.712 3.522 18.834 hybrid contribution 1.655 -0.553 -0.500 1.815 sum -9.565 14.159 3.022 17.352 Atomic orbital electron populations 1.20818 0.88791 1.03826 1.03173 1.20269 0.97849 0.92371 0.99365 1.21252 0.93136 0.98681 0.99456 1.21590 0.95270 0.97357 1.01995 1.18555 0.83015 0.92351 1.01968 1.84739 1.16382 1.96455 1.34834 1.20209 0.94883 0.93999 1.02133 1.20686 0.96940 0.94285 0.90657 1.60678 1.40966 1.05194 1.23749 1.19247 0.90038 0.87129 0.95642 1.21503 1.32682 1.06567 0.96672 0.91585 1.25988 0.96315 0.95366 1.02029 1.70097 1.40813 1.11365 1.35219 0.85276 0.78746 0.77329 0.78595 1.19550 1.20691 1.18794 1.21013 0.92314 0.99023 0.99967 0.90393 0.91181 0.89660 0.82596 0.83647 0.74157 0.91459 0.96075 0.85079 1.02176 0.98102 0.92536 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.01 71.23 0.71 -0.99 16 2 C -0.10 -2.23 5.88 -19.85 -0.12 -2.34 16 3 C -0.11 -2.22 9.69 22.25 0.22 -2.00 16 4 C -0.14 -3.45 9.99 22.37 0.22 -3.23 16 5 C 0.09 2.60 6.56 22.51 0.15 2.75 16 6 O -0.51 -15.58 12.46 -92.32 -1.15 -16.74 16 7 C -0.11 -3.69 5.44 -19.77 -0.11 -3.80 16 8 C 0.10 4.09 5.44 85.56 0.47 4.56 16 9 N -0.68 -30.48 6.48 -521.96 -3.38 -33.86 16 10 C 0.21 11.49 5.44 85.56 0.47 11.96 16 11 C -0.54 -31.04 9.32 25.60 0.24 -30.80 16 12 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 13 C 0.00 0.07 5.46 84.65 0.46 0.54 16 14 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 15 Si 0.98 44.44 29.54 68.60 2.03 46.47 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 19 C -0.10 -2.99 9.32 22.26 0.21 -2.78 16 20 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 21 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 22 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 23 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 24 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 25 H 0.40 9.62 8.41 -74.06 -0.62 8.99 16 26 H 0.07 2.66 7.95 -2.39 -0.02 2.64 16 27 H 0.02 0.89 8.01 -2.39 -0.02 0.87 16 28 H 0.33 13.92 7.54 -89.70 -0.68 13.24 16 29 H -0.04 -2.36 8.14 -2.39 -0.02 -2.38 16 30 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 31 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.13 3.46 8.00 -2.91 -0.02 3.43 16 Total: -1.00 -68.57 278.37 0.52 -68.05 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -0.18 Total: 19.20 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 2.91 Total: -26.15 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -3.10 Total: -90.84 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -1.15 Total: -16.74 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -68.57 0.52 -68.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070955074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.278 kcal (2) G-P(sol) polarization free energy of solvation -68.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds