Wall clock time and date at job start Sun Mar 29 2020 22:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50707 * 119.94209 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47298 * 20.00139 * 7 6 5 9 9 C 1.53001 * 109.46911 * 259.99953 * 7 6 5 10 10 N 1.46505 * 109.46938 * 140.00236 * 7 6 5 11 11 C 1.36930 * 120.00001 * 205.00263 * 10 7 6 12 12 H 1.07999 * 120.00384 * 359.97438 * 11 10 7 13 13 C 1.38809 * 120.00123 * 180.02562 * 11 10 7 14 14 N 1.31623 * 120.00331 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00229 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47390 * 59.99612 * 15 13 11 17 17 H 1.48504 * 109.47513 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47167 * 299.99374 * 15 13 11 19 19 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 20 20 C 1.38137 * 120.05826 * 0.02562 * 19 6 5 21 21 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 22 22 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 24 24 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 25 25 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 26 26 H 1.09003 * 109.47353 * 299.99745 * 9 7 6 27 27 H 1.08998 * 109.47160 * 60.00784 * 9 7 6 28 28 H 1.09007 * 109.46414 * 180.02562 * 9 7 6 29 29 H 0.96999 * 119.99988 * 24.99758 * 10 7 6 30 30 H 0.96995 * 120.00643 * 179.97438 * 14 13 11 31 31 H 1.08007 * 119.96697 * 180.02562 * 19 6 5 32 32 H 1.07992 * 120.03165 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0119 8 1 5.0099 4.9030 -0.3677 9 6 4.0009 5.5902 1.4072 10 7 3.2610 5.9318 -0.8987 11 6 3.9130 6.9902 -1.4730 12 1 4.9617 7.1520 -1.2718 13 6 3.2259 7.8558 -2.3128 14 7 1.9477 7.6590 -2.5577 15 14 4.1151 9.3000 -3.0956 16 1 5.2325 8.7975 -3.9348 17 1 3.1658 10.0656 -3.9430 18 1 4.6541 10.1850 -2.0318 19 6 1.9211 3.6048 -0.0001 20 6 1.2915 2.3752 0.0053 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 4.0209 0.3800 -0.0014 25 1 5.1345 2.5750 -0.0108 26 1 2.9770 5.7059 1.7631 27 1 4.5404 4.9108 2.0670 28 1 4.4954 6.5617 1.4024 29 1 2.3190 5.7867 -1.0792 30 1 1.4674 8.2641 -3.1442 31 1 1.3342 4.5115 -0.0001 32 1 0.2130 2.3202 0.0099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083824220.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:33 Heat of formation + Delta-G solvation = -24.331589 kcal Electronic energy + Delta-G solvation = -14579.216992 eV Core-core repulsion = 12118.527124 eV Total energy + Delta-G solvation = -2460.689868 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.06847 -38.98368 -36.59354 -33.99067 -31.99156 -31.01932 -29.52267 -27.97883 -25.92714 -24.17513 -23.09699 -21.23566 -19.45679 -18.93871 -17.13471 -16.87579 -16.59046 -16.14917 -15.56237 -15.33613 -14.62448 -14.50712 -14.31615 -14.06127 -13.47360 -13.41697 -13.05932 -12.75768 -12.72012 -12.51686 -12.21662 -11.89631 -11.79199 -11.60047 -11.52028 -10.96225 -9.89747 -9.06626 -8.94168 -7.92518 -5.20903 0.44386 0.51425 1.48238 1.51441 1.57228 2.41912 2.57615 2.85715 3.41796 3.88208 3.93361 4.03821 4.06058 4.36133 4.40758 4.49149 4.55324 4.60936 4.74464 4.78268 4.82029 5.03527 5.09072 5.18611 5.35942 5.42242 5.51614 5.54602 5.83408 5.86054 6.29843 6.48634 7.35667 8.11146 8.35433 9.31252 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042802 B = 0.006318 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.017038 B = 4430.403745 C = 4760.951597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.109 3.891 4 C -0.154 4.154 5 C -0.078 4.078 6 C -0.122 4.122 7 C 0.205 3.795 8 H 0.055 0.945 9 C -0.148 4.148 10 N -0.736 5.736 11 C -0.239 4.239 12 H 0.078 0.922 13 C -0.077 4.077 14 N -0.973 5.973 15 Si 0.973 3.027 16 H -0.278 1.278 17 H -0.297 1.297 18 H -0.277 1.277 19 C -0.083 4.083 20 C -0.208 4.208 21 H 0.056 0.944 22 H 0.124 0.876 23 H 0.062 0.938 24 H 0.150 0.850 25 H 0.148 0.852 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.373 0.627 30 H 0.250 0.750 31 H 0.108 0.892 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -14.081 7.020 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.064 3.936 4 C -0.173 4.173 5 C -0.097 4.097 6 C -0.123 4.123 7 C 0.097 3.903 8 H 0.073 0.927 9 C -0.208 4.208 10 N -0.377 5.377 11 C -0.371 4.371 12 H 0.096 0.904 13 C -0.269 4.269 14 N -0.624 5.624 15 Si 0.802 3.198 16 H -0.204 1.204 17 H -0.223 1.223 18 H -0.203 1.203 19 C -0.101 4.101 20 C -0.226 4.226 21 H 0.075 0.925 22 H 0.142 0.858 23 H 0.080 0.920 24 H 0.167 0.833 25 H 0.166 0.834 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.207 0.793 30 H 0.059 0.941 31 H 0.126 0.874 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.076 -14.156 6.972 15.780 hybrid contribution -0.518 1.245 -0.656 1.500 sum -0.442 -12.911 6.316 14.380 Atomic orbital electron populations 1.23311 0.76827 1.05521 1.01929 1.86014 1.23151 1.26427 1.88938 1.19136 0.92802 0.84248 0.97443 1.20616 0.91449 0.98894 1.06296 1.21040 1.00730 0.90355 0.97534 1.20214 0.94055 0.95694 1.02324 1.19332 0.94430 0.85990 0.90567 0.92677 1.22259 1.00794 1.00483 0.97271 1.42741 1.10243 1.29898 1.54812 1.19634 0.94453 1.02722 1.20268 0.90412 1.25547 0.96740 1.02620 1.02005 1.69815 1.09350 1.40711 1.42496 0.85210 0.77175 0.79272 0.78101 1.20426 1.22337 1.20334 1.20800 0.94631 0.97185 0.97526 1.21333 1.00793 0.91781 1.08722 0.92537 0.85810 0.91963 0.83277 0.83390 0.94236 0.91178 0.93856 0.79350 0.94107 0.87383 0.84071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -8.44 10.50 -92.47 -0.97 -9.41 16 3 C 0.11 3.17 6.69 22.51 0.15 3.32 16 4 C -0.15 -4.30 9.99 22.37 0.22 -4.08 16 5 C -0.08 -2.36 9.66 22.25 0.22 -2.14 16 6 C -0.12 -4.42 4.96 -19.85 -0.10 -4.52 16 7 C 0.20 8.37 3.09 44.25 0.14 8.50 16 8 H 0.06 2.22 7.94 -2.39 -0.02 2.20 16 9 C -0.15 -5.42 9.47 71.98 0.68 -4.74 16 10 N -0.74 -37.96 5.07 -326.49 -1.66 -39.62 16 11 C -0.24 -13.42 9.93 84.03 0.83 -12.58 16 12 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 13 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 14 N -0.97 -60.38 13.06 21.65 0.28 -60.10 16 15 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 17 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 C -0.08 -3.01 9.05 22.25 0.20 -2.81 16 20 C -0.21 -6.39 9.04 22.36 0.20 -6.19 16 21 H 0.06 0.98 7.67 -2.39 -0.02 0.96 16 22 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 0.98 7.65 -2.39 -0.02 0.97 16 24 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 25 H 0.15 3.69 8.03 -2.91 -0.02 3.67 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.37 20.61 6.06 -92.71 -0.56 20.05 16 30 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.11 4.30 6.91 -2.91 -0.02 4.28 16 32 H 0.14 3.65 6.30 -2.91 -0.02 3.64 16 Total: -1.00 -66.36 274.01 4.36 -62.01 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.55 Total: 26.37 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 4.13 Total: -27.83 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -1.37 Total: -99.71 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.97 Total: -9.41 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -66.36 4.36 -62.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083824220.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.675 kcal (2) G-P(sol) polarization free energy of solvation -66.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds