Wall clock time and date at job start Sun Mar 29 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33238 * 125.52503 * 2 1 4 4 C 1.30831 * 109.83037 * 179.79909 * 3 2 1 5 5 C 1.50695 * 125.96639 * 180.23634 * 4 3 2 6 6 N 1.34436 * 108.07544 * 0.37467 * 4 3 2 7 7 C 1.46497 * 126.82129 * 179.89376 * 6 4 3 8 8 C 1.53004 * 109.47239 * 273.40049 * 7 6 4 9 9 C 1.50696 * 115.56058 * 320.43912 * 8 7 6 10 10 H 1.07999 * 119.99651 * 99.45448 * 9 8 7 11 11 C 1.37874 * 120.00099 * 279.44715 * 9 8 7 12 12 N 1.31509 * 120.00142 * 7.56006 * 11 9 8 13 13 Si 1.86803 * 120.00050 * 187.55269 * 11 9 8 14 14 H 1.48501 * 109.46725 * 60.00409 * 13 11 9 15 15 H 1.48498 * 109.47235 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47215 * 300.00487 * 13 11 9 17 17 C 1.53002 * 117.49652 * 174.74933 * 8 7 6 18 18 C 1.52998 * 117.49703 * 106.12927 * 8 7 6 19 19 N 1.30713 * 125.52693 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.47132 * 269.95940 * 1 2 3 21 21 H 1.09002 * 109.46908 * 29.96142 * 1 2 3 22 22 H 1.08999 * 109.46785 * 149.96107 * 1 2 3 23 23 H 1.08997 * 109.47317 * 270.16816 * 5 4 3 24 24 H 1.09000 * 109.47077 * 30.16733 * 5 4 3 25 25 H 1.09005 * 109.47533 * 150.16387 * 5 4 3 26 26 H 1.09001 * 109.46664 * 153.40380 * 7 6 4 27 27 H 1.08994 * 109.47551 * 33.40620 * 7 6 4 28 28 H 0.96999 * 120.00246 * 174.96393 * 12 11 9 29 29 H 1.09001 * 117.49484 * 145.02414 * 17 8 7 30 30 H 1.08995 * 117.50208 * 0.02562 * 17 8 7 31 31 H 1.09005 * 117.49833 * 0.02562 * 18 8 7 32 32 H 1.08998 * 117.50137 * 214.98440 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0844 0.0000 4 6 3.5407 0.7305 0.0043 5 6 4.7227 1.6652 0.0108 6 7 3.5966 -0.6127 -0.0011 7 6 4.8048 -1.4412 -0.0013 8 6 5.2778 -1.6531 -1.4408 9 6 4.1879 -1.8783 -2.4569 10 1 3.8549 -1.0625 -3.0813 11 6 3.6161 -3.1259 -2.5894 12 7 3.9128 -4.0795 -1.7338 13 14 2.4197 -3.4616 -3.9842 14 1 3.1009 -3.2392 -5.2848 15 1 1.9494 -4.8679 -3.9053 16 1 1.2574 -2.5443 -3.8709 17 6 6.6008 -2.3932 -1.6480 18 6 6.5206 -0.8856 -1.8962 19 7 2.2666 -1.0638 -0.0005 20 1 -0.3633 -0.0007 1.0276 21 1 -0.3633 0.8904 -0.5132 22 1 -0.3633 -0.8896 -0.5144 23 1 5.0099 1.8950 -1.0152 24 1 4.4545 2.5865 0.5280 25 1 5.5587 1.1905 0.5245 26 1 4.5834 -2.4064 0.4542 27 1 5.5881 -0.9416 0.5688 28 1 3.4565 -4.9340 -1.7824 29 1 6.6828 -3.0430 -2.5193 30 1 7.1340 -2.7295 -0.7588 31 1 7.0015 -0.2301 -1.1701 32 1 6.5499 -0.5435 -2.9307 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862399.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:06 Heat of formation + Delta-G solvation = 104.140003 kcal Electronic energy + Delta-G solvation = -15430.901293 eV Core-core repulsion = 13008.075122 eV Total energy + Delta-G solvation = -2422.826171 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.18991 -36.88674 -33.20510 -31.98191 -31.74756 -29.08718 -27.70279 -25.64808 -24.81468 -21.30849 -20.21154 -19.73358 -19.10893 -16.51073 -15.40569 -15.09489 -14.57811 -13.83328 -13.67483 -13.32844 -13.10256 -12.86796 -12.31580 -12.10987 -12.00718 -11.61410 -11.60304 -11.05332 -10.94811 -10.73697 -10.58013 -10.24717 -9.97299 -9.15170 -8.97259 -8.71610 -8.55799 -8.30036 -8.20117 -6.05987 -4.10490 2.58234 3.30573 3.33198 3.35288 3.39824 3.68388 4.41712 4.72729 5.09514 5.21025 5.31847 5.43106 5.65851 5.80817 5.87514 5.94663 6.00299 6.09500 6.20131 6.24268 6.31342 6.46222 6.55015 6.70570 6.89462 7.15837 7.24976 7.33005 7.39611 7.81580 7.87481 8.33124 8.86337 9.03045 9.56584 11.03343 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021372 B = 0.014483 C = 0.009911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.825160 B = 1932.863386 C = 2824.391773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.181 3.819 3 N -0.559 5.559 4 C 0.255 3.745 5 C -0.066 4.066 6 N -0.320 5.320 7 C 0.164 3.836 8 C 0.030 3.970 9 C -0.491 4.491 10 H 0.052 0.948 11 C 0.088 3.912 12 N -0.873 5.873 13 Si 0.886 3.114 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.277 1.277 17 C -0.154 4.154 18 C -0.209 4.209 19 N -0.277 5.277 20 H 0.071 0.929 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.261 0.739 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 6.669 4.020 7.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.101 4.101 3 N -0.290 5.290 4 C -0.021 4.021 5 C -0.125 4.125 6 N -0.109 5.109 7 C 0.042 3.958 8 C 0.028 3.972 9 C -0.529 4.529 10 H 0.070 0.930 11 C -0.117 4.117 12 N -0.509 5.509 13 Si 0.714 3.286 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.192 4.192 18 C -0.246 4.246 19 N -0.106 5.106 20 H 0.090 0.910 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.816 5.966 4.037 7.249 hybrid contribution -0.351 -0.382 -0.878 1.020 sum 0.464 5.584 3.159 6.432 Atomic orbital electron populations 1.19880 0.85304 1.03110 1.02413 1.23998 0.97721 0.86496 1.01856 1.70125 0.99941 1.31378 1.27544 1.23934 0.94753 0.84575 0.98820 1.20196 0.91703 0.96732 1.03890 1.49959 1.05881 1.04609 1.50431 1.21521 0.80568 0.94388 0.99325 1.19123 0.88051 0.98455 0.91559 1.20058 1.19556 0.94971 1.18268 0.92968 1.24793 0.95589 0.95783 0.95531 1.69891 1.40992 1.04863 1.35175 0.86746 0.81695 0.77304 0.82854 1.20376 1.21192 1.20203 1.22578 1.02583 0.92658 1.01394 1.23101 1.06109 0.94640 1.00793 1.78126 0.87004 1.21843 1.23648 0.91023 0.90592 0.90715 0.89609 0.89732 0.90761 0.88381 0.91818 0.92886 0.89772 0.91536 0.91425 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.79 10.51 36.01 0.38 -0.41 16 2 C 0.18 3.92 8.14 -156.86 -1.28 2.65 16 3 N -0.56 -11.94 11.19 -8.16 -0.09 -12.03 16 4 C 0.26 5.16 7.98 -155.69 -1.24 3.92 16 5 C -0.07 -0.97 10.21 36.00 0.37 -0.60 16 6 N -0.32 -7.19 2.96 -58.34 -0.17 -7.36 16 7 C 0.16 3.53 6.34 -4.04 -0.03 3.51 16 8 C 0.03 0.68 1.68 -155.66 -0.26 0.42 16 9 C -0.49 -13.27 8.09 -34.44 -0.28 -13.54 16 10 H 0.05 1.50 7.83 -52.49 -0.41 1.09 16 11 C 0.09 2.41 5.41 -17.82 -0.10 2.31 16 12 N -0.87 -24.40 13.16 55.43 0.73 -23.67 16 13 Si 0.89 21.95 29.55 -169.99 -5.02 16.93 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 17 C -0.15 -3.31 9.76 -26.73 -0.26 -3.57 16 18 C -0.21 -4.13 9.88 -26.73 -0.26 -4.40 16 19 N -0.28 -6.71 12.65 32.42 0.41 -6.30 16 20 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 21 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 24 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.07 0.95 7.20 -51.93 -0.37 0.57 16 26 H 0.10 2.32 8.14 -51.93 -0.42 1.90 16 27 H 0.06 1.13 7.02 -51.93 -0.36 0.76 16 28 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 29 H 0.08 1.96 8.14 -51.93 -0.42 1.53 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 32 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 LS Contribution 280.53 15.07 4.23 4.23 Total: -1.00 -31.18 280.53 -7.39 -38.57 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -4.51 Total: -0.64 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -2.96 Total: -9.72 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.88 Total: -49.37 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.18 -7.39 -38.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862399.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.709 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds