Wall clock time and date at job start Sun Mar 29 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33238 * 125.52503 * 2 1 4 4 C 1.30831 * 109.83037 * 179.79909 * 3 2 1 5 5 C 1.50695 * 125.96639 * 180.23634 * 4 3 2 6 6 N 1.34436 * 108.07544 * 0.37467 * 4 3 2 7 7 C 1.46497 * 126.82129 * 179.89376 * 6 4 3 8 8 C 1.53004 * 109.47239 * 273.40049 * 7 6 4 9 9 C 1.50696 * 115.56058 * 320.43912 * 8 7 6 10 10 H 1.07999 * 119.99651 * 99.45448 * 9 8 7 11 11 C 1.37874 * 120.00099 * 279.44715 * 9 8 7 12 12 N 1.31509 * 120.00142 * 7.56006 * 11 9 8 13 13 Si 1.86803 * 120.00050 * 187.55269 * 11 9 8 14 14 H 1.48501 * 109.46725 * 60.00409 * 13 11 9 15 15 H 1.48498 * 109.47235 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47215 * 300.00487 * 13 11 9 17 17 C 1.53002 * 117.49652 * 174.74933 * 8 7 6 18 18 C 1.52998 * 117.49703 * 106.12927 * 8 7 6 19 19 N 1.30713 * 125.52693 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.47132 * 269.95940 * 1 2 3 21 21 H 1.09002 * 109.46908 * 29.96142 * 1 2 3 22 22 H 1.08999 * 109.46785 * 149.96107 * 1 2 3 23 23 H 1.08997 * 109.47317 * 270.16816 * 5 4 3 24 24 H 1.09000 * 109.47077 * 30.16733 * 5 4 3 25 25 H 1.09005 * 109.47533 * 150.16387 * 5 4 3 26 26 H 1.09001 * 109.46664 * 153.40380 * 7 6 4 27 27 H 1.08994 * 109.47551 * 33.40620 * 7 6 4 28 28 H 0.96999 * 120.00246 * 174.96393 * 12 11 9 29 29 H 1.09001 * 117.49484 * 145.02414 * 17 8 7 30 30 H 1.08995 * 117.50208 * 0.02562 * 17 8 7 31 31 H 1.09005 * 117.49833 * 0.02562 * 18 8 7 32 32 H 1.08998 * 117.50137 * 214.98440 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0844 0.0000 4 6 3.5407 0.7305 0.0043 5 6 4.7227 1.6652 0.0108 6 7 3.5966 -0.6127 -0.0011 7 6 4.8048 -1.4412 -0.0013 8 6 5.2778 -1.6531 -1.4408 9 6 4.1879 -1.8783 -2.4569 10 1 3.8549 -1.0625 -3.0813 11 6 3.6161 -3.1259 -2.5894 12 7 3.9128 -4.0795 -1.7338 13 14 2.4197 -3.4616 -3.9842 14 1 3.1009 -3.2392 -5.2848 15 1 1.9494 -4.8679 -3.9053 16 1 1.2574 -2.5443 -3.8709 17 6 6.6008 -2.3932 -1.6480 18 6 6.5206 -0.8856 -1.8962 19 7 2.2666 -1.0638 -0.0005 20 1 -0.3633 -0.0007 1.0276 21 1 -0.3633 0.8904 -0.5132 22 1 -0.3633 -0.8896 -0.5144 23 1 5.0099 1.8950 -1.0152 24 1 4.4545 2.5865 0.5280 25 1 5.5587 1.1905 0.5245 26 1 4.5834 -2.4064 0.4542 27 1 5.5881 -0.9416 0.5688 28 1 3.4565 -4.9340 -1.7824 29 1 6.6828 -3.0430 -2.5193 30 1 7.1340 -2.7295 -0.7588 31 1 7.0015 -0.2301 -1.1701 32 1 6.5499 -0.5435 -2.9307 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862399.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:06 Heat of formation + Delta-G solvation = 86.188895 kcal Electronic energy + Delta-G solvation = -15431.679711 eV Core-core repulsion = 13008.075122 eV Total energy + Delta-G solvation = -2423.604589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.77464 -38.60366 -34.76913 -34.00580 -33.26743 -30.45163 -29.18566 -27.60682 -26.45356 -22.94079 -21.83319 -21.30796 -20.85985 -18.33590 -17.10628 -16.80124 -16.54018 -15.46880 -15.20104 -14.92416 -14.59862 -14.14322 -13.77898 -13.67048 -13.39576 -13.16469 -13.06918 -12.96462 -12.86499 -12.48555 -12.34738 -11.94639 -11.73122 -10.92909 -10.71639 -10.61056 -10.27821 -10.00995 -9.90136 -8.14548 -6.20829 1.00178 1.29789 1.32414 1.37336 1.77800 2.11656 2.37943 3.16792 3.35516 3.43100 3.81898 4.04691 4.23120 4.33625 4.51399 4.60473 4.64266 4.75379 4.78321 4.83713 4.94264 5.00201 5.08172 5.14713 5.24952 5.49960 5.61120 5.66854 5.74400 5.83359 6.23158 6.41531 6.78345 7.42723 7.46953 8.93060 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021372 B = 0.014483 C = 0.009911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.825160 B = 1932.863386 C = 2824.391773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C 0.174 3.826 3 N -0.577 5.577 4 C 0.256 3.744 5 C -0.066 4.066 6 N -0.336 5.336 7 C 0.173 3.827 8 C -0.004 4.004 9 C -0.493 4.493 10 H 0.025 0.975 11 C 0.050 3.950 12 N -0.892 5.892 13 Si 0.924 3.076 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.287 1.287 17 C -0.157 4.157 18 C -0.176 4.176 19 N -0.334 5.334 20 H 0.096 0.904 21 H 0.092 0.908 22 H 0.071 0.929 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.258 0.742 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 8.321 4.608 9.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.108 4.108 3 N -0.308 5.308 4 C -0.019 4.019 5 C -0.125 4.125 6 N -0.124 5.124 7 C 0.051 3.949 8 C -0.005 4.005 9 C -0.531 4.531 10 H 0.044 0.956 11 C -0.152 4.152 12 N -0.529 5.529 13 Si 0.751 3.249 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.213 1.213 17 C -0.195 4.195 18 C -0.213 4.213 19 N -0.164 5.164 20 H 0.115 0.885 21 H 0.111 0.889 22 H 0.089 0.911 23 H 0.111 0.889 24 H 0.126 0.874 25 H 0.118 0.882 26 H 0.085 0.915 27 H 0.126 0.874 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.872 7.618 4.613 9.100 hybrid contribution -0.678 -0.816 -1.075 1.511 sum 1.194 6.801 3.538 7.759 Atomic orbital electron populations 1.20060 0.82530 1.03731 1.04253 1.24865 0.99562 0.86128 1.00206 1.70196 1.00651 1.31346 1.28635 1.25032 0.96014 0.84441 0.96439 1.20484 0.90270 0.96687 1.05017 1.50003 1.05426 1.05512 1.51494 1.21409 0.81379 0.93760 0.98368 1.19144 0.87965 1.01608 0.91775 1.20161 1.20425 0.93913 1.18608 0.95638 1.25258 0.96917 0.96074 0.96934 1.69956 1.41920 1.04881 1.36189 0.86161 0.80126 0.77045 0.81549 1.19770 1.20643 1.21318 1.22524 1.01837 0.93847 1.01296 1.23135 1.02774 0.93900 1.01485 1.78041 0.88421 1.23846 1.26101 0.88518 0.88901 0.91050 0.88883 0.87381 0.88215 0.91529 0.87374 0.93321 0.92447 0.89341 0.87045 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.49 10.51 71.24 0.75 -0.75 16 2 C 0.17 7.48 8.14 138.63 1.13 8.61 16 3 N -0.58 -23.90 11.19 -179.73 -2.01 -25.91 16 4 C 0.26 9.85 7.98 138.22 1.10 10.95 16 5 C -0.07 -1.66 10.21 71.23 0.73 -0.94 16 6 N -0.34 -14.78 2.96 -338.50 -1.00 -15.78 16 7 C 0.17 7.18 6.34 86.38 0.55 7.72 16 8 C 0.00 -0.16 1.68 -52.93 -0.09 -0.25 16 9 C -0.49 -26.83 8.09 25.60 0.21 -26.63 16 10 H 0.03 1.48 7.83 -2.91 -0.02 1.46 16 11 C 0.05 2.79 5.41 84.65 0.46 3.25 16 12 N -0.89 -50.73 13.16 21.45 0.28 -50.45 16 13 Si 0.92 45.65 29.55 68.60 2.03 47.68 16 14 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 15 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 16 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 17 C -0.16 -6.49 9.76 30.59 0.30 -6.19 16 18 C -0.18 -6.38 9.88 30.59 0.30 -6.08 16 19 N -0.33 -16.34 12.65 -51.33 -0.65 -16.99 16 20 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 21 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 22 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.10 2.01 7.20 -2.38 -0.02 2.00 16 26 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 27 H 0.11 3.42 7.02 -2.39 -0.02 3.40 16 28 H 0.26 14.35 8.32 -92.71 -0.77 13.58 16 29 H 0.06 2.65 8.14 -2.39 -0.02 2.64 16 30 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 31 H 0.11 3.08 8.08 -2.38 -0.02 3.06 16 32 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -68.80 280.53 5.18 -63.62 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.10 Total: 8.11 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 5.43 Total: -10.29 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -3.38 Total: -109.12 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -68.80 5.18 -63.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862399.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.808 kcal (2) G-P(sol) polarization free energy of solvation -68.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds