Wall clock time and date at job start Sun Mar 29 2020 22:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99865 * 2 1 4 4 C 1.50701 * 109.47419 * 66.04365 * 3 2 1 5 5 H 1.07998 * 119.99528 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99809 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00177 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99503 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46779 * 90.00386 * 8 6 4 10 10 H 1.48498 * 109.46883 * 210.00133 * 8 6 4 11 11 H 1.48493 * 109.47502 * 330.00576 * 8 6 4 12 12 C 1.46897 * 111.00052 * 236.04457 * 2 1 3 13 13 C 1.50707 * 109.47055 * 293.95574 * 12 2 1 14 14 C 1.38289 * 119.96864 * 269.97906 * 13 12 2 15 15 C 1.38240 * 120.10976 * 180.02562 * 14 13 12 16 16 C 1.38174 * 120.05836 * 359.67645 * 15 14 13 17 17 C 1.38709 * 119.93612 * 0.62068 * 16 15 14 18 18 O 1.35905 * 120.05346 * 179.68169 * 17 16 15 19 19 C 1.38116 * 119.97322 * 90.00238 * 13 12 2 20 20 H 1.09008 * 109.46953 * 183.95256 * 1 2 3 21 21 H 1.09000 * 109.47448 * 303.95652 * 1 2 3 22 22 H 1.09003 * 109.46949 * 63.96063 * 1 2 3 23 23 H 1.09003 * 109.46926 * 186.04686 * 3 2 1 24 24 H 1.09005 * 109.47175 * 306.04231 * 3 2 1 25 25 H 0.97000 * 120.00169 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47307 * 173.95279 * 12 2 1 27 27 H 1.09000 * 109.47236 * 53.94975 * 12 2 1 28 28 H 1.08002 * 119.94362 * 359.97438 * 14 13 12 29 29 H 1.08006 * 119.97243 * 179.97438 * 15 14 13 30 30 H 1.07996 * 120.03053 * 180.29714 * 16 15 14 31 31 H 0.96705 * 113.99576 * 269.72355 * 18 17 16 32 32 H 1.08003 * 120.03068 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0276 3.3492 1.5288 7 7 2.7128 4.0016 0.6152 8 14 1.5825 4.1870 3.1379 9 1 2.6586 3.9500 4.1335 10 1 1.4312 5.6467 2.9106 11 1 0.3042 3.6304 3.6488 12 6 1.9955 -0.7660 -1.1375 13 6 1.6369 -2.2205 -0.9728 14 6 2.4948 -3.0716 -0.3005 15 6 2.1691 -4.4064 -0.1481 16 6 0.9818 -4.8920 -0.6616 17 6 0.1225 -4.0416 -1.3417 18 8 -1.0428 -4.5182 -1.8534 19 6 0.4520 -2.7023 -1.4937 20 1 -0.3633 -1.0253 0.0708 21 1 -0.3634 0.5740 0.8524 22 1 -0.3633 0.4511 -0.9234 23 1 3.0797 1.3444 -0.1083 24 1 1.5611 1.9273 -0.8310 25 1 2.9874 4.9177 0.7771 26 1 3.0798 -0.6611 -1.1756 27 1 1.5611 -0.3873 -2.0628 28 1 3.4213 -2.6930 0.1055 29 1 2.8410 -5.0692 0.3770 30 1 0.7255 -5.9338 -0.5382 31 1 -0.9699 -4.8432 -2.7613 32 1 -0.2173 -2.0374 -2.0194 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086194144.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:10 Heat of formation + Delta-G solvation = -39.483943 kcal Electronic energy + Delta-G solvation = -14505.802913 eV Core-core repulsion = 12044.455990 eV Total energy + Delta-G solvation = -2461.346923 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.77224 -38.58807 -37.20274 -34.75037 -32.46551 -30.77404 -29.18670 -28.08220 -25.67198 -23.44651 -22.91409 -21.73142 -18.96160 -18.43774 -17.25180 -16.86989 -16.75897 -16.25642 -15.88900 -15.55307 -15.17064 -14.61086 -14.01722 -13.72131 -13.39229 -13.29171 -12.91020 -12.78319 -12.67275 -12.53594 -12.31098 -12.26303 -11.92478 -11.47585 -11.17898 -10.62757 -9.80370 -9.50179 -9.05366 -8.21483 -6.31760 0.34643 0.40187 1.41219 1.42700 1.53935 2.39876 2.69953 3.11021 3.26277 3.53385 3.85471 3.98057 4.21658 4.35551 4.47021 4.47468 4.64930 4.66831 4.72664 4.99612 5.02752 5.08858 5.15258 5.25113 5.47533 5.50428 5.62871 5.72530 5.95022 6.02295 6.27881 6.57396 6.83625 6.89542 7.37903 8.89597 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049681 B = 0.005670 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.456462 B = 4937.060390 C = 5015.347278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.542 5.542 3 C 0.206 3.794 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.090 3.910 13 C -0.062 4.062 14 C -0.122 4.122 15 C -0.100 4.100 16 C -0.151 4.151 17 C 0.098 3.902 18 O -0.509 6.509 19 C -0.151 4.151 20 H 0.070 0.930 21 H 0.057 0.943 22 H 0.012 0.988 23 H 0.008 0.992 24 H -0.036 1.036 25 H 0.265 0.735 26 H 0.076 0.924 27 H 0.032 0.968 28 H 0.127 0.873 29 H 0.154 0.846 30 H 0.149 0.851 31 H 0.409 0.591 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 -16.866 -4.607 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.080 3.920 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.190 1.190 12 C -0.038 4.038 13 C -0.063 4.063 14 C -0.140 4.140 15 C -0.118 4.118 16 C -0.169 4.169 17 C 0.054 3.946 18 O -0.322 6.322 19 C -0.170 4.170 20 H 0.088 0.912 21 H 0.075 0.925 22 H 0.030 0.970 23 H 0.027 0.973 24 H -0.018 1.018 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.144 0.856 29 H 0.172 0.828 30 H 0.167 0.833 31 H 0.267 0.733 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.901 -16.765 -3.683 17.408 hybrid contribution -0.162 1.265 -0.708 1.458 sum -3.063 -15.500 -4.391 16.398 Atomic orbital electron populations 1.22210 0.87840 1.00825 0.99699 1.62054 1.08075 1.15253 1.41194 1.19431 0.93912 0.83457 0.95172 1.21452 1.35024 0.97592 1.02300 0.92063 1.25903 0.94939 0.97945 1.00734 1.70078 1.39288 1.11958 1.36122 0.85368 0.78944 0.77263 0.78955 1.19727 1.20630 1.19022 1.21073 1.00275 0.90437 0.91993 1.19664 0.94630 0.94484 0.97501 1.21246 1.00325 0.93965 0.98484 1.21315 0.96753 0.95020 0.98673 1.21640 0.93982 1.00952 1.00326 1.18489 0.86479 0.91263 0.98382 1.84778 1.29305 1.82672 1.35450 1.21359 0.96731 0.95973 1.02985 0.91184 0.92461 0.96968 0.97343 1.01829 0.92603 0.90545 0.94939 0.85550 0.82844 0.83294 0.73251 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.77 8.95 127.69 1.14 2.91 16 2 N -0.54 -24.48 4.74 -931.62 -4.42 -28.90 16 3 C 0.21 11.27 4.72 85.56 0.40 11.67 16 4 C -0.53 -30.43 8.46 25.60 0.22 -30.21 16 5 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 6 C 0.00 0.16 5.46 84.66 0.46 0.63 16 7 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 8 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 C 0.09 3.35 5.12 85.56 0.44 3.79 16 13 C -0.06 -1.95 4.88 -19.88 -0.10 -2.05 16 14 C -0.12 -3.39 9.70 22.28 0.22 -3.17 16 15 C -0.10 -2.21 10.04 22.25 0.22 -1.98 16 16 C -0.15 -3.25 9.99 22.37 0.22 -3.02 16 17 C 0.10 2.42 6.70 22.51 0.15 2.57 16 18 O -0.51 -10.70 13.50 -92.48 -1.25 -11.95 16 19 C -0.15 -4.33 7.90 22.36 0.18 -4.16 16 20 H 0.07 2.59 6.17 -2.38 -0.01 2.58 16 21 H 0.06 2.54 6.76 -2.39 -0.02 2.53 16 22 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.01 0.49 7.93 -2.39 -0.02 0.47 16 24 H -0.04 -2.12 8.12 -2.38 -0.02 -2.14 16 25 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.08 2.83 7.87 -2.39 -0.02 2.81 16 27 H 0.03 1.19 8.06 -2.39 -0.02 1.17 16 28 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 29 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.41 4.24 9.06 -74.05 -0.67 3.57 16 32 H 0.12 3.42 8.03 -2.91 -0.02 3.40 16 Total: -1.00 -67.69 274.08 0.64 -67.05 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.44 Total: 6.38 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 3.56 Total: -23.03 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -4.13 Total: -85.26 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -1.25 Total: -11.95 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.69 0.64 -67.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086194144.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.564 kcal (2) G-P(sol) polarization free energy of solvation -67.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds