Wall clock time and date at job start Sun Mar 29 2020 22:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.50699 * 109.47144 * 66.05037 * 3 2 1 5 5 H 1.07997 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99750 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00346 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47199 * 89.99243 * 8 6 4 10 10 H 1.48492 * 109.47318 * 209.99694 * 8 6 4 11 11 H 1.48502 * 109.46903 * 329.99635 * 8 6 4 12 12 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 13 13 C 1.50697 * 109.47095 * 293.94952 * 12 2 1 14 14 C 1.38264 * 119.94602 * 269.72684 * 13 12 2 15 15 C 1.38146 * 120.05125 * 179.72365 * 14 13 12 16 16 C 1.38731 * 119.94724 * 0.57579 * 15 14 13 17 17 O 1.35895 * 120.05525 * 179.68057 * 16 15 14 18 18 C 1.38728 * 119.88718 * 359.70114 * 16 15 14 19 19 C 1.38147 * 119.94625 * 0.02562 * 18 16 15 20 20 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 21 21 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 22 22 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 23 23 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 24 24 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 25 25 H 0.96993 * 120.00117 * 180.02562 * 7 6 4 26 26 H 1.08992 * 109.47062 * 53.95734 * 12 2 1 27 27 H 1.09003 * 109.46753 * 173.95421 * 12 2 1 28 28 H 1.07996 * 119.97269 * 359.97438 * 14 13 12 29 29 H 1.08002 * 120.02512 * 180.25408 * 15 14 13 30 30 H 0.96704 * 114.00407 * 270.01632 * 17 16 15 31 31 H 1.08001 * 120.03018 * 179.97438 * 18 16 15 32 32 H 1.07999 * 119.97592 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5818 4.1873 3.1377 9 1 2.6583 3.9513 4.1329 10 1 1.4292 5.6468 2.9103 11 1 0.3040 3.6298 3.6492 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 2.4977 -3.0720 -0.3052 15 6 2.1686 -4.4044 -0.1479 16 6 0.9791 -4.8904 -0.6708 17 8 0.6563 -6.2022 -0.5230 18 6 0.1200 -4.0351 -1.3453 19 6 0.4509 -2.7023 -1.4950 20 1 -0.3632 -1.0253 0.0709 21 1 -0.3634 0.5739 0.8525 22 1 -0.3633 0.4512 -0.9233 23 1 3.0797 1.3444 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 2.9863 4.9181 0.7769 26 1 1.5612 -0.3872 -2.0627 27 1 3.0798 -0.6611 -1.1756 28 1 3.4260 -2.6943 0.0972 29 1 2.8393 -5.0684 0.3773 30 1 0.9733 -6.7685 -1.2399 31 1 -0.8065 -4.4111 -1.7537 32 1 -0.2174 -2.0361 -2.0203 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087178036.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:14 Heat of formation + Delta-G solvation = -16.979954 kcal Electronic energy + Delta-G solvation = -14439.123033 eV Core-core repulsion = 11978.751956 eV Total energy + Delta-G solvation = -2460.371077 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.67987 -37.38440 -35.71799 -32.59678 -30.87905 -30.36623 -27.09523 -26.32547 -23.72459 -22.59833 -21.37036 -20.12753 -18.35607 -16.45575 -15.67497 -15.63161 -15.16129 -14.81392 -14.27617 -13.83604 -13.69161 -13.28985 -12.85356 -12.10798 -11.99984 -11.89951 -11.43646 -11.22338 -10.96870 -10.86938 -10.60290 -10.44946 -10.34392 -9.85573 -9.23256 -8.82694 -8.45689 -8.32239 -7.24673 -6.02969 -4.04169 1.36385 1.50081 3.32792 3.38528 3.42520 3.74653 4.25078 4.43954 4.97914 5.07229 5.10713 5.26270 5.34215 5.55589 5.59766 5.89158 5.91834 6.12486 6.17656 6.24607 6.34707 6.45931 6.52328 6.76469 6.87529 6.95021 7.27077 7.32647 7.65513 7.79610 8.06901 8.18793 8.53626 9.03582 9.60052 11.07960 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055052 B = 0.005411 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.490040 B = 5173.206354 C = 5239.069037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.535 5.535 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.088 3.912 13 C -0.067 4.067 14 C -0.084 4.084 15 C -0.146 4.146 16 C 0.089 3.911 17 O -0.502 6.502 18 C -0.147 4.147 19 C -0.100 4.100 20 H 0.048 0.952 21 H 0.074 0.926 22 H 0.010 0.990 23 H 0.030 0.970 24 H -0.008 1.008 25 H 0.261 0.739 26 H 0.032 0.968 27 H 0.078 0.922 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.384 0.616 31 H 0.123 0.877 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 -15.105 -5.463 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.259 5.259 3 C 0.067 3.933 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.040 4.040 13 C -0.067 4.067 14 C -0.103 4.103 15 C -0.165 4.165 16 C 0.045 3.955 17 O -0.312 6.312 18 C -0.166 4.166 19 C -0.118 4.118 20 H 0.067 0.933 21 H 0.093 0.907 22 H 0.029 0.971 23 H 0.048 0.952 24 H 0.009 0.991 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.239 0.761 31 H 0.141 0.859 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.298 -14.933 -4.545 15.777 hybrid contribution -0.268 0.773 -0.309 0.875 sum -2.566 -14.160 -4.854 15.187 Atomic orbital electron populations 1.22288 0.88873 0.99809 1.00441 1.62150 1.07123 1.17620 1.38993 1.19764 0.95410 0.81362 0.96743 1.21164 1.34810 0.96890 1.01669 0.91831 1.24988 0.95308 0.97311 0.97002 1.69957 1.38456 1.11487 1.34031 0.86487 0.78898 0.78393 0.83582 1.20604 1.21322 1.19854 1.21062 1.00541 0.89082 0.93325 1.20040 0.94115 0.96039 0.96543 1.20971 0.99954 0.92211 0.97155 1.21375 0.96461 0.96605 1.02011 1.18435 0.93770 0.84040 0.99302 1.84835 1.80038 1.16128 1.50153 1.21311 1.00248 0.94200 1.00825 1.20978 0.96438 0.94653 0.99755 0.93314 0.90726 0.97143 0.95161 0.99061 0.92924 0.94958 0.90401 0.85356 0.85779 0.76101 0.85906 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 8.95 60.07 0.54 1.23 16 2 N -0.53 -11.71 4.74 -245.83 -1.17 -12.87 16 3 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 4 C -0.51 -14.34 8.46 -34.44 -0.29 -14.63 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.09 1.59 5.12 -4.98 -0.03 1.56 16 13 C -0.07 -1.05 4.88 -104.60 -0.51 -1.56 16 14 C -0.08 -1.24 9.69 -39.61 -0.38 -1.62 16 15 C -0.15 -1.94 9.99 -39.43 -0.39 -2.33 16 16 C 0.09 1.16 6.70 -39.22 -0.26 0.90 16 17 O -0.50 -5.67 13.50 -19.41 -0.26 -5.94 16 18 C -0.15 -1.91 9.99 -39.43 -0.39 -2.31 16 19 C -0.10 -1.41 7.96 -39.60 -0.32 -1.73 16 20 H 0.05 0.87 6.17 -51.93 -0.32 0.55 16 21 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 22 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 23 H 0.03 0.84 7.93 -51.93 -0.41 0.42 16 24 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 27 H 0.08 1.38 7.87 -51.93 -0.41 0.97 16 28 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.38 2.33 9.06 45.56 0.41 2.74 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.61 8.03 -52.49 -0.42 1.18 16 LS Contribution 274.07 15.07 4.13 4.13 Total: -1.00 -31.50 274.07 -7.28 -38.78 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -3.54 Total: -0.79 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -2.16 Total: -14.02 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.43 Total: -38.90 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.26 Total: -5.94 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.50 -7.28 -38.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087178036.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.803 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds