Wall clock time and date at job start Sun Mar 29 2020 22:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.50699 * 109.47144 * 66.05037 * 3 2 1 5 5 H 1.07997 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99750 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00346 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47199 * 89.99243 * 8 6 4 10 10 H 1.48492 * 109.47318 * 209.99694 * 8 6 4 11 11 H 1.48502 * 109.46903 * 329.99635 * 8 6 4 12 12 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 13 13 C 1.50697 * 109.47095 * 293.94952 * 12 2 1 14 14 C 1.38264 * 119.94602 * 269.72684 * 13 12 2 15 15 C 1.38146 * 120.05125 * 179.72365 * 14 13 12 16 16 C 1.38731 * 119.94724 * 0.57579 * 15 14 13 17 17 O 1.35895 * 120.05525 * 179.68057 * 16 15 14 18 18 C 1.38728 * 119.88718 * 359.70114 * 16 15 14 19 19 C 1.38147 * 119.94625 * 0.02562 * 18 16 15 20 20 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 21 21 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 22 22 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 23 23 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 24 24 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 25 25 H 0.96993 * 120.00117 * 180.02562 * 7 6 4 26 26 H 1.08992 * 109.47062 * 53.95734 * 12 2 1 27 27 H 1.09003 * 109.46753 * 173.95421 * 12 2 1 28 28 H 1.07996 * 119.97269 * 359.97438 * 14 13 12 29 29 H 1.08002 * 120.02512 * 180.25408 * 15 14 13 30 30 H 0.96704 * 114.00407 * 270.01632 * 17 16 15 31 31 H 1.08001 * 120.03018 * 179.97438 * 18 16 15 32 32 H 1.07999 * 119.97592 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5818 4.1873 3.1377 9 1 2.6583 3.9513 4.1329 10 1 1.4292 5.6468 2.9103 11 1 0.3040 3.6298 3.6492 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 2.4977 -3.0720 -0.3052 15 6 2.1686 -4.4044 -0.1479 16 6 0.9791 -4.8904 -0.6708 17 8 0.6563 -6.2022 -0.5230 18 6 0.1200 -4.0351 -1.3453 19 6 0.4509 -2.7023 -1.4950 20 1 -0.3632 -1.0253 0.0709 21 1 -0.3634 0.5739 0.8525 22 1 -0.3633 0.4512 -0.9233 23 1 3.0797 1.3444 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 2.9863 4.9181 0.7769 26 1 1.5612 -0.3872 -2.0627 27 1 3.0798 -0.6611 -1.1756 28 1 3.4260 -2.6943 0.0972 29 1 2.8393 -5.0684 0.3773 30 1 0.9733 -6.7685 -1.2399 31 1 -0.8065 -4.4111 -1.7537 32 1 -0.2174 -2.0361 -2.0203 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087178036.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:14 Heat of formation + Delta-G solvation = -39.397575 kcal Electronic energy + Delta-G solvation = -14440.095134 eV Core-core repulsion = 11978.751956 eV Total energy + Delta-G solvation = -2461.343178 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74858 -38.67885 -37.09831 -34.67952 -31.92995 -31.71776 -29.06317 -27.80887 -25.47108 -23.66789 -22.84777 -21.66887 -19.29306 -18.54887 -16.96063 -16.79398 -16.65857 -16.12338 -16.01220 -15.52952 -14.99894 -14.37777 -14.33711 -13.86393 -13.45235 -13.25525 -12.92349 -12.83229 -12.70304 -12.44365 -12.37488 -12.21065 -11.79699 -11.32933 -11.28418 -10.61983 -9.88083 -9.46481 -9.00297 -8.20758 -6.30923 0.29333 0.44973 1.41514 1.42919 1.54058 2.40222 2.68088 3.11771 3.33429 3.52363 3.89618 3.96872 4.12202 4.35081 4.45960 4.52792 4.66557 4.73374 4.78049 4.98464 5.06014 5.12847 5.16810 5.26294 5.40005 5.48777 5.64019 5.73986 5.93270 6.04006 6.30969 6.60273 6.84857 6.91485 7.38762 8.90223 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055052 B = 0.005411 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.490040 B = 5173.206354 C = 5239.069037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.544 5.544 3 C 0.207 3.793 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.265 1.265 12 C 0.091 3.909 13 C -0.088 4.088 14 C -0.094 4.094 15 C -0.149 4.149 16 C 0.097 3.903 17 O -0.508 6.508 18 C -0.148 4.148 19 C -0.102 4.102 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.014 0.986 23 H 0.007 0.993 24 H -0.035 1.035 25 H 0.265 0.735 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.143 0.857 30 H 0.409 0.591 31 H 0.146 0.854 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 -16.661 -4.884 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.268 5.268 3 C 0.081 3.919 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.190 1.190 12 C -0.036 4.036 13 C -0.088 4.088 14 C -0.112 4.112 15 C -0.168 4.168 16 C 0.052 3.948 17 O -0.321 6.321 18 C -0.166 4.166 19 C -0.120 4.120 20 H 0.092 0.908 21 H 0.074 0.926 22 H 0.033 0.967 23 H 0.025 0.975 24 H -0.017 1.017 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.145 0.855 29 H 0.160 0.840 30 H 0.268 0.732 31 H 0.164 0.836 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.253 -16.529 -3.987 17.311 hybrid contribution 0.030 1.108 -0.551 1.238 sum -3.224 -15.420 -4.538 16.395 Atomic orbital electron populations 1.22231 0.87695 1.01022 0.99776 1.62050 1.08267 1.15160 1.41354 1.19417 0.93833 0.83560 0.95133 1.21460 1.34959 0.97531 1.02352 0.92074 1.25896 0.94975 0.97966 1.00672 1.70078 1.39334 1.11948 1.36112 0.85380 0.78940 0.77286 0.79004 1.19845 1.20636 1.18969 1.21032 1.00114 0.90437 0.92027 1.19838 0.95633 0.94474 0.98879 1.21042 0.99934 0.92969 0.97281 1.21558 0.97098 0.96120 1.02006 1.18535 0.93244 0.84921 0.98078 1.84771 1.80172 1.15506 1.51678 1.21538 1.01054 0.93536 1.00478 1.21073 0.95862 0.95525 0.99549 0.90818 0.92634 0.96701 0.97537 1.01738 0.92629 0.94640 0.90957 0.85541 0.83951 0.73158 0.83650 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 8.95 127.69 1.14 2.78 16 2 N -0.54 -24.19 4.74 -931.66 -4.42 -28.61 16 3 C 0.21 11.19 4.72 85.56 0.40 11.60 16 4 C -0.52 -30.22 8.46 25.60 0.22 -30.00 16 5 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 6 C 0.00 0.17 5.46 84.66 0.46 0.63 16 7 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 8 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 C 0.09 3.34 5.12 85.56 0.44 3.78 16 13 C -0.09 -2.69 4.88 -19.85 -0.10 -2.79 16 14 C -0.09 -2.66 9.69 22.25 0.22 -2.44 16 15 C -0.15 -3.64 9.99 22.37 0.22 -3.42 16 16 C 0.10 2.24 6.70 22.51 0.15 2.39 16 17 O -0.51 -9.67 13.50 -92.36 -1.25 -10.92 16 18 C -0.15 -3.41 9.99 22.37 0.22 -3.18 16 19 C -0.10 -2.69 7.96 22.26 0.18 -2.51 16 20 H 0.07 2.55 6.17 -2.39 -0.01 2.54 16 21 H 0.05 2.40 6.76 -2.39 -0.02 2.39 16 22 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.01 0.38 7.93 -2.39 -0.02 0.36 16 24 H -0.04 -2.04 8.12 -2.39 -0.02 -2.06 16 25 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 26 H 0.04 1.26 8.06 -2.39 -0.02 1.24 16 27 H 0.07 2.65 7.87 -2.39 -0.02 2.64 16 28 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 29 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 30 H 0.41 3.41 9.06 -74.05 -0.67 2.74 16 31 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.13 3.17 8.03 -2.91 -0.02 3.15 16 Total: -1.00 -67.09 274.07 0.64 -66.45 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 0.44 Total: 5.79 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 3.56 Total: -23.17 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -4.14 Total: -84.84 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -1.25 Total: -10.92 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.09 0.64 -66.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087178036.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.054 kcal (2) G-P(sol) polarization free energy of solvation -67.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds