Wall clock time and date at job start Sun Mar 29 2020 22:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47440 * 2 1 4 4 C 1.36934 * 119.99981 * 275.65412 * 3 2 1 5 5 H 1.08000 * 120.00099 * 33.99109 * 4 3 2 6 6 C 1.38810 * 120.00380 * 213.98587 * 4 3 2 7 7 N 1.31623 * 119.99942 * 22.95968 * 6 4 3 8 8 Si 1.86801 * 120.00320 * 202.96354 * 6 4 3 9 9 H 1.48496 * 109.47066 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47222 * 119.99685 * 8 6 4 11 11 H 1.48498 * 109.47148 * 239.99832 * 8 6 4 12 12 C 1.46498 * 120.00260 * 95.65845 * 3 2 1 13 13 C 1.50700 * 109.46986 * 270.00361 * 12 3 2 14 14 C 1.38295 * 119.96830 * 270.01553 * 13 12 3 15 15 C 1.38244 * 120.11101 * 180.02562 * 14 13 12 16 16 C 1.38177 * 120.05514 * 359.68375 * 15 14 13 17 17 C 1.38709 * 119.93908 * 0.57254 * 16 15 14 18 18 O 1.35908 * 120.05335 * 179.72205 * 17 16 15 19 19 C 1.38119 * 119.97591 * 89.99870 * 13 12 3 20 20 H 1.08995 * 109.47345 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46824 * 300.00124 * 1 2 3 22 22 H 1.08998 * 109.46810 * 59.99879 * 1 2 3 23 23 H 1.09004 * 109.47120 * 239.99699 * 2 1 3 24 24 H 1.09001 * 109.47197 * 120.00466 * 2 1 3 25 25 H 0.96994 * 120.00139 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.47717 * 149.99863 * 12 3 2 27 27 H 1.09003 * 109.46947 * 29.99595 * 12 3 2 28 28 H 1.07998 * 119.94371 * 0.02562 * 14 13 12 29 29 H 1.08003 * 119.97391 * 179.97438 * 15 14 13 30 30 H 1.07999 * 120.02913 * 180.29674 * 16 15 14 31 31 H 0.96698 * 113.99966 * 269.72725 * 18 17 16 32 32 H 1.07996 * 120.02611 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1365 2.0656 -1.1801 5 1 1.4326 1.8885 -1.9798 6 6 3.1609 2.9871 -1.3486 7 7 4.2518 2.8993 -0.6175 8 14 2.9911 4.3518 -2.6128 9 1 1.6793 4.2312 -3.2982 10 1 3.0744 5.6695 -1.9330 11 1 4.0842 4.2401 -3.6116 12 6 2.3805 2.0301 1.2625 13 6 1.1717 2.7239 1.8355 14 6 0.9075 4.0397 1.5018 15 6 -0.2003 4.6792 2.0261 16 6 -1.0502 4.0027 2.8802 17 6 -0.7844 2.6845 3.2206 18 8 -1.6157 2.0187 4.0649 19 6 0.3283 2.0450 2.6932 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 4.9678 3.5429 -0.7354 26 1 3.1680 2.7618 1.0822 27 1 2.7368 1.2792 1.9678 28 1 1.5677 4.5685 0.8304 29 1 -0.4043 5.7069 1.7643 30 1 -1.9182 4.5012 3.2858 31 1 -1.3740 2.0973 4.9979 32 1 0.5352 1.0176 2.9536 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087178039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:10 Heat of formation + Delta-G solvation = -3.067959 kcal Electronic energy + Delta-G solvation = -15220.752910 eV Core-core repulsion = 12760.985103 eV Total energy + Delta-G solvation = -2459.767808 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.20189 -36.75233 -35.38900 -31.92514 -31.11063 -29.37465 -28.45614 -25.61526 -23.53077 -21.96400 -21.11499 -20.13303 -17.62079 -16.64156 -15.79833 -15.21167 -14.80316 -14.59883 -13.78760 -13.66173 -13.40366 -12.82340 -12.40380 -11.92159 -11.71547 -11.65863 -11.19774 -11.06701 -10.90153 -10.69961 -10.48856 -10.17192 -9.93187 -9.90808 -9.77215 -8.53870 -8.20823 -7.94396 -6.65928 -5.83716 -3.36260 1.85101 1.95286 3.31985 3.41862 3.45833 4.21759 4.46078 4.62462 5.26771 5.44409 5.48416 5.61785 5.86613 6.00355 6.07955 6.16554 6.31040 6.40982 6.43945 6.60016 6.66928 6.71327 6.92592 6.94133 7.04423 7.18711 7.37644 7.44696 7.65715 7.79649 8.02860 8.46055 9.13497 9.77333 10.33691 11.16203 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028425 B = 0.010513 C = 0.008760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.794873 B = 2662.830113 C = 3195.444039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.143 3.857 3 N -0.576 5.576 4 C -0.249 4.249 5 H 0.062 0.938 6 C 0.008 3.992 7 N -0.886 5.886 8 Si 0.891 3.109 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.289 1.289 12 C 0.168 3.832 13 C -0.053 4.053 14 C -0.107 4.107 15 C -0.112 4.112 16 C -0.168 4.168 17 C 0.088 3.912 18 O -0.504 6.504 19 C -0.143 4.143 20 H 0.035 0.965 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.034 0.966 25 H 0.255 0.745 26 H 0.111 0.889 27 H 0.034 0.966 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.380 0.620 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 0.609 7.411 9.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.016 3.984 3 N -0.295 5.295 4 C -0.378 4.378 5 H 0.079 0.921 6 C -0.191 4.191 7 N -0.529 5.529 8 Si 0.721 3.279 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.216 1.216 12 C 0.041 3.959 13 C -0.056 4.056 14 C -0.126 4.126 15 C -0.130 4.130 16 C -0.187 4.187 17 C 0.044 3.956 18 O -0.314 6.314 19 C -0.162 4.162 20 H 0.054 0.946 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.128 0.872 27 H 0.052 0.948 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.234 0.766 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.300 0.503 6.838 9.311 hybrid contribution -0.069 0.928 -0.215 0.955 sum -6.369 1.431 6.623 9.299 Atomic orbital electron populations 1.22391 0.99862 0.99010 1.01756 1.20860 0.91858 0.86834 0.98798 1.43763 1.75531 1.08158 1.02043 1.19080 1.07344 1.18489 0.92923 0.92070 1.25049 0.94194 1.01488 0.98408 1.69981 1.04617 1.35856 1.42401 0.86399 0.77824 0.82487 0.81236 1.20040 1.21281 1.21607 1.20173 0.92757 0.97067 0.85856 1.21211 0.98806 0.93475 0.92116 1.21161 0.97344 0.95110 0.98978 1.20981 0.95045 0.99427 0.97587 1.21130 1.00764 0.94087 1.02692 1.18464 0.90877 0.90690 0.95559 1.84825 1.52934 1.73898 1.19696 1.21276 0.94411 0.99936 1.00608 0.94625 0.93077 0.93357 0.93686 0.94710 0.93487 0.87198 0.94797 0.85996 0.86655 0.86733 0.76585 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 10.20 37.16 0.38 -2.96 16 2 C 0.14 3.06 6.44 -4.05 -0.03 3.03 16 3 N -0.58 -14.16 2.44 -174.61 -0.43 -14.59 16 4 C -0.25 -6.68 9.48 -15.06 -0.14 -6.82 16 5 H 0.06 1.68 7.93 -52.49 -0.42 1.26 16 6 C 0.01 0.22 4.95 -17.43 -0.09 0.14 16 7 N -0.89 -24.60 11.31 55.49 0.63 -23.97 16 8 Si 0.89 21.12 29.61 -169.99 -5.03 16.09 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 C 0.17 3.87 5.46 -5.19 -0.03 3.84 16 13 C -0.05 -1.09 5.44 -104.64 -0.57 -1.66 16 14 C -0.11 -2.16 9.70 -39.56 -0.38 -2.54 16 15 C -0.11 -1.95 10.04 -39.60 -0.40 -2.34 16 16 C -0.17 -2.77 9.99 -39.43 -0.39 -3.16 16 17 C 0.09 1.51 6.71 -39.22 -0.26 1.25 16 18 O -0.50 -7.50 13.50 -19.45 -0.26 -7.76 16 19 C -0.14 -2.66 7.81 -39.43 -0.31 -2.97 16 20 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 1.02 6.13 -51.93 -0.32 0.71 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.04 0.98 8.09 -51.93 -0.42 0.56 16 24 H 0.03 0.69 7.83 -51.93 -0.41 0.28 16 25 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.11 2.84 5.26 -51.93 -0.27 2.56 16 27 H 0.03 0.74 7.80 -51.93 -0.40 0.34 16 28 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 29 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.38 3.63 9.06 45.56 0.41 4.04 16 32 H 0.12 2.08 8.02 -52.49 -0.42 1.66 16 LS Contribution 273.29 15.07 4.12 4.12 Total: -1.00 -29.28 273.29 -6.69 -35.97 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -3.50 Total: 4.35 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -2.22 Total: -14.21 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.20 Total: -38.55 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.26 Total: -7.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.28 -6.69 -35.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087178039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.902 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds