Wall clock time and date at job start Sun Mar 29 2020 22:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47440 * 2 1 4 4 C 1.36934 * 119.99981 * 275.65412 * 3 2 1 5 5 H 1.08000 * 120.00099 * 33.99109 * 4 3 2 6 6 C 1.38810 * 120.00380 * 213.98587 * 4 3 2 7 7 N 1.31623 * 119.99942 * 22.95968 * 6 4 3 8 8 Si 1.86801 * 120.00320 * 202.96354 * 6 4 3 9 9 H 1.48496 * 109.47066 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47222 * 119.99685 * 8 6 4 11 11 H 1.48498 * 109.47148 * 239.99832 * 8 6 4 12 12 C 1.46498 * 120.00260 * 95.65845 * 3 2 1 13 13 C 1.50700 * 109.46986 * 270.00361 * 12 3 2 14 14 C 1.38295 * 119.96830 * 270.01553 * 13 12 3 15 15 C 1.38244 * 120.11101 * 180.02562 * 14 13 12 16 16 C 1.38177 * 120.05514 * 359.68375 * 15 14 13 17 17 C 1.38709 * 119.93908 * 0.57254 * 16 15 14 18 18 O 1.35908 * 120.05335 * 179.72205 * 17 16 15 19 19 C 1.38119 * 119.97591 * 89.99870 * 13 12 3 20 20 H 1.08995 * 109.47345 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46824 * 300.00124 * 1 2 3 22 22 H 1.08998 * 109.46810 * 59.99879 * 1 2 3 23 23 H 1.09004 * 109.47120 * 239.99699 * 2 1 3 24 24 H 1.09001 * 109.47197 * 120.00466 * 2 1 3 25 25 H 0.96994 * 120.00139 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.47717 * 149.99863 * 12 3 2 27 27 H 1.09003 * 109.46947 * 29.99595 * 12 3 2 28 28 H 1.07998 * 119.94371 * 0.02562 * 14 13 12 29 29 H 1.08003 * 119.97391 * 179.97438 * 15 14 13 30 30 H 1.07999 * 120.02913 * 180.29674 * 16 15 14 31 31 H 0.96698 * 113.99966 * 269.72725 * 18 17 16 32 32 H 1.07996 * 120.02611 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1365 2.0656 -1.1801 5 1 1.4326 1.8885 -1.9798 6 6 3.1609 2.9871 -1.3486 7 7 4.2518 2.8993 -0.6175 8 14 2.9911 4.3518 -2.6128 9 1 1.6793 4.2312 -3.2982 10 1 3.0744 5.6695 -1.9330 11 1 4.0842 4.2401 -3.6116 12 6 2.3805 2.0301 1.2625 13 6 1.1717 2.7239 1.8355 14 6 0.9075 4.0397 1.5018 15 6 -0.2003 4.6792 2.0261 16 6 -1.0502 4.0027 2.8802 17 6 -0.7844 2.6845 3.2206 18 8 -1.6157 2.0187 4.0649 19 6 0.3283 2.0450 2.6932 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 4.9678 3.5429 -0.7354 26 1 3.1680 2.7618 1.0822 27 1 2.7368 1.2792 1.9678 28 1 1.5677 4.5685 0.8304 29 1 -0.4043 5.7069 1.7643 30 1 -1.9182 4.5012 3.2858 31 1 -1.3740 2.0973 4.9979 32 1 0.5352 1.0176 2.9536 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087178039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:10 Heat of formation + Delta-G solvation = -21.069537 kcal Electronic energy + Delta-G solvation = -15221.533517 eV Core-core repulsion = 12760.985103 eV Total energy + Delta-G solvation = -2460.548415 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.58932 -38.25699 -36.96492 -33.86995 -32.63560 -30.88967 -30.08643 -27.44079 -25.29933 -23.35379 -22.67646 -21.84752 -19.03694 -18.45946 -17.20664 -16.93087 -16.38985 -16.04861 -15.56313 -15.45156 -14.87611 -14.33964 -14.12383 -13.46942 -13.29164 -13.21536 -12.96500 -12.78170 -12.53356 -12.35361 -12.29291 -11.99282 -11.75043 -11.56157 -11.26675 -10.54022 -9.62861 -9.38519 -8.62220 -7.84305 -5.41782 0.45575 0.53833 1.42178 1.46719 1.56295 2.49496 2.83307 3.21775 3.38923 3.84874 4.08342 4.16224 4.35395 4.40874 4.53947 4.71590 4.75985 4.80773 4.86405 5.05045 5.13747 5.21019 5.25652 5.53037 5.54794 5.55787 5.64489 5.74279 5.98494 6.06343 6.45898 6.94602 7.14437 7.84328 8.35871 9.12104 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028425 B = 0.010513 C = 0.008760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.794873 B = 2662.830113 C = 3195.444039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.138 3.862 3 N -0.592 5.592 4 C -0.258 4.258 5 H 0.050 0.950 6 C -0.031 4.031 7 N -0.913 5.913 8 Si 0.946 3.054 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.290 1.290 12 C 0.173 3.827 13 C -0.068 4.068 14 C -0.132 4.132 15 C -0.106 4.106 16 C -0.161 4.161 17 C 0.099 3.901 18 O -0.507 6.507 19 C -0.149 4.149 20 H 0.066 0.934 21 H 0.046 0.954 22 H 0.030 0.970 23 H 0.035 0.965 24 H 0.049 0.951 25 H 0.253 0.747 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.097 0.903 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.407 0.593 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.223 0.889 8.489 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.388 4.388 5 H 0.068 0.932 6 C -0.228 4.228 7 N -0.557 5.557 8 Si 0.775 3.225 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.217 1.217 12 C 0.047 3.953 13 C -0.071 4.071 14 C -0.151 4.151 15 C -0.124 4.124 16 C -0.179 4.179 17 C 0.055 3.945 18 O -0.320 6.320 19 C -0.168 4.168 20 H 0.085 0.915 21 H 0.065 0.935 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.116 0.884 29 H 0.160 0.840 30 H 0.165 0.835 31 H 0.265 0.735 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.342 0.774 7.952 11.551 hybrid contribution 0.491 0.786 -0.431 1.022 sum -7.851 1.560 7.521 10.983 Atomic orbital electron populations 1.22208 0.98046 1.00630 1.00594 1.20976 0.93203 0.85525 0.99026 1.43953 1.75960 1.09367 1.01896 1.19156 1.06914 1.19100 0.93644 0.93246 1.25611 0.93933 1.03071 1.00216 1.70086 1.05182 1.36495 1.43939 0.85545 0.77537 0.80212 0.79243 1.19803 1.20974 1.21690 1.19967 0.93329 0.96469 0.85567 1.20884 0.98474 0.93961 0.93754 1.21093 0.98684 0.95285 1.00049 1.21223 0.93780 1.00621 0.96794 1.21477 1.01146 0.93806 1.01517 1.18477 0.89984 0.90796 0.95274 1.84758 1.52192 1.73564 1.21446 1.21275 0.94878 1.00190 1.00463 0.91544 0.93502 0.95095 0.94622 0.93247 0.93731 0.90228 0.94491 0.88445 0.83971 0.83483 0.73465 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.88 10.20 71.98 0.73 -5.15 16 2 C 0.14 5.89 6.44 86.38 0.56 6.45 16 3 N -0.59 -29.59 2.44 -706.35 -1.73 -31.31 16 4 C -0.26 -14.16 9.48 84.03 0.80 -13.36 16 5 H 0.05 2.78 7.93 -2.91 -0.02 2.75 16 6 C -0.03 -1.70 4.95 84.86 0.42 -1.28 16 7 N -0.91 -52.18 11.31 21.65 0.24 -51.94 16 8 Si 0.95 44.25 29.61 68.60 2.03 46.28 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 12 C 0.17 8.17 5.46 85.63 0.47 8.64 16 13 C -0.07 -2.81 5.44 -19.88 -0.11 -2.92 16 14 C -0.13 -5.33 9.70 22.28 0.22 -5.11 16 15 C -0.11 -3.44 10.04 22.26 0.22 -3.22 16 16 C -0.16 -4.71 9.99 22.37 0.22 -4.49 16 17 C 0.10 3.08 6.71 22.51 0.15 3.23 16 18 O -0.51 -12.98 13.50 -92.51 -1.25 -14.23 16 19 C -0.15 -5.30 7.81 22.37 0.17 -5.13 16 20 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 21 H 0.05 1.80 6.13 -2.39 -0.01 1.78 16 22 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.04 1.56 8.09 -2.38 -0.02 1.54 16 24 H 0.05 1.93 7.83 -2.39 -0.02 1.91 16 25 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 26 H 0.08 4.29 5.26 -2.39 -0.01 4.28 16 27 H 0.04 1.65 7.80 -2.39 -0.02 1.63 16 28 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 30 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 31 H 0.41 5.96 9.06 -74.06 -0.67 5.29 16 32 H 0.12 4.13 8.02 -2.91 -0.02 4.11 16 Total: -1.00 -62.91 273.29 3.60 -59.31 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.44 Total: 14.23 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 3.86 Total: -22.34 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -1.48 Total: -83.25 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -1.25 Total: -14.23 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -62.91 3.60 -59.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087178039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.244 kcal (2) G-P(sol) polarization free energy of solvation -62.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds