Wall clock time and date at job start Sun Mar 29 2020 22:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 117.00099 * 2 1 4 4 C 1.38751 * 120.05707 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94612 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05722 * 359.75060 * 5 4 3 7 7 C 1.38250 * 120.10711 * 0.50556 * 6 5 4 8 8 C 1.50698 * 119.96815 * 179.76789 * 7 6 5 9 9 H 1.09001 * 109.46665 * 159.72555 * 8 7 6 10 10 C 1.53006 * 109.47184 * 279.72166 * 8 7 6 11 11 N 1.46492 * 109.47354 * 39.72641 * 8 7 6 12 12 C 1.36940 * 120.00114 * 154.99906 * 11 8 7 13 13 H 1.07993 * 119.99751 * 359.97438 * 12 11 8 14 14 C 1.38813 * 120.00020 * 179.97438 * 12 11 8 15 15 N 1.31623 * 120.00145 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99789 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46987 * 90.00577 * 16 14 12 18 18 H 1.48502 * 109.47063 * 210.00262 * 16 14 12 19 19 H 1.48499 * 109.47321 * 330.00080 * 16 14 12 20 20 C 1.38159 * 120.05335 * 359.49468 * 7 6 5 21 21 H 1.08997 * 109.47073 * 300.00405 * 1 2 3 22 22 H 1.09005 * 109.47011 * 59.99834 * 1 2 3 23 23 H 1.08993 * 109.47293 * 180.02562 * 1 2 3 24 24 H 1.07997 * 120.02744 * 0.02562 * 4 3 2 25 25 H 1.08001 * 119.97446 * 180.02562 * 5 4 3 26 26 H 1.08001 * 119.94949 * 180.27312 * 6 5 4 27 27 H 1.09001 * 109.46998 * 60.00038 * 10 8 7 28 28 H 1.09000 * 109.47050 * 180.02562 * 10 8 7 29 29 H 1.09001 * 109.46801 * 300.00442 * 10 8 7 30 30 H 0.97005 * 120.00153 * 334.99428 * 11 8 7 31 31 H 0.96993 * 119.99993 * 179.97438 * 15 14 12 32 32 H 1.08002 * 120.02630 * 180.27685 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6758 0.0063 7 6 4.0560 2.5170 0.0004 8 6 5.5608 2.5981 0.0008 9 1 5.9754 1.6533 0.3522 10 6 6.0570 2.8760 -1.4196 11 7 5.9913 3.6806 0.8890 12 6 7.2364 3.6453 1.4579 13 1 7.9009 2.8192 1.2521 14 6 7.6445 4.6713 2.2991 15 7 6.8345 5.6779 2.5504 16 14 9.3427 4.6227 3.0757 17 1 10.3150 5.3031 2.1828 18 1 9.3068 5.3163 4.3883 19 1 9.7565 3.2103 3.2734 20 6 3.4311 1.2848 -0.0001 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 0.2129 2.3204 0.0014 25 1 1.3341 4.5114 0.0019 26 1 3.7923 4.6380 0.0112 27 1 5.6423 3.8209 -1.7710 28 1 7.1455 2.9343 -1.4194 29 1 5.7367 2.0705 -2.0804 30 1 5.3944 4.4225 1.0742 31 1 7.1196 6.3946 3.1385 32 1 4.0206 0.3799 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088162477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:44 Heat of formation + Delta-G solvation = -4.688199 kcal Electronic energy + Delta-G solvation = -14591.585918 eV Core-core repulsion = 12131.747851 eV Total energy + Delta-G solvation = -2459.838067 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.89662 -37.68063 -34.99988 -32.21905 -30.51246 -29.26581 -28.04354 -27.14694 -24.09703 -22.40867 -22.13411 -19.81098 -17.68020 -16.99316 -16.00375 -15.63380 -15.51641 -14.66437 -14.18263 -13.73971 -13.23293 -13.03860 -12.83624 -12.49181 -12.11441 -11.96477 -11.58603 -11.21421 -10.89487 -10.84551 -10.74733 -10.66456 -10.22352 -9.93826 -9.65408 -8.94912 -8.42362 -7.86716 -6.96112 -5.75334 -3.03883 1.69265 1.81932 3.39532 3.45370 3.50514 3.52139 4.14035 4.61642 4.96073 5.11175 5.12090 5.20787 5.39759 5.50350 5.58869 5.68922 5.75312 5.84177 5.96635 6.19760 6.34305 6.39220 6.55905 6.59325 6.72674 6.83484 6.98254 7.10175 7.25104 7.63228 7.72128 8.43210 9.54528 10.10552 10.46206 11.47518 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045757 B = 0.006145 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.781731 B = 4555.742311 C = 4642.497466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.118 3.882 4 C -0.221 4.221 5 C -0.083 4.083 6 C -0.139 4.139 7 C -0.028 4.028 8 C 0.205 3.795 9 H 0.057 0.943 10 C -0.159 4.159 11 N -0.721 5.721 12 C -0.238 4.238 13 H 0.072 0.928 14 C -0.013 4.013 15 N -0.933 5.933 16 Si 0.907 3.093 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.282 1.282 20 C -0.149 4.149 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.095 0.905 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.128 0.872 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.385 0.615 31 H 0.255 0.745 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.815 -7.776 -6.510 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.074 3.926 4 C -0.240 4.240 5 C -0.101 4.101 6 C -0.157 4.157 7 C -0.029 4.029 8 C 0.096 3.904 9 H 0.075 0.925 10 C -0.219 4.219 11 N -0.363 5.363 12 C -0.369 4.369 13 H 0.090 0.910 14 C -0.209 4.209 15 N -0.581 5.581 16 Si 0.739 3.261 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.207 1.207 20 C -0.168 4.168 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.113 0.887 24 H 0.138 0.862 25 H 0.138 0.862 26 H 0.146 0.854 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.221 0.779 31 H 0.065 0.935 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.552 -8.003 -6.421 15.451 hybrid contribution 0.403 0.493 0.567 0.852 sum -11.149 -7.510 -5.853 14.662 Atomic orbital electron populations 1.22968 0.79067 1.03353 1.01148 1.86041 1.20848 1.27444 1.89222 1.18945 0.92255 0.83781 0.97642 1.21072 0.99331 0.92564 1.11032 1.20893 0.94701 0.96652 0.97878 1.21013 0.93273 0.99021 1.02408 1.20249 0.97167 0.91781 0.93693 1.19227 0.86596 0.93618 0.90998 0.92472 1.22412 1.01660 1.00188 0.97654 1.42526 1.16585 1.23182 1.54056 1.19260 0.91478 1.04942 1.21259 0.91031 1.24735 0.98352 0.97231 1.00580 1.69662 1.35793 1.11585 1.41110 0.86181 0.84042 0.77332 0.78590 1.21721 1.21806 1.20731 1.20265 0.90965 0.98292 1.07322 0.92889 0.92955 0.88696 0.86208 0.86181 0.85370 0.93259 0.92341 0.94248 0.77926 0.93502 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.60 10.50 -19.42 -0.20 -4.80 16 3 C 0.12 1.88 6.69 -39.22 -0.26 1.62 16 4 C -0.22 -3.22 9.04 -39.44 -0.36 -3.58 16 5 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 6 C -0.14 -2.51 9.06 -39.56 -0.36 -2.87 16 7 C -0.03 -0.52 4.95 -104.65 -0.52 -1.04 16 8 C 0.21 4.27 3.09 -69.08 -0.21 4.06 16 9 H 0.06 1.20 7.94 -51.93 -0.41 0.78 16 10 C -0.16 -2.97 9.47 37.16 0.35 -2.62 16 11 N -0.72 -18.35 5.07 -54.55 -0.28 -18.63 16 12 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 13 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 14 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 15 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 16 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 20 C -0.15 -2.58 9.61 -39.44 -0.38 -2.96 16 21 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 22 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 23 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.12 1.39 6.30 -52.49 -0.33 1.06 16 25 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 26 H 0.13 2.43 6.89 -52.49 -0.36 2.07 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.39 10.30 6.05 -40.82 -0.25 10.05 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.13 2.04 8.04 -52.49 -0.42 1.62 16 LS Contribution 273.99 15.07 4.13 4.13 Total: -1.00 -31.08 273.99 -6.27 -37.35 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.23 Total: 7.14 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -1.39 Total: -15.08 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.45 Total: -46.20 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.20 Total: -4.80 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.08 -6.27 -37.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088162477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.662 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds