Wall clock time and date at job start Sun Mar 29 2020 22:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 117.00099 * 2 1 4 4 C 1.38751 * 120.05707 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94612 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05722 * 359.75060 * 5 4 3 7 7 C 1.38250 * 120.10711 * 0.50556 * 6 5 4 8 8 C 1.50698 * 119.96815 * 179.76789 * 7 6 5 9 9 H 1.09001 * 109.46665 * 159.72555 * 8 7 6 10 10 C 1.53006 * 109.47184 * 279.72166 * 8 7 6 11 11 N 1.46492 * 109.47354 * 39.72641 * 8 7 6 12 12 C 1.36940 * 120.00114 * 154.99906 * 11 8 7 13 13 H 1.07993 * 119.99751 * 359.97438 * 12 11 8 14 14 C 1.38813 * 120.00020 * 179.97438 * 12 11 8 15 15 N 1.31623 * 120.00145 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99789 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46987 * 90.00577 * 16 14 12 18 18 H 1.48502 * 109.47063 * 210.00262 * 16 14 12 19 19 H 1.48499 * 109.47321 * 330.00080 * 16 14 12 20 20 C 1.38159 * 120.05335 * 359.49468 * 7 6 5 21 21 H 1.08997 * 109.47073 * 300.00405 * 1 2 3 22 22 H 1.09005 * 109.47011 * 59.99834 * 1 2 3 23 23 H 1.08993 * 109.47293 * 180.02562 * 1 2 3 24 24 H 1.07997 * 120.02744 * 0.02562 * 4 3 2 25 25 H 1.08001 * 119.97446 * 180.02562 * 5 4 3 26 26 H 1.08001 * 119.94949 * 180.27312 * 6 5 4 27 27 H 1.09001 * 109.46998 * 60.00038 * 10 8 7 28 28 H 1.09000 * 109.47050 * 180.02562 * 10 8 7 29 29 H 1.09001 * 109.46801 * 300.00442 * 10 8 7 30 30 H 0.97005 * 120.00153 * 334.99428 * 11 8 7 31 31 H 0.96993 * 119.99993 * 179.97438 * 15 14 12 32 32 H 1.08002 * 120.02630 * 180.27685 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6758 0.0063 7 6 4.0560 2.5170 0.0004 8 6 5.5608 2.5981 0.0008 9 1 5.9754 1.6533 0.3522 10 6 6.0570 2.8760 -1.4196 11 7 5.9913 3.6806 0.8890 12 6 7.2364 3.6453 1.4579 13 1 7.9009 2.8192 1.2521 14 6 7.6445 4.6713 2.2991 15 7 6.8345 5.6779 2.5504 16 14 9.3427 4.6227 3.0757 17 1 10.3150 5.3031 2.1828 18 1 9.3068 5.3163 4.3883 19 1 9.7565 3.2103 3.2734 20 6 3.4311 1.2848 -0.0001 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 0.2129 2.3204 0.0014 25 1 1.3341 4.5114 0.0019 26 1 3.7923 4.6380 0.0112 27 1 5.6423 3.8209 -1.7710 28 1 7.1455 2.9343 -1.4194 29 1 5.7367 2.0705 -2.0804 30 1 5.3944 4.4225 1.0742 31 1 7.1196 6.3946 3.1385 32 1 4.0206 0.3799 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088162477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:43 Heat of formation + Delta-G solvation = -24.195817 kcal Electronic energy + Delta-G solvation = -14592.431831 eV Core-core repulsion = 12131.747851 eV Total energy + Delta-G solvation = -2460.683981 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.08509 -38.96609 -36.66523 -34.11316 -31.87895 -30.81441 -29.63156 -28.04786 -26.04879 -23.89163 -23.45872 -21.22398 -19.44806 -18.50337 -17.20089 -16.88357 -16.59197 -16.43388 -15.80562 -15.36057 -14.71105 -14.48000 -14.18254 -14.03950 -13.47229 -13.19143 -13.03547 -12.77994 -12.72753 -12.45581 -12.19502 -12.04421 -11.87021 -11.65645 -11.46552 -11.00245 -9.74830 -9.10603 -9.02705 -7.93270 -5.22055 0.41278 0.53828 1.48313 1.50164 1.58467 2.38964 2.57894 2.85399 3.40992 3.86082 3.92788 4.01135 4.22619 4.31548 4.41981 4.44370 4.48556 4.61986 4.71379 4.76979 4.80313 5.03567 5.05266 5.19096 5.34716 5.42882 5.51101 5.56430 5.79348 5.86672 6.28909 6.51409 7.35113 8.08647 8.34301 9.30557 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045757 B = 0.006145 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.781731 B = 4555.742311 C = 4642.497466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.120 3.880 4 C -0.212 4.212 5 C -0.079 4.079 6 C -0.161 4.161 7 C -0.045 4.045 8 C 0.201 3.799 9 H 0.052 0.948 10 C -0.148 4.148 11 N -0.734 5.734 12 C -0.241 4.241 13 H 0.077 0.923 14 C -0.075 4.075 15 N -0.971 5.971 16 Si 0.974 3.026 17 H -0.286 1.286 18 H -0.296 1.296 19 H -0.270 1.270 20 C -0.164 4.164 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.120 0.880 24 H 0.156 0.844 25 H 0.148 0.852 26 H 0.109 0.891 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.376 0.624 31 H 0.251 0.749 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.216 -9.006 -6.975 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.075 3.925 4 C -0.230 4.230 5 C -0.097 4.097 6 C -0.180 4.180 7 C -0.046 4.046 8 C 0.093 3.907 9 H 0.070 0.930 10 C -0.207 4.207 11 N -0.375 5.375 12 C -0.373 4.373 13 H 0.095 0.905 14 C -0.267 4.267 15 N -0.621 5.621 16 Si 0.803 3.197 17 H -0.213 1.213 18 H -0.223 1.223 19 H -0.195 1.195 20 C -0.183 4.183 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.138 0.862 24 H 0.174 0.826 25 H 0.165 0.835 26 H 0.127 0.873 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.209 0.791 31 H 0.060 0.940 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.966 -9.283 -6.921 17.384 hybrid contribution 0.675 0.758 0.649 1.205 sum -12.291 -8.525 -6.273 16.220 Atomic orbital electron populations 1.23352 0.76410 1.05563 1.02307 1.86033 1.23559 1.26589 1.88816 1.19017 0.91936 0.84977 0.96611 1.21442 1.01103 0.91483 1.09004 1.21184 0.93635 0.98382 0.96493 1.20980 0.94743 0.97948 1.04300 1.20018 0.95813 0.92861 0.95874 1.19372 0.88505 0.91823 0.91038 0.92960 1.22241 1.00677 1.01015 0.96806 1.42704 1.15836 1.24181 1.54802 1.19654 0.92447 1.04660 1.20489 0.90511 1.25546 1.02107 0.97226 1.01829 1.69822 1.37658 1.12386 1.42264 0.85136 0.79710 0.77685 0.77207 1.21329 1.22281 1.19461 1.20319 0.92222 0.97734 1.08006 0.91926 0.91438 0.86216 0.82621 0.83462 0.87334 0.93755 0.93510 0.91381 0.79087 0.94033 0.85156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.70 10.50 -92.41 -0.97 -9.67 16 3 C 0.12 3.55 6.69 22.51 0.15 3.70 16 4 C -0.21 -5.52 9.04 22.36 0.20 -5.32 16 5 C -0.08 -2.29 10.04 22.25 0.22 -2.07 16 6 C -0.16 -5.85 9.06 22.28 0.20 -5.65 16 7 C -0.04 -1.69 4.95 -19.88 -0.10 -1.79 16 8 C 0.20 8.48 3.09 44.25 0.14 8.62 16 9 H 0.05 2.22 7.94 -2.39 -0.02 2.21 16 10 C -0.15 -5.52 9.47 71.98 0.68 -4.84 16 11 N -0.73 -38.32 5.07 -326.51 -1.66 -39.98 16 12 C -0.24 -13.65 9.93 84.03 0.83 -12.82 16 13 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 14 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 15 N -0.97 -60.27 13.06 21.65 0.28 -59.99 16 16 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 17 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 18 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 C -0.16 -5.54 9.61 22.36 0.21 -5.33 16 21 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 22 H 0.07 0.85 7.66 -2.38 -0.02 0.83 16 23 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.16 2.89 6.30 -2.91 -0.02 2.87 16 25 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 26 H 0.11 4.31 6.89 -2.91 -0.02 4.29 16 27 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 30 H 0.38 20.85 6.05 -92.70 -0.56 20.29 16 31 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.13 4.15 8.04 -2.91 -0.02 4.13 16 Total: -1.00 -67.10 273.99 4.36 -62.74 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.55 Total: 26.12 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 4.13 Total: -28.02 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -1.37 Total: -99.97 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.97 Total: -9.67 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -67.10 4.36 -62.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088162477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.548 kcal (2) G-P(sol) polarization free energy of solvation -67.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds