Wall clock time and date at job start Sun Mar 29 2020 21:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00227 * 2 1 4 4 H 1.48492 * 109.47247 * 270.00147 * 3 2 1 5 5 H 1.48500 * 109.46965 * 30.00028 * 3 2 1 6 6 H 1.48499 * 109.47410 * 149.99651 * 3 2 1 7 7 C 1.37878 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00536 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99966 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47366 * 174.19962 * 9 7 2 11 11 C 1.46897 * 111.00151 * 159.83980 * 10 9 7 12 12 C 1.50702 * 109.47242 * 189.99695 * 11 10 9 13 13 C 1.41383 * 126.57927 * 270.02502 * 12 11 10 14 14 C 1.34516 * 106.83697 * 179.97438 * 13 12 11 15 15 O 1.34296 * 108.42473 * 359.97438 * 14 13 12 16 16 C 1.34315 * 109.47633 * 0.02562 * 15 14 13 17 17 C 1.46908 * 110.99546 * 283.79494 * 10 9 7 18 18 C 1.52992 * 117.49614 * 138.01965 * 17 10 9 19 19 C 1.52992 * 117.49809 * 69.39795 * 17 10 9 20 20 H 0.97000 * 119.99945 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47314 * 54.19563 * 9 7 2 22 22 H 1.08999 * 109.47296 * 294.19592 * 9 7 2 23 23 H 1.09010 * 109.47069 * 70.00022 * 11 10 9 24 24 H 1.08995 * 109.47474 * 310.00012 * 11 10 9 25 25 H 1.07999 * 126.57842 * 359.93013 * 13 12 11 26 26 H 1.08007 * 125.78475 * 179.97438 * 14 13 12 27 27 H 1.07995 * 125.78787 * 180.02562 * 16 15 14 28 28 H 1.09004 * 115.54822 * 283.72500 * 17 10 9 29 29 H 1.09004 * 117.50256 * 359.97438 * 18 17 10 30 30 H 1.09004 * 117.49665 * 145.01806 * 18 17 10 31 31 H 1.09008 * 117.49771 * 214.97572 * 19 17 10 32 32 H 1.09002 * 117.50438 * 359.97361 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.1995 -3.6122 -0.1411 11 6 1.6043 -4.8727 0.3223 12 6 2.6709 -5.9349 0.3953 13 6 3.0498 -6.8209 -0.6392 14 6 4.0333 -7.5960 -0.1477 15 8 4.2690 -7.2281 1.1222 16 6 3.4455 -6.2212 1.4570 17 6 2.6703 -3.7306 -1.5277 18 6 4.1580 -4.0124 -1.7468 19 6 3.5877 -2.6274 -2.0588 20 1 -0.4850 0.8401 -0.0004 21 1 0.5484 -2.5131 -0.8337 22 1 0.7050 -2.6035 0.9370 23 1 0.8271 -5.1856 -0.3752 24 1 1.1683 -4.7270 1.3105 25 1 2.6298 -6.8671 -1.6331 26 1 4.5463 -8.3810 -0.6835 27 1 3.4117 -5.7252 2.4158 28 1 1.9644 -4.1785 -2.2272 29 1 4.7875 -4.1096 -0.8623 30 1 4.4312 -4.6460 -2.5907 31 1 3.4857 -2.3498 -3.1080 32 1 3.8416 -1.8135 -1.3797 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124045077.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:23 Heat of formation + Delta-G solvation = 51.600121 kcal Electronic energy + Delta-G solvation = -15000.348173 eV Core-core repulsion = 12542.950951 eV Total energy + Delta-G solvation = -2457.397222 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.19391 -37.63414 -34.01226 -33.04651 -31.76487 -29.40786 -27.17959 -24.53006 -22.22513 -21.54653 -21.15742 -20.26430 -19.24895 -17.22381 -16.28641 -15.63191 -14.92946 -14.60405 -14.45856 -14.29127 -13.46253 -12.82547 -12.58540 -12.49082 -11.96712 -11.77837 -11.19830 -11.07327 -10.75253 -10.73407 -10.60335 -9.99202 -9.56351 -9.31928 -9.11593 -9.06361 -8.37684 -8.19112 -7.25105 -5.98971 -3.98738 2.09641 2.96070 3.33180 3.39573 3.43491 3.44965 4.45071 4.69173 4.94348 5.11846 5.24973 5.36082 5.49462 5.73803 5.79992 5.85386 6.03328 6.15672 6.22979 6.28542 6.38521 6.43960 6.55142 6.78957 6.83532 7.08109 7.22701 7.41043 7.45658 7.88637 8.14259 8.24899 8.57719 9.07796 9.63927 11.11642 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043301 B = 0.007320 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.474916 B = 3824.071298 C = 4015.439237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.496 4.496 8 H 0.067 0.933 9 C 0.194 3.806 10 N -0.506 5.506 11 C 0.122 3.878 12 C -0.153 4.153 13 C -0.194 4.194 14 C -0.060 4.060 15 O -0.185 6.185 16 C -0.036 4.036 17 C 0.033 3.967 18 C -0.175 4.175 19 C -0.160 4.160 20 H 0.260 0.740 21 H -0.002 1.002 22 H 0.024 0.976 23 H 0.031 0.969 24 H 0.076 0.924 25 H 0.139 0.861 26 H 0.194 0.806 27 H 0.199 0.801 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 -11.907 -1.228 13.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.722 3.278 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.535 4.535 8 H 0.085 0.915 9 C 0.070 3.930 10 N -0.231 5.231 11 C -0.006 4.006 12 C -0.155 4.155 13 C -0.213 4.213 14 C -0.127 4.127 15 O -0.081 6.081 16 C -0.104 4.104 17 C -0.077 4.077 18 C -0.213 4.213 19 C -0.197 4.197 20 H 0.070 0.930 21 H 0.016 0.984 22 H 0.042 0.958 23 H 0.049 0.951 24 H 0.094 0.906 25 H 0.157 0.843 26 H 0.211 0.789 27 H 0.216 0.784 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.401 -11.792 -0.732 13.437 hybrid contribution -0.534 0.875 -0.792 1.295 sum 5.867 -10.917 -1.523 12.487 Atomic orbital electron populations 1.69955 1.06027 1.26622 1.51527 1.24978 0.94825 0.99165 0.95759 0.86562 0.79839 0.83396 0.78038 1.20755 1.21356 1.19809 1.21218 0.93514 0.89627 1.49106 0.91475 1.19738 0.89866 0.87396 0.96036 1.61956 1.40617 1.02751 1.17754 1.20368 0.91784 0.88142 1.00282 1.20445 1.01780 0.99609 0.93620 1.21661 1.00572 0.98574 1.00522 1.23800 1.01835 1.03364 0.83689 1.84020 1.51760 1.43713 1.28597 1.23821 0.93411 0.91987 1.01134 1.21957 0.91463 1.03613 0.90633 1.22899 0.96955 0.99650 1.01751 1.23123 1.02865 0.93052 1.00660 0.93040 0.98397 0.95761 0.95123 0.90567 0.84332 0.78909 0.78390 0.91744 0.89361 0.90626 0.90372 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -13.68 7.82 -34.44 -0.27 -13.95 16 8 H 0.07 1.84 5.79 -52.49 -0.30 1.53 16 9 C 0.19 5.01 4.77 -4.97 -0.02 4.99 16 10 N -0.51 -10.93 4.56 -229.52 -1.05 -11.98 16 11 C 0.12 2.25 5.46 -4.98 -0.03 2.23 16 12 C -0.15 -2.47 4.86 -104.74 -0.51 -2.98 16 13 C -0.19 -2.77 9.68 -39.70 -0.38 -3.16 16 14 C -0.06 -0.75 12.09 29.42 0.36 -0.40 16 15 O -0.18 -2.65 10.65 5.70 0.06 -2.59 16 16 C -0.04 -0.53 12.01 29.41 0.35 -0.18 16 17 C 0.03 0.65 4.15 -67.72 -0.28 0.37 16 18 C -0.17 -3.06 9.23 -26.74 -0.25 -3.31 16 19 C -0.16 -3.15 9.47 -26.74 -0.25 -3.41 16 20 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 21 H 0.00 -0.05 7.99 -51.93 -0.42 -0.47 16 22 H 0.02 0.66 7.73 -51.93 -0.40 0.26 16 23 H 0.03 0.56 8.12 -51.92 -0.42 0.14 16 24 H 0.08 1.37 7.82 -51.93 -0.41 0.96 16 25 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 26 H 0.19 1.66 8.06 -52.48 -0.42 1.24 16 27 H 0.20 2.52 8.06 -52.49 -0.42 2.10 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.41 8.14 -51.92 -0.42 0.99 16 32 H 0.12 2.56 5.45 -51.93 -0.28 2.28 16 LS Contribution 272.30 15.07 4.10 4.10 Total: -1.00 -30.06 272.30 -6.87 -36.94 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.33 Total: 1.29 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.38 Total: -18.38 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: -0.31 Total: -37.93 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: 0.06 Total: -2.59 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.06 -6.87 -36.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124045077.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.538 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds