Wall clock time and date at job start Sun Mar 29 2020 21:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00227 * 2 1 4 4 H 1.48492 * 109.47247 * 270.00147 * 3 2 1 5 5 H 1.48500 * 109.46965 * 30.00028 * 3 2 1 6 6 H 1.48499 * 109.47410 * 149.99651 * 3 2 1 7 7 C 1.37878 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00536 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99966 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47366 * 174.19962 * 9 7 2 11 11 C 1.46897 * 111.00151 * 159.83980 * 10 9 7 12 12 C 1.50702 * 109.47242 * 189.99695 * 11 10 9 13 13 C 1.41383 * 126.57927 * 270.02502 * 12 11 10 14 14 C 1.34516 * 106.83697 * 179.97438 * 13 12 11 15 15 O 1.34296 * 108.42473 * 359.97438 * 14 13 12 16 16 C 1.34315 * 109.47633 * 0.02562 * 15 14 13 17 17 C 1.46908 * 110.99546 * 283.79494 * 10 9 7 18 18 C 1.52992 * 117.49614 * 138.01965 * 17 10 9 19 19 C 1.52992 * 117.49809 * 69.39795 * 17 10 9 20 20 H 0.97000 * 119.99945 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47314 * 54.19563 * 9 7 2 22 22 H 1.08999 * 109.47296 * 294.19592 * 9 7 2 23 23 H 1.09010 * 109.47069 * 70.00022 * 11 10 9 24 24 H 1.08995 * 109.47474 * 310.00012 * 11 10 9 25 25 H 1.07999 * 126.57842 * 359.93013 * 13 12 11 26 26 H 1.08007 * 125.78475 * 179.97438 * 14 13 12 27 27 H 1.07995 * 125.78787 * 180.02562 * 16 15 14 28 28 H 1.09004 * 115.54822 * 283.72500 * 17 10 9 29 29 H 1.09004 * 117.50256 * 359.97438 * 18 17 10 30 30 H 1.09004 * 117.49665 * 145.01806 * 18 17 10 31 31 H 1.09008 * 117.49771 * 214.97572 * 19 17 10 32 32 H 1.09002 * 117.50438 * 359.97361 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.1995 -3.6122 -0.1411 11 6 1.6043 -4.8727 0.3223 12 6 2.6709 -5.9349 0.3953 13 6 3.0498 -6.8209 -0.6392 14 6 4.0333 -7.5960 -0.1477 15 8 4.2690 -7.2281 1.1222 16 6 3.4455 -6.2212 1.4570 17 6 2.6703 -3.7306 -1.5277 18 6 4.1580 -4.0124 -1.7468 19 6 3.5877 -2.6274 -2.0588 20 1 -0.4850 0.8401 -0.0004 21 1 0.5484 -2.5131 -0.8337 22 1 0.7050 -2.6035 0.9370 23 1 0.8271 -5.1856 -0.3752 24 1 1.1683 -4.7270 1.3105 25 1 2.6298 -6.8671 -1.6331 26 1 4.5463 -8.3810 -0.6835 27 1 3.4117 -5.7252 2.4158 28 1 1.9644 -4.1785 -2.2272 29 1 4.7875 -4.1096 -0.8623 30 1 4.4312 -4.6460 -2.5907 31 1 3.4857 -2.3498 -3.1080 32 1 3.8416 -1.8135 -1.3797 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124045077.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:22 Heat of formation + Delta-G solvation = 32.694157 kcal Electronic energy + Delta-G solvation = -15001.167997 eV Core-core repulsion = 12542.950951 eV Total energy + Delta-G solvation = -2458.217046 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.30101 -39.25872 -35.52234 -34.92697 -33.34479 -30.65160 -29.01865 -26.15439 -24.14748 -23.01957 -22.28413 -21.65152 -20.71326 -18.77290 -17.95003 -16.81132 -16.68057 -16.37797 -16.04116 -15.46091 -15.16255 -14.46191 -14.08870 -13.78900 -13.54797 -13.45617 -13.05207 -12.68693 -12.57186 -12.39863 -12.23891 -11.79698 -11.24042 -11.11352 -10.75788 -10.52947 -10.42144 -9.31439 -9.01434 -8.15043 -6.22707 1.01671 1.41904 1.42507 1.53689 1.79518 2.41841 2.43387 3.12220 3.17423 3.37388 3.99097 4.08940 4.20039 4.27097 4.34001 4.54297 4.63239 4.70807 4.84614 4.91031 4.96063 5.12829 5.18262 5.28823 5.37579 5.42081 5.49298 5.69044 5.77800 6.11356 6.34938 6.44235 6.65119 6.92231 7.45027 8.95545 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043301 B = 0.007320 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.474916 B = 3824.071298 C = 4015.439237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.068 0.932 9 C 0.209 3.791 10 N -0.510 5.510 11 C 0.125 3.875 12 C -0.174 4.174 13 C -0.212 4.212 14 C -0.040 4.040 15 O -0.188 6.188 16 C -0.038 4.038 17 C 0.013 3.987 18 C -0.134 4.134 19 C -0.174 4.174 20 H 0.262 0.738 21 H -0.035 1.035 22 H 0.001 0.999 23 H 0.026 0.974 24 H 0.071 0.929 25 H 0.147 0.853 26 H 0.237 0.763 27 H 0.212 0.788 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.021 -12.890 -1.826 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.542 4.542 8 H 0.086 0.914 9 C 0.083 3.917 10 N -0.234 5.234 11 C -0.003 4.003 12 C -0.176 4.176 13 C -0.232 4.232 14 C -0.107 4.107 15 O -0.084 6.084 16 C -0.106 4.106 17 C -0.096 4.096 18 C -0.172 4.172 19 C -0.211 4.211 20 H 0.071 0.929 21 H -0.017 1.017 22 H 0.019 0.981 23 H 0.044 0.956 24 H 0.089 0.911 25 H 0.164 0.836 26 H 0.253 0.747 27 H 0.229 0.771 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.477 -12.798 -1.329 15.409 hybrid contribution -1.179 1.085 -0.613 1.715 sum 7.298 -11.713 -1.942 13.937 Atomic orbital electron populations 1.70088 1.07675 1.27594 1.52625 1.25843 0.95622 1.02877 0.95345 0.85488 0.78643 0.78821 0.78346 1.19932 1.21028 1.18949 1.21493 0.93628 0.90518 1.48547 0.91412 1.19395 0.89780 0.89066 0.93445 1.61901 1.39292 1.03002 1.19225 1.20312 0.92726 0.87608 0.99659 1.20301 1.02037 0.99915 0.95337 1.21791 1.01673 0.98998 1.00698 1.24576 1.00557 1.02873 0.82691 1.84052 1.51433 1.43343 1.29543 1.24057 0.93079 0.92048 1.01416 1.22051 0.93049 1.04804 0.89704 1.22848 0.94205 0.97899 1.02200 1.23090 1.03848 0.93291 1.00919 0.92935 1.01696 0.98068 0.95554 0.91094 0.83560 0.74655 0.77139 0.91645 0.90031 0.87311 0.88843 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.88 13.29 21.45 0.28 -56.60 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.50 -28.34 7.82 25.60 0.20 -28.14 16 8 H 0.07 3.75 5.79 -2.91 -0.02 3.74 16 9 C 0.21 11.22 4.77 85.56 0.41 11.63 16 10 N -0.51 -22.39 4.56 -880.06 -4.01 -26.41 16 11 C 0.12 4.67 5.46 85.56 0.47 5.14 16 12 C -0.17 -5.45 4.86 -19.94 -0.10 -5.54 16 13 C -0.21 -5.55 9.68 22.19 0.21 -5.34 16 14 C -0.04 -0.87 12.09 66.97 0.81 -0.06 16 15 O -0.19 -4.84 10.65 -2.53 -0.03 -4.87 16 16 C -0.04 -1.07 12.01 66.97 0.80 -0.26 16 17 C 0.01 0.51 4.15 44.91 0.19 0.70 16 18 C -0.13 -4.37 9.23 30.59 0.28 -4.09 16 19 C -0.17 -6.72 9.47 30.59 0.29 -6.43 16 20 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 21 H -0.03 -2.06 7.99 -2.39 -0.02 -2.08 16 22 H 0.00 0.07 7.73 -2.39 -0.02 0.05 16 23 H 0.03 0.99 8.12 -2.38 -0.02 0.97 16 24 H 0.07 2.65 7.82 -2.39 -0.02 2.63 16 25 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 26 H 0.24 2.80 8.06 -2.91 -0.02 2.78 16 27 H 0.21 5.14 8.06 -2.91 -0.02 5.12 16 28 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.08 2.81 8.14 -2.38 -0.02 2.80 16 30 H 0.11 2.87 8.14 -2.38 -0.02 2.85 16 31 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 32 H 0.09 3.95 5.45 -2.39 -0.01 3.94 16 Total: -1.00 -65.25 272.30 3.40 -61.85 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 1.10 Total: 11.35 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 4.03 Total: -31.92 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -3.73 Total: -83.00 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.03 Total: -4.87 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.25 3.40 -61.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124045077.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.549 kcal (2) G-P(sol) polarization free energy of solvation -65.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds