Wall clock time and date at job start Sun Mar 29 2020 21:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38172 * 120.02950 * 2 1 4 4 C 1.38242 * 120.05463 * 180.02562 * 3 2 1 5 5 C 1.38288 * 120.11392 * 359.76615 * 4 3 2 6 6 C 1.38121 * 120.05538 * 0.51280 * 5 4 3 7 7 C 1.50697 * 120.02990 * 179.74255 * 6 5 4 8 8 N 1.46905 * 109.47066 * 259.72657 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00162 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00023 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99532 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00003 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47043 * 89.99858 * 14 12 10 16 16 H 1.48494 * 109.47326 * 209.99769 * 14 12 10 17 17 H 1.48497 * 109.47436 * 330.00047 * 14 12 10 18 18 C 1.38714 * 120.02815 * 180.02562 * 2 1 3 19 19 O 1.35902 * 120.05645 * 359.97438 * 18 2 1 20 20 H 1.09000 * 109.46614 * 269.97247 * 1 2 3 21 21 H 1.09001 * 109.47069 * 29.97140 * 1 2 3 22 22 H 1.09000 * 109.46905 * 149.97740 * 1 2 3 23 23 H 1.08001 * 119.97170 * 0.02562 * 3 2 1 24 24 H 1.08001 * 119.94274 * 180.02562 * 4 3 2 25 25 H 1.07997 * 119.97146 * 180.25718 * 5 4 3 26 26 H 1.09001 * 109.47558 * 139.72820 * 7 6 5 27 27 H 1.08998 * 109.47216 * 19.72483 * 7 6 5 28 28 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 29 29 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 30 30 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 31 31 H 0.97001 * 119.99132 * 180.02562 * 13 12 10 32 32 H 0.96696 * 113.99552 * 269.98260 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1969 -0.0005 5 6 4.2752 0.0009 0.0038 6 6 3.5887 -1.1976 -0.0020 7 6 4.3460 -2.5005 -0.0031 8 7 4.3832 -3.0440 -1.3674 9 6 5.1147 -4.3174 -1.4070 10 6 5.1323 -4.8428 -2.8193 11 1 4.6482 -4.2867 -3.6084 12 6 5.7657 -6.0341 -3.1038 13 7 6.3548 -6.7114 -2.1426 14 14 5.7869 -6.6858 -4.8542 15 1 6.9851 -6.1663 -5.5613 16 1 5.8315 -8.1698 -4.8294 17 1 4.5612 -6.2391 -5.5637 18 6 2.2011 -1.2010 -0.0005 19 8 1.5234 -2.3789 -0.0005 20 1 -0.3632 -0.0005 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6585 2.1316 0.0004 24 1 4.1195 2.1329 -0.0001 25 1 5.3552 0.0041 0.0076 26 1 3.8484 -3.2106 0.6574 27 1 5.3637 -2.3295 0.3477 28 1 4.7819 -2.3774 -2.0115 29 1 6.1378 -4.1594 -1.0657 30 1 4.6220 -5.0397 -0.7562 31 1 6.8006 -7.5493 -2.3429 32 1 1.3278 -2.7201 0.8829 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159151113.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:02 Heat of formation + Delta-G solvation = -28.357438 kcal Electronic energy + Delta-G solvation = -14415.346243 eV Core-core repulsion = 11954.481801 eV Total energy + Delta-G solvation = -2460.864442 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.82792 -36.35752 -35.41261 -32.98801 -31.93803 -30.03983 -26.96844 -26.67096 -24.27656 -21.76208 -21.37426 -20.43298 -18.04793 -16.49060 -15.91584 -15.59028 -14.95245 -14.48760 -14.17432 -13.62559 -13.28853 -13.17672 -12.98633 -12.47623 -12.20748 -11.80950 -11.64970 -11.51127 -11.23238 -10.92253 -10.68276 -10.64042 -10.13040 -9.85208 -9.16268 -8.52565 -8.43939 -8.31722 -7.20463 -5.99718 -4.01011 1.42364 1.45775 3.34816 3.40480 3.46319 3.75766 4.46286 4.48609 4.90989 4.94094 5.08623 5.32607 5.36281 5.49521 5.59318 5.63521 5.70269 5.82164 5.98150 6.03823 6.22348 6.32862 6.56376 6.57231 6.78543 6.99898 7.27980 7.45105 7.82881 7.97593 8.16546 8.44880 8.65684 9.08369 9.63592 11.11531 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042951 B = 0.005678 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.744500 B = 4929.790314 C = 5112.294659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.120 4.120 3 C -0.115 4.115 4 C -0.130 4.130 5 C -0.109 4.109 6 C -0.094 4.094 7 C 0.103 3.897 8 N -0.676 5.676 9 C 0.195 3.805 10 C -0.511 4.511 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.900 5.900 14 Si 0.899 3.101 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.128 3.872 19 O -0.478 6.478 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.328 0.672 29 H -0.015 1.015 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 14.303 7.174 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.120 4.120 3 C -0.134 4.134 4 C -0.148 4.148 5 C -0.127 4.127 6 C -0.095 4.095 7 C -0.026 4.026 8 N -0.307 5.307 9 C 0.068 3.932 10 C -0.550 4.550 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.727 3.273 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.197 1.197 18 C 0.083 3.917 19 O -0.287 6.287 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.138 0.862 24 H 0.138 0.862 25 H 0.140 0.860 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.144 0.856 29 H 0.003 0.997 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -8.401 13.850 6.645 17.509 hybrid contribution 1.060 -0.198 -0.295 1.118 sum -7.341 13.653 6.350 16.751 Atomic orbital electron populations 1.20652 0.91009 1.03086 1.01852 1.20220 0.96521 0.92710 1.02571 1.20840 0.94152 0.96871 1.01509 1.21041 0.94189 0.97818 1.01741 1.20997 0.99853 0.91629 1.00258 1.20439 0.93435 0.95923 0.99684 1.20693 0.96137 0.91606 0.94190 1.60666 1.59579 1.06892 1.03516 1.19569 0.90510 0.85420 0.97673 1.21192 1.33841 1.06084 0.93871 0.91968 1.24987 0.95421 0.96716 0.97483 1.69969 1.36374 1.15622 1.31967 0.86472 0.78405 0.77865 0.84527 1.20748 1.21240 1.19750 1.18106 0.89181 0.84904 0.99527 1.84929 1.75872 1.35680 1.32209 0.91730 0.91850 0.90762 0.86226 0.86218 0.86012 0.91060 0.95724 0.85606 0.99734 0.95359 0.92963 0.76399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.79 36.00 0.35 -0.82 16 2 C -0.12 -1.60 5.89 -104.47 -0.62 -2.21 16 3 C -0.12 -1.39 9.70 -39.60 -0.38 -1.78 16 4 C -0.13 -1.59 10.04 -39.56 -0.40 -1.99 16 5 C -0.11 -1.54 9.66 -39.61 -0.38 -1.92 16 6 C -0.09 -1.53 5.41 -104.47 -0.56 -2.09 16 7 C 0.10 1.94 5.48 -4.97 -0.03 1.91 16 8 N -0.68 -15.49 6.48 -116.34 -0.75 -16.24 16 9 C 0.19 5.30 5.44 -4.98 -0.03 5.27 16 10 C -0.51 -15.02 9.32 -34.44 -0.32 -15.34 16 11 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 12 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 14 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.13 2.00 6.65 -39.21 -0.26 1.74 16 19 O -0.48 -7.50 11.79 -19.43 -0.23 -7.72 16 20 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 22 H 0.07 0.87 7.53 -51.93 -0.39 0.47 16 23 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 24 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 25 H 0.12 1.57 8.03 -52.49 -0.42 1.15 16 26 H 0.07 1.33 7.85 -51.93 -0.41 0.92 16 27 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 28 H 0.33 7.32 8.72 -39.29 -0.34 6.98 16 29 H -0.02 -0.43 8.14 -51.93 -0.42 -0.85 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.38 4.13 9.06 45.56 0.41 4.54 16 LS Contribution 279.20 15.07 4.21 4.21 Total: -1.00 -32.81 279.20 -7.43 -40.23 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -3.64 Total: 4.70 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -2.73 Total: -15.72 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.02 Total: -42.92 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.23 Total: -7.72 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.81 -7.43 -40.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159151113.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.877 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds