Wall clock time and date at job start Sun Mar 29 2020 21:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38172 * 120.02950 * 2 1 4 4 C 1.38242 * 120.05463 * 180.02562 * 3 2 1 5 5 C 1.38288 * 120.11392 * 359.76615 * 4 3 2 6 6 C 1.38121 * 120.05538 * 0.51280 * 5 4 3 7 7 C 1.50697 * 120.02990 * 179.74255 * 6 5 4 8 8 N 1.46905 * 109.47066 * 259.72657 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00162 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00023 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99532 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00003 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47043 * 89.99858 * 14 12 10 16 16 H 1.48494 * 109.47326 * 209.99769 * 14 12 10 17 17 H 1.48497 * 109.47436 * 330.00047 * 14 12 10 18 18 C 1.38714 * 120.02815 * 180.02562 * 2 1 3 19 19 O 1.35902 * 120.05645 * 359.97438 * 18 2 1 20 20 H 1.09000 * 109.46614 * 269.97247 * 1 2 3 21 21 H 1.09001 * 109.47069 * 29.97140 * 1 2 3 22 22 H 1.09000 * 109.46905 * 149.97740 * 1 2 3 23 23 H 1.08001 * 119.97170 * 0.02562 * 3 2 1 24 24 H 1.08001 * 119.94274 * 180.02562 * 4 3 2 25 25 H 1.07997 * 119.97146 * 180.25718 * 5 4 3 26 26 H 1.09001 * 109.47558 * 139.72820 * 7 6 5 27 27 H 1.08998 * 109.47216 * 19.72483 * 7 6 5 28 28 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 29 29 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 30 30 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 31 31 H 0.97001 * 119.99132 * 180.02562 * 13 12 10 32 32 H 0.96696 * 113.99552 * 269.98260 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1969 -0.0005 5 6 4.2752 0.0009 0.0038 6 6 3.5887 -1.1976 -0.0020 7 6 4.3460 -2.5005 -0.0031 8 7 4.3832 -3.0440 -1.3674 9 6 5.1147 -4.3174 -1.4070 10 6 5.1323 -4.8428 -2.8193 11 1 4.6482 -4.2867 -3.6084 12 6 5.7657 -6.0341 -3.1038 13 7 6.3548 -6.7114 -2.1426 14 14 5.7869 -6.6858 -4.8542 15 1 6.9851 -6.1663 -5.5613 16 1 5.8315 -8.1698 -4.8294 17 1 4.5612 -6.2391 -5.5637 18 6 2.2011 -1.2010 -0.0005 19 8 1.5234 -2.3789 -0.0005 20 1 -0.3632 -0.0005 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6585 2.1316 0.0004 24 1 4.1195 2.1329 -0.0001 25 1 5.3552 0.0041 0.0076 26 1 3.8484 -3.2106 0.6574 27 1 5.3637 -2.3295 0.3477 28 1 4.7819 -2.3774 -2.0115 29 1 6.1378 -4.1594 -1.0657 30 1 4.6220 -5.0397 -0.7562 31 1 6.8006 -7.5493 -2.3429 32 1 1.3278 -2.7201 0.8829 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159151113.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:01 Heat of formation + Delta-G solvation = -52.345593 kcal Electronic energy + Delta-G solvation = -14416.386447 eV Core-core repulsion = 11954.481801 eV Total energy + Delta-G solvation = -2461.904646 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.92658 -37.49143 -37.14734 -34.83566 -33.38962 -31.34308 -28.80488 -27.66338 -25.96289 -23.52866 -22.74632 -21.63839 -19.18676 -18.60293 -17.19280 -16.78087 -16.67095 -15.98503 -15.69372 -15.10314 -14.83622 -14.49887 -14.07770 -13.89053 -13.50331 -13.30255 -12.99158 -12.94299 -12.69677 -12.62353 -12.49228 -12.15384 -11.92095 -11.40892 -11.13646 -10.68112 -9.61917 -9.37537 -9.10273 -8.24452 -6.35930 0.37372 0.39506 1.39556 1.41903 1.54052 2.39032 2.71237 3.08432 3.43257 3.69016 3.81421 3.98743 4.15424 4.36515 4.47763 4.55698 4.64057 4.82606 4.83757 4.94546 5.04851 5.09650 5.22173 5.33632 5.54184 5.55756 5.58724 5.68108 5.99056 6.02057 6.41811 6.67621 6.84933 6.96562 7.34855 8.87239 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042951 B = 0.005678 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.744500 B = 4929.790314 C = 5112.294659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.126 4.126 3 C -0.109 4.109 4 C -0.125 4.125 5 C -0.117 4.117 6 C -0.120 4.120 7 C 0.108 3.892 8 N -0.678 5.678 9 C 0.211 3.789 10 C -0.537 4.537 11 H 0.060 0.940 12 C 0.002 3.998 13 N -0.934 5.934 14 Si 0.976 3.024 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.267 1.267 18 C 0.109 3.891 19 O -0.500 6.500 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.154 0.846 24 H 0.152 0.848 25 H 0.128 0.872 26 H 0.063 0.937 27 H 0.026 0.974 28 H 0.330 0.670 29 H -0.038 1.038 30 H 0.000 1.000 31 H 0.266 0.734 32 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.698 16.163 6.433 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.127 4.127 3 C -0.127 4.127 4 C -0.143 4.143 5 C -0.135 4.135 6 C -0.121 4.121 7 C -0.021 4.021 8 N -0.308 5.308 9 C 0.083 3.917 10 C -0.576 4.576 11 H 0.078 0.922 12 C -0.196 4.196 13 N -0.574 5.574 14 Si 0.799 3.201 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.192 1.192 18 C 0.063 3.937 19 O -0.311 6.311 20 H 0.101 0.899 21 H 0.101 0.899 22 H 0.077 0.923 23 H 0.172 0.828 24 H 0.170 0.830 25 H 0.146 0.854 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.147 0.853 29 H -0.020 1.020 30 H 0.018 0.982 31 H 0.075 0.925 32 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -9.194 15.730 5.927 19.160 hybrid contribution 1.270 -0.701 0.022 1.451 sum -7.925 15.029 5.948 18.001 Atomic orbital electron populations 1.20678 0.89191 1.03264 1.03108 1.20541 0.97980 0.92259 1.01887 1.21289 0.94294 0.97679 0.99398 1.21408 0.94596 0.98174 1.00139 1.21169 1.00411 0.91716 1.00239 1.20275 0.93868 0.95122 1.02855 1.20631 0.96705 0.93118 0.91640 1.60541 1.58412 1.05745 1.06115 1.19207 0.89239 0.86939 0.96318 1.21514 1.34523 1.06901 0.94626 0.92170 1.25963 0.94542 0.96738 1.02360 1.70091 1.36757 1.16085 1.34432 0.85295 0.78860 0.77330 0.78579 1.19421 1.20383 1.19174 1.18356 0.89114 0.85662 1.00529 1.84867 1.75950 1.36360 1.33962 0.89886 0.89939 0.92259 0.82807 0.83025 0.85362 0.91823 0.95560 0.85298 1.02036 0.98198 0.92500 0.74613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 9.79 71.24 0.70 -1.31 16 2 C -0.13 -3.11 5.89 -19.77 -0.12 -3.23 16 3 C -0.11 -2.24 9.70 22.26 0.22 -2.03 16 4 C -0.13 -2.69 10.04 22.28 0.22 -2.47 16 5 C -0.12 -3.17 9.66 22.25 0.22 -2.95 16 6 C -0.12 -3.93 5.41 -19.77 -0.11 -4.04 16 7 C 0.11 4.21 5.48 85.55 0.47 4.68 16 8 N -0.68 -32.12 6.48 -521.98 -3.38 -35.50 16 9 C 0.21 11.96 5.44 85.56 0.47 12.42 16 10 C -0.54 -32.26 9.32 25.60 0.24 -32.02 16 11 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 12 C 0.00 0.13 5.46 84.66 0.46 0.59 16 13 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 14 Si 0.98 45.66 29.54 68.60 2.03 47.68 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 18 C 0.11 3.35 6.65 22.51 0.15 3.50 16 19 O -0.50 -15.97 11.79 -92.45 -1.09 -17.06 16 20 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 22 H 0.06 1.31 7.53 -2.39 -0.02 1.29 16 23 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 24 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 25 H 0.13 3.20 8.03 -2.91 -0.02 3.17 16 26 H 0.06 2.51 7.85 -2.39 -0.02 2.50 16 27 H 0.03 1.00 8.00 -2.39 -0.02 0.98 16 28 H 0.33 15.17 8.72 -89.69 -0.78 14.39 16 29 H -0.04 -2.28 8.14 -2.39 -0.02 -2.30 16 30 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.40 8.92 9.06 -74.06 -0.67 8.25 16 Total: -1.00 -71.16 279.20 0.42 -70.74 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -0.33 Total: 18.50 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 2.91 Total: -26.84 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -3.10 Total: -93.02 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -1.09 Total: -17.06 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -71.16 0.42 -70.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159151113.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.391 kcal (2) G-P(sol) polarization free energy of solvation -71.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds