Wall clock time and date at job start Sun Mar 29 2020 22:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 O 1.42906 * 109.46938 * 185.00060 * 3 2 1 5 5 N 1.46507 * 109.46562 * 239.99953 * 2 1 3 6 6 C 1.36935 * 119.99742 * 60.00445 * 5 2 1 7 7 H 1.07999 * 120.00083 * 359.97438 * 6 5 2 8 8 C 1.38817 * 119.99986 * 179.97438 * 6 5 2 9 9 N 1.31617 * 119.99464 * 0.27719 * 8 6 5 10 10 Si 1.86800 * 119.99902 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47035 * 60.00419 * 10 8 6 12 12 H 1.48503 * 109.46845 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47237 * 300.00175 * 10 8 6 14 14 C 1.50699 * 109.47244 * 120.00729 * 2 1 3 15 15 C 1.38241 * 119.99724 * 269.72457 * 14 2 1 16 16 C 1.38232 * 119.99969 * 179.79339 * 15 14 2 17 17 C 1.38232 * 120.00249 * 0.43212 * 16 15 14 18 18 C 1.38238 * 119.99768 * 359.81540 * 17 16 15 19 19 C 1.38234 * 120.00182 * 359.97438 * 18 17 16 20 20 H 1.09000 * 109.47603 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47105 * 299.99683 * 1 2 3 22 22 H 1.08998 * 109.47444 * 59.99585 * 1 2 3 23 23 H 1.08996 * 109.46984 * 305.00360 * 3 2 1 24 24 H 1.09007 * 109.46842 * 65.00472 * 3 2 1 25 25 H 0.96697 * 113.99474 * 180.02562 * 4 3 2 26 26 H 0.96999 * 120.00180 * 239.99372 * 5 2 1 27 27 H 0.97001 * 120.00638 * 359.71685 * 9 8 6 28 28 H 1.08005 * 119.99741 * 359.97438 * 15 14 2 29 29 H 1.07999 * 119.99752 * 180.27500 * 16 15 14 30 30 H 1.08001 * 120.00575 * 179.84061 * 17 16 15 31 31 H 1.08002 * 120.00312 * 179.97438 * 18 17 16 32 32 H 1.07999 * 120.00219 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4642 1.4441 -0.1174 5 7 2.0182 -0.6907 -1.1963 6 6 1.6873 -0.2227 -2.4399 7 1 1.0662 0.6552 -2.5389 8 6 2.1504 -0.8768 -3.5734 9 7 2.9028 -1.9499 -3.4527 10 14 1.6984 -0.2389 -5.2700 11 1 2.2009 1.1497 -5.4267 12 1 2.3140 -1.1073 -6.3054 13 1 0.2217 -0.2516 -5.4264 14 6 2.0323 -0.7106 1.2304 15 6 2.2682 0.0013 2.3917 16 6 2.7249 -0.6511 3.5216 17 6 2.9543 -2.0139 3.4876 18 6 2.7234 -2.7248 2.3248 19 6 2.2625 -2.0732 1.1961 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.6053 1.9815 -0.8417 24 1 1.7517 1.9297 0.9315 25 1 3.8572 2.3276 -0.1237 26 1 2.5759 -1.4793 -1.1073 27 1 3.1373 -2.2813 -2.5717 28 1 2.0927 1.0667 2.4171 29 1 2.9049 -0.0957 4.4301 30 1 3.3136 -2.5232 4.3696 31 1 2.9031 -3.7895 2.2980 32 1 2.0825 -2.6286 0.2876 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161158808.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:54 Heat of formation + Delta-G solvation = -5.966433 kcal Electronic energy + Delta-G solvation = -15307.083080 eV Core-core repulsion = 12847.189585 eV Total energy + Delta-G solvation = -2459.893495 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.37863 -36.76095 -34.74362 -32.54790 -30.61250 -29.56627 -28.10712 -25.47068 -24.00449 -22.22727 -21.81901 -19.09006 -17.35377 -16.78291 -16.46263 -15.24878 -14.73670 -14.23738 -13.75659 -13.63848 -13.40634 -13.09437 -12.76078 -12.22193 -11.91355 -11.68454 -11.50098 -11.21439 -10.81315 -10.69313 -10.40770 -9.99527 -9.81517 -9.35772 -9.04907 -8.88019 -8.54047 -8.27516 -6.96039 -6.02469 -3.00658 1.76377 1.78215 3.53480 3.57611 3.74873 4.18584 4.69446 4.91506 5.14394 5.22015 5.28710 5.46601 5.50983 5.62876 5.78919 5.90918 5.93466 6.03190 6.21181 6.32717 6.33139 6.38004 6.52274 6.59220 6.81332 6.85527 6.95548 7.12941 7.38957 7.83807 8.31040 8.82705 9.29225 10.15612 10.31911 11.45942 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037599 B = 0.008848 C = 0.008090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.520490 B = 3163.897579 C = 3460.403184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.240 3.760 3 C 0.073 3.927 4 O -0.548 6.548 5 N -0.717 5.717 6 C -0.319 4.319 7 H 0.062 0.938 8 C -0.046 4.046 9 N -0.944 5.944 10 Si 1.078 2.922 11 H -0.297 1.297 12 H -0.286 1.286 13 H -0.296 1.296 14 C -0.052 4.052 15 C -0.115 4.115 16 C -0.126 4.126 17 C -0.135 4.135 18 C -0.121 4.121 19 C -0.109 4.109 20 H 0.057 0.943 21 H 0.041 0.959 22 H 0.062 0.938 23 H 0.044 0.956 24 H 0.027 0.973 25 H 0.359 0.641 26 H 0.370 0.630 27 H 0.255 0.745 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 4.296 12.113 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.148 3.852 3 C -0.007 4.007 4 O -0.350 6.350 5 N -0.360 5.360 6 C -0.450 4.450 7 H 0.080 0.920 8 C -0.243 4.243 9 N -0.590 5.590 10 Si 0.910 3.090 11 H -0.225 1.225 12 H -0.211 1.211 13 H -0.224 1.224 14 C -0.053 4.053 15 C -0.133 4.133 16 C -0.144 4.144 17 C -0.154 4.154 18 C -0.139 4.139 19 C -0.127 4.127 20 H 0.076 0.924 21 H 0.060 0.940 22 H 0.081 0.919 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.203 0.797 26 H 0.206 0.794 27 H 0.066 0.934 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.393 3.542 10.388 11.233 hybrid contribution 0.084 0.805 1.677 1.862 sum -2.309 4.347 12.065 13.030 Atomic orbital electron populations 1.22154 0.95909 1.01959 1.00456 1.18452 0.92064 0.89460 0.85218 1.22768 0.81793 0.98825 0.97356 1.86668 1.19870 1.31418 1.97052 1.42417 1.60922 1.32369 1.00286 1.19891 1.29124 1.11275 0.84710 0.91963 1.25679 0.99045 0.97492 1.02112 1.70854 1.39104 1.23883 1.25149 0.83262 0.75231 0.74850 0.75680 1.22488 1.21102 1.22402 1.20061 0.96563 0.93808 0.94854 1.20994 1.00101 0.99501 0.92704 1.21006 1.00699 0.94683 0.97982 1.21008 1.01934 0.94492 0.97925 1.21103 0.99954 0.99631 0.93248 1.21116 0.98726 0.94539 0.98364 0.92399 0.94046 0.91884 0.93819 0.95479 0.79699 0.79444 0.93422 0.86451 0.86745 0.86798 0.86499 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.42 37.16 0.31 -2.43 16 2 C 0.24 4.98 0.76 -132.97 -0.10 4.88 16 3 C 0.07 1.39 5.17 37.16 0.19 1.58 16 4 O -0.55 -11.04 13.10 -35.23 -0.46 -11.50 16 5 N -0.72 -18.25 4.66 -48.30 -0.22 -18.47 16 6 C -0.32 -8.91 8.71 -15.06 -0.13 -9.05 16 7 H 0.06 1.70 6.74 -52.49 -0.35 1.35 16 8 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 9 N -0.94 -29.69 13.70 55.49 0.76 -28.93 16 10 Si 1.08 26.28 29.92 -169.99 -5.09 21.20 16 11 H -0.30 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.30 -6.87 7.11 56.52 0.40 -6.46 16 14 C -0.05 -1.00 4.60 -104.62 -0.48 -1.48 16 15 C -0.11 -1.88 9.07 -39.58 -0.36 -2.24 16 16 C -0.13 -1.82 10.05 -39.59 -0.40 -2.22 16 17 C -0.14 -1.95 10.05 -39.58 -0.40 -2.35 16 18 C -0.12 -1.93 10.05 -39.58 -0.40 -2.33 16 19 C -0.11 -2.06 8.96 -39.58 -0.35 -2.41 16 20 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 1.24 7.27 -51.93 -0.38 0.86 16 23 H 0.04 0.87 7.45 -51.93 -0.39 0.48 16 24 H 0.03 0.43 6.21 -51.93 -0.32 0.11 16 25 H 0.36 5.34 9.12 45.56 0.42 5.75 16 26 H 0.37 9.95 4.70 -40.82 -0.19 9.76 16 27 H 0.25 7.96 6.77 -40.82 -0.28 7.68 16 28 H 0.12 1.74 6.04 -52.48 -0.32 1.42 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.13 2.55 6.71 -52.49 -0.35 2.20 16 LS Contribution 265.51 15.07 4.00 4.00 Total: -1.00 -33.12 265.51 -6.29 -39.42 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -3.07 Total: 13.78 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -2.21 Total: -19.49 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.54 Total: -47.40 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.46 Total: -11.50 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -5.09 Total: 21.20 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.12 -6.29 -39.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161158808.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.450 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds