Wall clock time and date at job start Sun Mar 29 2020 22:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 O 1.42906 * 109.46938 * 185.00060 * 3 2 1 5 5 N 1.46507 * 109.46562 * 239.99953 * 2 1 3 6 6 C 1.36935 * 119.99742 * 60.00445 * 5 2 1 7 7 H 1.07999 * 120.00083 * 359.97438 * 6 5 2 8 8 C 1.38817 * 119.99986 * 179.97438 * 6 5 2 9 9 N 1.31617 * 119.99464 * 0.27719 * 8 6 5 10 10 Si 1.86800 * 119.99902 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47035 * 60.00419 * 10 8 6 12 12 H 1.48503 * 109.46845 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47237 * 300.00175 * 10 8 6 14 14 C 1.50699 * 109.47244 * 120.00729 * 2 1 3 15 15 C 1.38241 * 119.99724 * 269.72457 * 14 2 1 16 16 C 1.38232 * 119.99969 * 179.79339 * 15 14 2 17 17 C 1.38232 * 120.00249 * 0.43212 * 16 15 14 18 18 C 1.38238 * 119.99768 * 359.81540 * 17 16 15 19 19 C 1.38234 * 120.00182 * 359.97438 * 18 17 16 20 20 H 1.09000 * 109.47603 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47105 * 299.99683 * 1 2 3 22 22 H 1.08998 * 109.47444 * 59.99585 * 1 2 3 23 23 H 1.08996 * 109.46984 * 305.00360 * 3 2 1 24 24 H 1.09007 * 109.46842 * 65.00472 * 3 2 1 25 25 H 0.96697 * 113.99474 * 180.02562 * 4 3 2 26 26 H 0.96999 * 120.00180 * 239.99372 * 5 2 1 27 27 H 0.97001 * 120.00638 * 359.71685 * 9 8 6 28 28 H 1.08005 * 119.99741 * 359.97438 * 15 14 2 29 29 H 1.07999 * 119.99752 * 180.27500 * 16 15 14 30 30 H 1.08001 * 120.00575 * 179.84061 * 17 16 15 31 31 H 1.08002 * 120.00312 * 179.97438 * 18 17 16 32 32 H 1.07999 * 120.00219 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4642 1.4441 -0.1174 5 7 2.0182 -0.6907 -1.1963 6 6 1.6873 -0.2227 -2.4399 7 1 1.0662 0.6552 -2.5389 8 6 2.1504 -0.8768 -3.5734 9 7 2.9028 -1.9499 -3.4527 10 14 1.6984 -0.2389 -5.2700 11 1 2.2009 1.1497 -5.4267 12 1 2.3140 -1.1073 -6.3054 13 1 0.2217 -0.2516 -5.4264 14 6 2.0323 -0.7106 1.2304 15 6 2.2682 0.0013 2.3917 16 6 2.7249 -0.6511 3.5216 17 6 2.9543 -2.0139 3.4876 18 6 2.7234 -2.7248 2.3248 19 6 2.2625 -2.0732 1.1961 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.6053 1.9815 -0.8417 24 1 1.7517 1.9297 0.9315 25 1 3.8572 2.3276 -0.1237 26 1 2.5759 -1.4793 -1.1073 27 1 3.1373 -2.2813 -2.5717 28 1 2.0927 1.0667 2.4171 29 1 2.9049 -0.0957 4.4301 30 1 3.3136 -2.5232 4.3696 31 1 2.9031 -3.7895 2.2980 32 1 2.0825 -2.6286 0.2876 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161158808.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:53 Heat of formation + Delta-G solvation = -29.884776 kcal Electronic energy + Delta-G solvation = -15308.120257 eV Core-core repulsion = 12847.189585 eV Total energy + Delta-G solvation = -2460.930672 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.75848 -38.24214 -36.45655 -34.42690 -31.90968 -31.10982 -29.82992 -26.98473 -25.98665 -23.69808 -23.13498 -20.64942 -19.19107 -18.33729 -18.08771 -16.71194 -16.22012 -15.74308 -15.51282 -15.25854 -14.93844 -14.63500 -14.08113 -13.73559 -13.41331 -13.14794 -13.04568 -12.85560 -12.55913 -12.29930 -11.95776 -11.80665 -11.46563 -11.16657 -10.93580 -10.70738 -9.78707 -9.59537 -9.03270 -8.31823 -5.22987 0.50986 0.52901 1.56323 1.67449 1.82821 2.73365 2.93145 3.43454 3.49352 3.66421 3.84318 4.05615 4.16327 4.26721 4.37579 4.47641 4.63746 4.68928 4.70325 4.79948 4.94247 4.97659 5.14476 5.21136 5.34478 5.59380 5.61684 5.63828 5.81903 6.16142 6.54339 7.02628 7.16446 8.05469 8.20834 9.20045 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037599 B = 0.008848 C = 0.008090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.520490 B = 3163.897579 C = 3460.403184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.225 3.775 3 C 0.078 3.922 4 O -0.575 6.575 5 N -0.731 5.731 6 C -0.304 4.304 7 H 0.068 0.932 8 C -0.115 4.115 9 N -0.981 5.981 10 Si 1.126 2.874 11 H -0.280 1.280 12 H -0.297 1.297 13 H -0.277 1.277 14 C -0.076 4.076 15 C -0.119 4.119 16 C -0.118 4.118 17 C -0.129 4.129 18 C -0.127 4.127 19 C -0.139 4.139 20 H 0.042 0.958 21 H 0.077 0.923 22 H 0.049 0.951 23 H 0.030 0.970 24 H 0.069 0.931 25 H 0.381 0.619 26 H 0.357 0.643 27 H 0.239 0.761 28 H 0.136 0.864 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.133 0.867 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 5.909 14.412 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.135 3.865 3 C -0.002 4.002 4 O -0.380 6.380 5 N -0.373 5.373 6 C -0.436 4.436 7 H 0.086 0.914 8 C -0.305 4.305 9 N -0.630 5.630 10 Si 0.952 3.048 11 H -0.207 1.207 12 H -0.223 1.223 13 H -0.203 1.203 14 C -0.076 4.076 15 C -0.137 4.137 16 C -0.136 4.136 17 C -0.147 4.147 18 C -0.145 4.145 19 C -0.158 4.158 20 H 0.061 0.939 21 H 0.095 0.905 22 H 0.068 0.932 23 H 0.048 0.952 24 H 0.087 0.913 25 H 0.228 0.772 26 H 0.191 0.809 27 H 0.049 0.951 28 H 0.154 0.846 29 H 0.171 0.829 30 H 0.169 0.831 31 H 0.151 0.849 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.723 5.211 12.742 14.033 hybrid contribution 0.179 0.322 1.143 1.200 sum -2.544 5.532 13.885 15.161 Atomic orbital electron populations 1.22052 0.94788 1.01331 1.01522 1.18829 0.92847 0.90409 0.84405 1.22683 0.81336 0.97360 0.98823 1.86616 1.20498 1.33740 1.97195 1.42640 1.60911 1.32503 1.01271 1.20213 1.27184 1.10305 0.85868 0.91448 1.27096 0.99594 0.97679 1.06093 1.70972 1.41980 1.25975 1.24122 0.82639 0.75982 0.74775 0.71428 1.20681 1.22287 1.20329 1.20010 0.98496 0.93878 0.95217 1.21213 0.99933 1.00339 0.92259 1.21474 0.98617 0.94931 0.98584 1.21455 1.00249 0.94762 0.98191 1.21345 0.99411 1.00713 0.93027 1.21035 1.01265 0.95011 0.98477 0.93908 0.90458 0.93167 0.95201 0.91320 0.77201 0.80934 0.95085 0.84638 0.82869 0.83123 0.84894 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.42 71.98 0.61 -4.53 16 2 C 0.23 9.29 0.76 2.85 0.00 9.29 16 3 C 0.08 2.83 5.17 71.98 0.37 3.20 16 4 O -0.58 -22.48 13.10 -148.98 -1.95 -24.43 16 5 N -0.73 -38.39 4.66 -306.74 -1.43 -39.82 16 6 C -0.30 -17.33 8.71 84.04 0.73 -16.59 16 7 H 0.07 3.70 6.74 -2.91 -0.02 3.68 16 8 C -0.11 -6.87 5.50 84.86 0.47 -6.40 16 9 N -0.98 -64.18 13.70 21.65 0.30 -63.89 16 10 Si 1.13 53.72 29.92 68.60 2.05 55.77 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 13 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 14 C -0.08 -2.83 4.60 -19.86 -0.09 -2.92 16 15 C -0.12 -3.56 9.07 22.27 0.20 -3.36 16 16 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 17 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 18 C -0.13 -3.91 10.05 22.27 0.22 -3.69 16 19 C -0.14 -5.37 8.96 22.27 0.20 -5.17 16 20 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 22 H 0.05 1.95 7.27 -2.39 -0.02 1.93 16 23 H 0.03 1.15 7.45 -2.39 -0.02 1.13 16 24 H 0.07 1.93 6.21 -2.38 -0.01 1.92 16 25 H 0.38 10.65 9.12 -74.06 -0.68 9.97 16 26 H 0.36 20.34 4.70 -92.71 -0.44 19.90 16 27 H 0.24 15.82 6.77 -92.71 -0.63 15.19 16 28 H 0.14 3.44 6.04 -2.91 -0.02 3.42 16 29 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.13 3.51 8.06 -2.91 -0.02 3.48 16 32 H 0.09 4.09 6.71 -2.91 -0.02 4.08 16 Total: -1.00 -73.75 265.51 2.30 -71.46 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: 0.17 Total: 36.78 kcal Atomic # 6 Polarization: -39.04 SS G_CDS: 3.16 Total: -35.87 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -1.13 Total: -103.71 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -1.95 Total: -24.43 kcal Atomic # 14 Polarization: 53.72 SS G_CDS: 2.05 Total: 55.77 kcal Total: -73.75 2.30 -71.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161158808.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.571 kcal (2) G-P(sol) polarization free energy of solvation -73.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds