Wall clock time and date at job start Sun Mar 29 2020 22:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 O 1.42904 * 109.46786 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47370 * 120.00356 * 2 1 3 6 6 C 1.36942 * 119.99873 * 299.99770 * 5 2 1 7 7 H 1.08008 * 119.99604 * 0.02562 * 6 5 2 8 8 C 1.38803 * 120.00258 * 180.02562 * 6 5 2 9 9 N 1.31617 * 120.00469 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 120.00090 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47016 * 89.99888 * 10 8 6 12 12 H 1.48498 * 109.47328 * 210.00237 * 10 8 6 13 13 H 1.48508 * 109.46729 * 330.00215 * 10 8 6 14 14 C 1.50706 * 109.47383 * 240.00345 * 2 1 3 15 15 C 1.38237 * 119.99744 * 270.00236 * 14 2 1 16 16 C 1.38235 * 119.99712 * 180.02562 * 15 14 2 17 17 C 1.38234 * 120.00220 * 359.94731 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00223 * 90.01446 * 14 2 1 20 20 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47313 * 299.99349 * 1 2 3 22 22 H 1.09000 * 109.47547 * 59.99968 * 1 2 3 23 23 H 1.08996 * 109.47399 * 300.00011 * 3 2 1 24 24 H 1.09001 * 109.47328 * 60.00432 * 3 2 1 25 25 H 0.96704 * 113.99357 * 180.02562 * 4 3 2 26 26 H 0.96996 * 120.00154 * 120.00278 * 5 2 1 27 27 H 0.96999 * 120.00382 * 179.97438 * 9 8 6 28 28 H 1.08005 * 120.00088 * 359.97438 * 15 14 2 29 29 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 32 32 H 1.07998 * 119.99975 * 0.02562 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 7 2.0183 -0.6907 1.1961 6 6 1.6875 -0.2228 2.4399 7 1 1.0663 0.6551 2.5390 8 6 2.1507 -0.8769 3.5732 9 7 1.8324 -0.4276 4.7687 10 14 3.2258 -2.3949 3.4018 11 1 4.6532 -1.9879 3.3565 12 1 3.0037 -3.2926 4.5637 13 1 2.8751 -3.1108 2.1489 14 6 2.0323 -0.7103 -1.2305 15 6 2.2627 -2.0730 -1.1963 16 6 2.7240 -2.7244 -2.3249 17 6 2.9540 -2.0135 -3.4879 18 6 2.7283 -0.6502 -3.5207 19 6 2.2631 0.0007 -2.3933 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.6766 1.9564 -0.8899 24 1 1.6766 1.9564 0.8900 25 1 3.8622 2.3260 -0.0002 26 1 2.5760 -1.4793 1.1071 27 1 2.1557 -0.8848 5.5607 28 1 2.0830 -2.6284 -0.2876 29 1 2.9044 -3.7889 -2.2980 30 1 3.3140 -2.5227 -4.3697 31 1 2.9121 -0.0940 -4.4280 32 1 2.0837 1.0653 -2.4199 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161158881.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:59 Heat of formation + Delta-G solvation = -3.721173 kcal Electronic energy + Delta-G solvation = -15333.692226 eV Core-core repulsion = 12873.896093 eV Total energy + Delta-G solvation = -2459.796133 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.43445 -36.79589 -34.73992 -32.31303 -30.72031 -29.97646 -28.70727 -25.47979 -24.02246 -22.17473 -21.75659 -18.84195 -18.09552 -16.69610 -16.32989 -15.21266 -14.74681 -14.23936 -13.99597 -13.60475 -13.33905 -12.98591 -12.69138 -12.30923 -11.96626 -11.66342 -11.56843 -11.42316 -10.99541 -10.85558 -10.48697 -10.29589 -9.89055 -9.51502 -9.26067 -8.91700 -8.58805 -8.32932 -7.22588 -5.73532 -3.07629 1.72009 1.73110 3.40682 3.46037 3.49417 4.13850 4.63627 4.84343 5.09870 5.17503 5.24515 5.36785 5.42798 5.53288 5.75300 5.86041 5.91122 6.00966 6.22999 6.28776 6.31153 6.34717 6.45610 6.57891 6.78423 6.81685 6.94161 7.06756 7.33805 7.99033 8.28487 8.45676 9.23026 9.96393 10.17048 11.44720 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030322 B = 0.010583 C = 0.009073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.190744 B = 2645.227216 C = 3085.221734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.241 3.759 3 C 0.073 3.927 4 O -0.553 6.553 5 N -0.733 5.733 6 C -0.234 4.234 7 H 0.091 0.909 8 C 0.005 3.995 9 N -0.935 5.935 10 Si 0.883 3.117 11 H -0.284 1.284 12 H -0.292 1.292 13 H -0.279 1.279 14 C -0.052 4.052 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.135 4.135 18 C -0.124 4.124 19 C -0.109 4.109 20 H 0.058 0.942 21 H 0.067 0.933 22 H 0.043 0.957 23 H 0.029 0.971 24 H 0.052 0.948 25 H 0.362 0.638 26 H 0.364 0.636 27 H 0.258 0.742 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 0.491 -15.426 15.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.150 3.850 3 C -0.007 4.007 4 O -0.356 6.356 5 N -0.376 5.376 6 C -0.363 4.363 7 H 0.108 0.892 8 C -0.190 4.190 9 N -0.584 5.584 10 Si 0.713 3.287 11 H -0.211 1.211 12 H -0.219 1.219 13 H -0.205 1.205 14 C -0.052 4.052 15 C -0.133 4.133 16 C -0.140 4.140 17 C -0.153 4.153 18 C -0.143 4.143 19 C -0.128 4.128 20 H 0.077 0.923 21 H 0.086 0.914 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.206 0.794 26 H 0.199 0.801 27 H 0.068 0.932 28 H 0.142 0.858 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.228 -0.054 -15.203 15.205 hybrid contribution 0.922 -0.444 0.095 1.028 sum 1.151 -0.499 -15.108 15.160 Atomic orbital electron populations 1.22145 0.95333 1.02172 1.00923 1.18489 0.92321 0.89563 0.84661 1.22745 0.81364 0.98356 0.98280 1.86610 1.19617 1.31782 1.97568 1.42793 1.61261 1.32346 1.01226 1.18941 1.26008 1.09994 0.81399 0.89171 1.24591 1.00408 0.98939 0.95071 1.69690 1.49956 1.41992 0.96715 0.86587 0.81407 0.84060 0.76621 1.21068 1.21873 1.20502 1.20038 0.96586 0.93681 0.94912 1.21123 0.99165 0.94607 0.98401 1.21085 1.00094 0.99584 0.93276 1.21007 1.01908 0.94511 0.97866 1.21023 1.00517 0.94639 0.98075 1.20978 0.99652 0.99576 0.92556 0.92290 0.91390 0.93826 0.95320 0.92988 0.79378 0.80083 0.93150 0.85808 0.86582 0.86791 0.86674 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.42 37.15 0.31 -2.34 16 2 C 0.24 4.78 0.76 -132.97 -0.10 4.68 16 3 C 0.07 1.33 5.17 37.16 0.19 1.52 16 4 O -0.55 -10.43 12.91 -35.23 -0.45 -10.88 16 5 N -0.73 -17.68 4.56 -48.31 -0.22 -17.90 16 6 C -0.23 -6.52 9.15 -15.06 -0.14 -6.65 16 7 H 0.09 2.65 6.92 -52.48 -0.36 2.28 16 8 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 9 N -0.94 -29.43 13.97 55.49 0.78 -28.65 16 10 Si 0.88 22.77 27.74 -169.99 -4.71 18.05 16 11 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 13 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 14 C -0.05 -0.94 4.51 -104.62 -0.47 -1.41 16 15 C -0.11 -2.06 8.96 -39.58 -0.35 -2.41 16 16 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 17 C -0.13 -1.84 10.05 -39.58 -0.40 -2.23 16 18 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 19 C -0.11 -1.70 8.92 -39.58 -0.35 -2.06 16 20 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 21 H 0.07 1.32 7.27 -51.93 -0.38 0.94 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.03 0.43 6.51 -51.93 -0.34 0.09 16 24 H 0.05 1.03 7.27 -51.93 -0.38 0.65 16 25 H 0.36 5.00 9.12 45.56 0.42 5.42 16 26 H 0.36 8.93 3.72 -40.82 -0.15 8.78 16 27 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 28 H 0.12 2.37 6.71 -52.48 -0.35 2.01 16 29 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.12 1.66 6.17 -52.49 -0.32 1.34 16 LS Contribution 263.90 15.07 3.98 3.98 Total: -1.00 -32.63 263.90 -5.99 -38.62 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -3.15 Total: 11.99 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -2.20 Total: -15.21 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.55 Total: -46.55 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.45 Total: -10.88 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.63 -5.99 -38.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161158881.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.903 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds