Wall clock time and date at job start Sun Mar 29 2020 22:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 O 1.42904 * 109.46786 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47370 * 120.00356 * 2 1 3 6 6 C 1.36942 * 119.99873 * 299.99770 * 5 2 1 7 7 H 1.08008 * 119.99604 * 0.02562 * 6 5 2 8 8 C 1.38803 * 120.00258 * 180.02562 * 6 5 2 9 9 N 1.31617 * 120.00469 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 120.00090 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47016 * 89.99888 * 10 8 6 12 12 H 1.48498 * 109.47328 * 210.00237 * 10 8 6 13 13 H 1.48508 * 109.46729 * 330.00215 * 10 8 6 14 14 C 1.50706 * 109.47383 * 240.00345 * 2 1 3 15 15 C 1.38237 * 119.99744 * 270.00236 * 14 2 1 16 16 C 1.38235 * 119.99712 * 180.02562 * 15 14 2 17 17 C 1.38234 * 120.00220 * 359.94731 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00223 * 90.01446 * 14 2 1 20 20 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47313 * 299.99349 * 1 2 3 22 22 H 1.09000 * 109.47547 * 59.99968 * 1 2 3 23 23 H 1.08996 * 109.47399 * 300.00011 * 3 2 1 24 24 H 1.09001 * 109.47328 * 60.00432 * 3 2 1 25 25 H 0.96704 * 113.99357 * 180.02562 * 4 3 2 26 26 H 0.96996 * 120.00154 * 120.00278 * 5 2 1 27 27 H 0.96999 * 120.00382 * 179.97438 * 9 8 6 28 28 H 1.08005 * 120.00088 * 359.97438 * 15 14 2 29 29 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 32 32 H 1.07998 * 119.99975 * 0.02562 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 7 2.0183 -0.6907 1.1961 6 6 1.6875 -0.2228 2.4399 7 1 1.0663 0.6551 2.5390 8 6 2.1507 -0.8769 3.5732 9 7 1.8324 -0.4276 4.7687 10 14 3.2258 -2.3949 3.4018 11 1 4.6532 -1.9879 3.3565 12 1 3.0037 -3.2926 4.5637 13 1 2.8751 -3.1108 2.1489 14 6 2.0323 -0.7103 -1.2305 15 6 2.2627 -2.0730 -1.1963 16 6 2.7240 -2.7244 -2.3249 17 6 2.9540 -2.0135 -3.4879 18 6 2.7283 -0.6502 -3.5207 19 6 2.2631 0.0007 -2.3933 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.6766 1.9564 -0.8899 24 1 1.6766 1.9564 0.8900 25 1 3.8622 2.3260 -0.0002 26 1 2.5760 -1.4793 1.1071 27 1 2.1557 -0.8848 5.5607 28 1 2.0830 -2.6284 -0.2876 29 1 2.9044 -3.7889 -2.2980 30 1 3.3140 -2.5227 -4.3697 31 1 2.9121 -0.0940 -4.4280 32 1 2.0837 1.0653 -2.4199 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161158881.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:59 Heat of formation + Delta-G solvation = -27.562674 kcal Electronic energy + Delta-G solvation = -15334.726071 eV Core-core repulsion = 12873.896093 eV Total energy + Delta-G solvation = -2460.829978 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74107 -38.20110 -36.36210 -34.25832 -32.11929 -31.50838 -30.16635 -26.94440 -25.89345 -23.53500 -23.04583 -20.33883 -20.04482 -18.11596 -17.79419 -16.79779 -16.20922 -15.89609 -15.31534 -15.11973 -14.85721 -14.64596 -13.98464 -13.97088 -13.57692 -13.11585 -13.05379 -12.96942 -12.76624 -12.51354 -12.11523 -11.88919 -11.65971 -11.33747 -11.00212 -10.70039 -9.73980 -9.58976 -9.24067 -7.99766 -5.30110 0.54908 0.57803 1.33207 1.37416 1.42531 2.48406 2.96487 3.31804 3.43206 3.61842 3.83219 4.09581 4.21055 4.32272 4.41305 4.52129 4.68188 4.74006 4.77374 4.84707 4.95603 5.03319 5.18462 5.25427 5.40509 5.65508 5.67619 5.73140 5.86494 6.19384 6.26081 7.05293 7.11072 7.86581 8.05654 9.21752 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030322 B = 0.010583 C = 0.009073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.190744 B = 2645.227216 C = 3085.221734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.227 3.773 3 C 0.078 3.922 4 O -0.574 6.574 5 N -0.739 5.739 6 C -0.205 4.205 7 H 0.066 0.934 8 C -0.065 4.065 9 N -0.984 5.984 10 Si 0.943 3.057 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.259 1.259 14 C -0.073 4.073 15 C -0.143 4.143 16 C -0.127 4.127 17 C -0.129 4.129 18 C -0.119 4.119 19 C -0.114 4.114 20 H 0.050 0.950 21 H 0.045 0.955 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.026 0.974 25 H 0.383 0.617 26 H 0.362 0.638 27 H 0.255 0.745 28 H 0.100 0.900 29 H 0.135 0.865 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 0.193 -18.965 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.137 3.863 3 C -0.002 4.002 4 O -0.380 6.380 5 N -0.382 5.382 6 C -0.336 4.336 7 H 0.084 0.916 8 C -0.255 4.255 9 N -0.636 5.636 10 Si 0.772 3.228 11 H -0.214 1.214 12 H -0.222 1.222 13 H -0.184 1.184 14 C -0.073 4.073 15 C -0.161 4.161 16 C -0.145 4.145 17 C -0.147 4.147 18 C -0.136 4.136 19 C -0.132 4.132 20 H 0.069 0.931 21 H 0.064 0.936 22 H 0.097 0.903 23 H 0.088 0.912 24 H 0.044 0.956 25 H 0.230 0.770 26 H 0.196 0.804 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.153 0.847 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.031 -0.334 -18.811 18.843 hybrid contribution 0.646 -0.274 1.033 1.248 sum 1.677 -0.608 -17.779 17.868 Atomic orbital electron populations 1.22055 0.94471 1.01834 1.01526 1.18838 0.92989 0.90391 0.84048 1.22626 0.81348 0.97201 0.98975 1.86549 1.19829 1.33997 1.97609 1.42877 1.61297 1.32656 1.01376 1.18922 1.23499 1.08158 0.83045 0.91639 1.25292 1.02929 1.02403 0.94919 1.69846 1.52387 1.43924 0.97444 0.85590 0.79229 0.80853 0.77152 1.21394 1.22154 1.18375 1.19913 0.98618 0.93872 0.94922 1.21093 1.01391 0.94859 0.98790 1.21344 0.99413 1.00744 0.92957 1.21446 1.00249 0.94705 0.98251 1.21458 0.98629 0.94964 0.98584 1.21176 0.99532 1.00335 0.92199 0.93118 0.93600 0.90293 0.91155 0.95602 0.76969 0.80366 0.93623 0.88231 0.84715 0.83323 0.83138 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 8.42 71.98 0.61 -4.41 16 2 C 0.23 8.83 0.76 2.86 0.00 8.84 16 3 C 0.08 2.75 5.17 71.98 0.37 3.13 16 4 O -0.57 -20.76 12.91 -148.98 -1.92 -22.68 16 5 N -0.74 -35.92 4.56 -306.74 -1.40 -37.32 16 6 C -0.21 -11.76 9.15 84.03 0.77 -10.99 16 7 H 0.07 4.02 6.92 -2.91 -0.02 4.00 16 8 C -0.06 -3.91 5.50 84.86 0.47 -3.44 16 9 N -0.98 -64.17 13.97 21.65 0.30 -63.87 16 10 Si 0.94 48.07 27.74 68.60 1.90 49.98 16 11 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 12 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16 13 H -0.26 -12.14 6.52 99.48 0.65 -11.50 16 14 C -0.07 -2.50 4.51 -19.86 -0.09 -2.59 16 15 C -0.14 -4.94 8.96 22.27 0.20 -4.74 16 16 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 17 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 18 C -0.12 -2.68 10.05 22.27 0.22 -2.45 16 19 C -0.11 -3.14 8.92 22.27 0.20 -2.94 16 20 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.04 1.81 7.27 -2.39 -0.02 1.79 16 22 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.07 1.89 6.51 -2.39 -0.02 1.88 16 24 H 0.03 1.03 7.27 -2.39 -0.02 1.01 16 25 H 0.38 9.89 9.12 -74.05 -0.68 9.21 16 26 H 0.36 17.77 3.72 -92.71 -0.35 17.42 16 27 H 0.25 15.95 8.31 -92.71 -0.77 15.18 16 28 H 0.10 3.83 6.71 -2.91 -0.02 3.81 16 29 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 30 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.13 3.17 6.17 -2.91 -0.02 3.15 16 Total: -1.00 -72.16 263.90 2.13 -70.02 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.05 Total: 29.41 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 3.20 Total: -25.53 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -1.10 Total: -101.19 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -1.92 Total: -22.68 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.90 Total: 49.98 kcal Total: -72.16 2.13 -70.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161158881.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.460 kcal (2) G-P(sol) polarization free energy of solvation -72.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds