Wall clock time and date at job start Sun Mar 29 2020 21:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99633 * 2 1 4 4 H 1.48500 * 109.46912 * 239.99694 * 3 2 1 5 5 H 1.48492 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46668 * 120.00442 * 3 2 1 7 7 C 1.37873 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99595 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00534 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47332 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46656 * 179.97438 * 12 11 10 14 14 C 1.38264 * 119.94710 * 269.72785 * 13 12 11 15 15 C 1.38141 * 120.05663 * 179.72910 * 14 13 12 16 16 C 1.38744 * 119.94145 * 0.56624 * 15 14 13 17 17 O 1.35899 * 120.05593 * 179.68397 * 16 15 14 18 18 C 1.38733 * 119.88894 * 359.70842 * 16 15 14 19 19 C 1.38148 * 119.94226 * 359.97438 * 18 16 15 20 20 H 0.97001 * 120.00114 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47766 * 59.99216 * 9 7 2 22 22 H 1.09008 * 109.46651 * 299.99865 * 9 7 2 23 23 H 1.09002 * 109.47142 * 59.99917 * 10 9 7 24 24 H 1.09000 * 109.46991 * 299.99661 * 10 9 7 25 25 H 1.00896 * 111.00309 * 56.04370 * 11 10 9 26 26 H 1.08990 * 109.47358 * 299.99539 * 12 11 10 27 27 H 1.09004 * 109.47457 * 60.00221 * 12 11 10 28 28 H 1.07997 * 119.97123 * 359.97438 * 14 13 12 29 29 H 1.07995 * 120.03365 * 180.24888 * 15 14 13 30 30 H 0.96699 * 113.99641 * 270.02281 * 17 16 15 31 31 H 1.07996 * 120.02849 * 179.97438 * 18 16 15 32 32 H 1.08000 * 119.97048 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5108 -4.9343 -0.0033 12 6 2.4353 -6.0759 -0.0049 13 6 1.6472 -7.3604 -0.0047 14 6 1.2924 -7.9524 1.1933 15 6 0.5652 -9.1269 1.1962 16 6 0.2010 -9.7187 -0.0047 17 8 -0.5089 -10.8776 -0.0046 18 6 0.5631 -9.1258 -1.2055 19 6 1.2847 -7.9478 -1.2028 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5564 -0.8918 22 1 0.6241 -2.5574 0.8881 23 1 2.8720 -3.6051 0.8873 24 1 2.8719 -3.6035 -0.8927 25 1 0.8741 -4.9839 -0.7844 26 1 3.0626 -6.0342 -0.8952 27 1 3.0640 -6.0356 0.8847 28 1 1.5806 -7.4940 2.1278 29 1 0.2848 -9.5868 2.1322 30 1 0.0390 -11.6744 -0.0053 31 1 0.2812 -9.5848 -2.1416 32 1 1.5672 -7.4860 -2.1374 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162946562.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:52 Heat of formation + Delta-G solvation = -31.556093 kcal Electronic energy + Delta-G solvation = -13868.144524 eV Core-core repulsion = 11407.141378 eV Total energy + Delta-G solvation = -2461.003146 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.79482 -37.30148 -35.51627 -33.00141 -31.02576 -30.91689 -28.54084 -25.17771 -23.29643 -22.82707 -21.20902 -20.51610 -18.50459 -16.33424 -16.12800 -15.84347 -15.35013 -14.76094 -14.42751 -14.09546 -13.77308 -13.48418 -12.79219 -12.54224 -12.27244 -11.98092 -11.74878 -11.27829 -11.01645 -10.90187 -10.55108 -10.52490 -9.99684 -9.41504 -9.17952 -9.01758 -8.54503 -8.34382 -7.82660 -5.98878 -4.01917 1.17379 1.32920 3.33885 3.38306 3.40479 3.56831 4.10653 4.44993 4.78511 4.84339 4.92924 5.09616 5.36435 5.36837 5.38531 5.69618 5.71039 5.89700 6.00061 6.24245 6.33293 6.36426 6.37401 6.65220 6.77272 6.96759 7.44820 7.52434 7.72480 7.81393 7.94130 8.08641 8.43474 9.05192 9.61796 11.12492 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.071740 B = 0.004099 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.202102 B = 6829.707653 C = 6901.778379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.686 5.686 12 C 0.095 3.905 13 C -0.080 4.080 14 C -0.082 4.082 15 C -0.146 4.146 16 C 0.094 3.906 17 O -0.501 6.501 18 C -0.146 4.146 19 C -0.100 4.100 20 H 0.261 0.739 21 H 0.014 0.986 22 H 0.026 0.974 23 H 0.059 0.941 24 H 0.016 0.984 25 H 0.338 0.662 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.386 0.614 31 H 0.125 0.875 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.533 -19.258 -0.717 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.063 4.063 11 N -0.317 5.317 12 C -0.034 4.034 13 C -0.081 4.081 14 C -0.101 4.101 15 C -0.165 4.165 16 C 0.050 3.950 17 O -0.311 6.311 18 C -0.164 4.164 19 C -0.118 4.118 20 H 0.071 0.929 21 H 0.032 0.968 22 H 0.044 0.956 23 H 0.078 0.922 24 H 0.034 0.966 25 H 0.155 0.845 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.241 0.759 31 H 0.143 0.857 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.818 -18.747 -0.029 18.957 hybrid contribution 1.076 0.628 -0.941 1.561 sum 3.895 -18.119 -0.969 18.558 Atomic orbital electron populations 1.69967 1.06042 1.26728 1.50478 1.25007 0.94847 0.99223 0.95277 0.86636 0.79551 0.83088 0.78585 1.20290 1.21260 1.20213 1.21135 0.92944 0.91013 1.51110 0.92790 1.19069 0.94026 0.90365 0.97791 1.22196 0.97037 0.88314 0.98721 1.60659 1.19440 1.01621 1.49995 1.20898 0.93644 0.87912 1.00994 1.19990 0.98862 0.96229 0.92973 1.20968 0.96709 0.94208 0.98206 1.21410 0.99692 0.97678 0.97683 1.18477 0.95128 0.88902 0.92484 1.84840 1.35253 1.14423 1.96576 1.21348 0.99827 0.97580 0.97686 1.20979 0.97830 0.95058 0.97958 0.92910 0.96796 0.95596 0.92240 0.96566 0.84500 0.94873 0.90459 0.85319 0.85588 0.75879 0.85670 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.66 5.23 -27.89 -0.15 0.51 16 10 C 0.07 1.38 5.62 -3.82 -0.02 1.36 16 11 N -0.69 -12.43 6.49 -115.05 -0.75 -13.18 16 12 C 0.09 1.37 5.81 -4.97 -0.03 1.34 16 13 C -0.08 -1.06 5.39 -104.60 -0.56 -1.63 16 14 C -0.08 -1.04 9.69 -39.61 -0.38 -1.42 16 15 C -0.15 -1.71 9.99 -39.43 -0.39 -2.10 16 16 C 0.09 1.10 6.71 -39.21 -0.26 0.84 16 17 O -0.50 -5.10 13.50 -19.42 -0.26 -5.36 16 18 C -0.15 -1.67 9.99 -39.43 -0.39 -2.07 16 19 C -0.10 -1.21 9.69 -39.60 -0.38 -1.59 16 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.03 0.74 8.14 -51.92 -0.42 0.31 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.34 6.03 8.72 -39.29 -0.34 5.68 16 26 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 28 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.39 1.90 9.06 45.56 0.41 2.32 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 281.64 15.07 4.24 4.24 Total: -1.00 -32.09 281.64 -7.73 -39.83 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -3.69 Total: 2.64 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -2.99 Total: -18.47 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.01 Total: -39.63 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.26 Total: -5.36 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.09 -7.73 -39.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162946562.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.271 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds