Wall clock time and date at job start Sun Mar 29 2020 21:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99633 * 2 1 4 4 H 1.48500 * 109.46912 * 239.99694 * 3 2 1 5 5 H 1.48492 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46668 * 120.00442 * 3 2 1 7 7 C 1.37873 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99595 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00534 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47332 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46656 * 179.97438 * 12 11 10 14 14 C 1.38264 * 119.94710 * 269.72785 * 13 12 11 15 15 C 1.38141 * 120.05663 * 179.72910 * 14 13 12 16 16 C 1.38744 * 119.94145 * 0.56624 * 15 14 13 17 17 O 1.35899 * 120.05593 * 179.68397 * 16 15 14 18 18 C 1.38733 * 119.88894 * 359.70842 * 16 15 14 19 19 C 1.38148 * 119.94226 * 359.97438 * 18 16 15 20 20 H 0.97001 * 120.00114 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47766 * 59.99216 * 9 7 2 22 22 H 1.09008 * 109.46651 * 299.99865 * 9 7 2 23 23 H 1.09002 * 109.47142 * 59.99917 * 10 9 7 24 24 H 1.09000 * 109.46991 * 299.99661 * 10 9 7 25 25 H 1.00896 * 111.00309 * 56.04370 * 11 10 9 26 26 H 1.08990 * 109.47358 * 299.99539 * 12 11 10 27 27 H 1.09004 * 109.47457 * 60.00221 * 12 11 10 28 28 H 1.07997 * 119.97123 * 359.97438 * 14 13 12 29 29 H 1.07995 * 120.03365 * 180.24888 * 15 14 13 30 30 H 0.96699 * 113.99641 * 270.02281 * 17 16 15 31 31 H 1.07996 * 120.02849 * 179.97438 * 18 16 15 32 32 H 1.08000 * 119.97048 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5108 -4.9343 -0.0033 12 6 2.4353 -6.0759 -0.0049 13 6 1.6472 -7.3604 -0.0047 14 6 1.2924 -7.9524 1.1933 15 6 0.5652 -9.1269 1.1962 16 6 0.2010 -9.7187 -0.0047 17 8 -0.5089 -10.8776 -0.0046 18 6 0.5631 -9.1258 -1.2055 19 6 1.2847 -7.9478 -1.2028 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5564 -0.8918 22 1 0.6241 -2.5574 0.8881 23 1 2.8720 -3.6051 0.8873 24 1 2.8719 -3.6035 -0.8927 25 1 0.8741 -4.9839 -0.7844 26 1 3.0626 -6.0342 -0.8952 27 1 3.0640 -6.0356 0.8847 28 1 1.5806 -7.4940 2.1278 29 1 0.2848 -9.5868 2.1322 30 1 0.0390 -11.6744 -0.0053 31 1 0.2812 -9.5848 -2.1416 32 1 1.5672 -7.4860 -2.1374 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162946562.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:52 Heat of formation + Delta-G solvation = -54.625573 kcal Electronic energy + Delta-G solvation = -13869.144892 eV Core-core repulsion = 11407.141378 eV Total energy + Delta-G solvation = -2462.003514 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68991 -38.31118 -36.91996 -34.99864 -32.41511 -31.92117 -30.11294 -26.77422 -24.88239 -23.73593 -22.48936 -22.11358 -19.32673 -18.50703 -17.30139 -16.80318 -16.48526 -16.23109 -15.99624 -15.51130 -14.94570 -14.41045 -14.30497 -14.14071 -13.78784 -13.10846 -13.02838 -12.87963 -12.70473 -12.45821 -12.24474 -11.91472 -11.40927 -11.35876 -11.27474 -10.55851 -9.92233 -9.54495 -9.23218 -8.19828 -6.31933 0.25530 0.42414 1.41043 1.44550 1.52531 2.40985 2.65607 3.13485 3.31368 3.54248 3.88233 3.95178 4.09757 4.36210 4.45670 4.51493 4.60381 4.71504 4.77263 4.97170 5.06627 5.10747 5.34132 5.44245 5.46940 5.66622 5.68942 5.77814 5.91329 6.12602 6.26055 6.49777 6.85499 6.88643 7.37560 8.92204 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.071740 B = 0.004099 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.202102 B = 6829.707653 C = 6901.778379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.084 3.916 11 N -0.694 5.694 12 C 0.099 3.901 13 C -0.098 4.098 14 C -0.091 4.091 15 C -0.154 4.154 16 C 0.096 3.904 17 O -0.510 6.510 18 C -0.152 4.152 19 C -0.103 4.103 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.007 1.007 23 H 0.061 0.939 24 H 0.023 0.977 25 H 0.338 0.662 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.132 0.868 29 H 0.142 0.858 30 H 0.410 0.590 31 H 0.143 0.857 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.565 -19.894 -0.960 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.081 0.919 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.325 5.325 12 C -0.029 4.029 13 C -0.098 4.098 14 C -0.110 4.110 15 C -0.172 4.172 16 C 0.052 3.948 17 O -0.323 6.323 18 C -0.170 4.170 19 C -0.121 4.121 20 H 0.073 0.927 21 H 0.009 0.991 22 H 0.011 0.989 23 H 0.080 0.920 24 H 0.041 0.959 25 H 0.155 0.845 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.150 0.850 29 H 0.159 0.841 30 H 0.269 0.731 31 H 0.161 0.839 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.873 -19.426 -0.272 19.810 hybrid contribution 0.692 0.690 -0.863 1.304 sum 4.565 -18.736 -1.135 19.318 Atomic orbital electron populations 1.70113 1.07914 1.27898 1.51361 1.26008 0.95768 1.03490 0.94581 0.85448 0.78205 0.77816 0.79253 1.19026 1.20880 1.19084 1.21598 0.93623 0.92183 1.51047 0.91918 1.18932 0.94374 0.92429 0.94998 1.21807 0.95574 0.88028 0.99080 1.60561 1.20152 1.01561 1.50256 1.20895 0.93273 0.87033 1.01704 1.19923 1.00055 0.96066 0.93797 1.21102 0.96987 0.94694 0.98226 1.21602 0.99543 0.97445 0.98599 1.18608 0.94328 0.89391 0.92510 1.84776 1.36024 1.15025 1.96500 1.21573 0.99556 0.97361 0.98535 1.21148 0.97669 0.95298 0.98035 0.92739 0.99150 0.98872 0.92026 0.95902 0.84502 0.93745 0.90030 0.85006 0.84060 0.73117 0.83908 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.55 -31.46 9.11 25.60 0.23 -31.22 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.64 5.23 29.85 0.16 1.79 16 10 C 0.08 3.53 5.62 86.30 0.49 4.02 16 11 N -0.69 -25.04 6.49 -517.91 -3.36 -28.40 16 12 C 0.10 2.78 5.81 85.56 0.50 3.28 16 13 C -0.10 -2.50 5.39 -19.85 -0.11 -2.61 16 14 C -0.09 -2.22 9.69 22.25 0.22 -2.00 16 15 C -0.15 -3.36 9.99 22.37 0.22 -3.14 16 16 C 0.10 2.06 6.71 22.51 0.15 2.21 16 17 O -0.51 -9.19 13.50 -92.42 -1.25 -10.44 16 18 C -0.15 -3.21 9.99 22.37 0.22 -2.98 16 19 C -0.10 -2.36 9.69 22.26 0.22 -2.14 16 20 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 21 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 22 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 23 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 24 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.34 12.10 8.72 -89.70 -0.78 11.32 16 26 H 0.04 1.15 8.08 -2.39 -0.02 1.13 16 27 H 0.08 2.19 8.08 -2.38 -0.02 2.18 16 28 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 29 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 30 H 0.41 2.98 9.06 -74.06 -0.67 2.31 16 31 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -68.32 281.64 0.12 -68.19 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -0.34 Total: 14.00 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 2.76 Total: -32.37 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -3.08 Total: -85.84 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -1.25 Total: -10.44 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -68.32 0.12 -68.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162946562.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.568 kcal (2) G-P(sol) polarization free energy of solvation -68.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds