Wall clock time and date at job start Sun Mar 29 2020 21:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99742 * 2 1 4 4 H 1.48495 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47184 * 300.00169 * 3 2 1 6 6 H 1.48498 * 109.46849 * 60.00021 * 3 2 1 7 7 C 1.37873 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47115 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47153 * 179.97438 * 10 9 7 12 12 C 1.46904 * 111.00210 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47175 * 180.02562 * 12 11 10 14 14 C 1.38158 * 120.02768 * 260.00115 * 13 12 11 15 15 C 1.38250 * 120.05410 * 180.02562 * 14 13 12 16 16 C 1.38281 * 120.11168 * 359.97438 * 15 14 13 17 17 C 1.38125 * 120.05855 * 359.97438 * 16 15 14 18 18 C 1.38711 * 120.02445 * 79.96176 * 13 12 11 19 19 O 1.35901 * 120.05828 * 0.03985 * 18 13 12 20 20 H 0.97004 * 120.00091 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46988 * 59.99781 * 9 7 2 22 22 H 1.08997 * 109.46963 * 299.99963 * 9 7 2 23 23 H 1.09004 * 109.46991 * 60.00248 * 10 9 7 24 24 H 1.08997 * 109.47462 * 300.00613 * 10 9 7 25 25 H 1.00904 * 110.99739 * 56.05326 * 11 10 9 26 26 H 1.09000 * 109.46686 * 60.00498 * 12 11 10 27 27 H 1.09002 * 109.47344 * 300.00553 * 12 11 10 28 28 H 1.08004 * 119.97750 * 359.97438 * 14 13 12 29 29 H 1.07999 * 119.94133 * 179.97438 * 15 14 13 30 30 H 1.07997 * 119.97275 * 180.02562 * 16 15 14 31 31 H 1.07994 * 120.03307 * 179.73079 * 17 16 15 32 32 H 0.96701 * 113.99785 * 269.95941 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5110 -4.9342 0.0012 12 6 2.4355 -6.0758 0.0018 13 6 1.6475 -7.3604 0.0018 14 6 1.4625 -8.0580 1.1798 15 6 0.7402 -9.2368 1.1804 16 6 0.2006 -9.7203 0.0026 17 6 0.3818 -9.0260 -1.1777 18 6 1.1066 -7.8428 -1.1809 19 8 1.2872 -7.1584 -2.3410 20 1 -0.4850 0.8401 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6242 -2.5567 0.8903 23 1 2.8720 -3.6042 0.8906 24 1 2.8721 -3.6042 -0.8893 25 1 0.8744 -4.9846 -0.7801 26 1 3.0633 -6.0344 0.8918 27 1 3.0636 -6.0353 -0.8881 28 1 1.8833 -7.6827 2.1010 29 1 0.5971 -9.7809 2.1022 30 1 -0.3636 -10.6411 0.0056 31 1 -0.0361 -9.4063 -2.0981 32 1 0.5978 -6.5054 -2.5238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164246925.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:54 Heat of formation + Delta-G solvation = -31.261968 kcal Electronic energy + Delta-G solvation = -14180.417380 eV Core-core repulsion = 11719.426988 eV Total energy + Delta-G solvation = -2460.990392 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.88822 -36.61294 -35.92425 -33.15075 -31.52278 -29.92243 -28.77995 -25.38520 -23.34730 -22.60256 -21.22533 -20.50814 -18.23600 -16.32704 -16.31453 -15.88432 -15.24271 -14.76618 -14.43269 -14.18081 -13.70167 -13.46969 -12.66861 -12.28751 -12.12226 -12.04503 -11.84097 -11.45089 -11.04805 -10.94446 -10.54620 -10.35247 -10.01354 -9.43900 -9.17498 -8.86762 -8.59162 -8.36020 -7.83040 -6.00455 -4.03040 1.22108 1.32119 3.31176 3.38542 3.42730 3.58492 4.25675 4.44284 4.75579 4.85524 4.95758 5.08300 5.30493 5.35746 5.45111 5.67904 5.77760 5.91269 6.03884 6.28270 6.34388 6.38740 6.43420 6.58822 6.79532 6.95963 7.43191 7.63378 7.71324 7.80026 7.92182 8.06729 8.42585 9.04366 9.60988 11.11032 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057557 B = 0.004731 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.353420 B = 5916.636531 C = 6013.192402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.683 5.683 12 C 0.096 3.904 13 C -0.096 4.096 14 C -0.088 4.088 15 C -0.131 4.131 16 C -0.111 4.111 17 C -0.148 4.148 18 C 0.108 3.892 19 O -0.499 6.499 20 H 0.260 0.740 21 H 0.013 0.987 22 H 0.025 0.975 23 H 0.059 0.941 24 H 0.017 0.983 25 H 0.331 0.669 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.855 -17.458 -0.583 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.314 5.314 12 C -0.033 4.033 13 C -0.097 4.097 14 C -0.107 4.107 15 C -0.149 4.149 16 C -0.130 4.130 17 C -0.166 4.166 18 C 0.063 3.937 19 O -0.310 6.310 20 H 0.070 0.930 21 H 0.032 0.968 22 H 0.044 0.956 23 H 0.078 0.922 24 H 0.036 0.964 25 H 0.148 0.852 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.148 -17.671 0.050 17.709 hybrid contribution 0.274 1.267 -0.923 1.591 sum 1.422 -16.404 -0.872 16.489 Atomic orbital electron populations 1.69984 1.06049 1.26498 1.50763 1.25002 0.94837 0.99239 0.95272 0.86528 0.80091 0.83743 0.77586 1.19749 1.21018 1.20967 1.21214 0.93050 0.90972 1.50758 0.92667 1.19074 0.94014 0.90431 0.97704 1.22199 0.97053 0.88211 0.98851 1.60713 1.19557 1.01770 1.49331 1.20809 0.93773 0.87473 1.01213 1.20277 0.99873 0.97068 0.92462 1.21001 0.97947 0.94402 0.97325 1.21152 0.98861 0.96716 0.98185 1.20979 0.99898 0.99766 0.92319 1.21373 1.00096 0.96310 0.98827 1.18381 0.97485 0.92730 0.85093 1.84776 1.52579 1.55680 1.37924 0.93038 0.96850 0.95631 0.92212 0.96447 0.85208 0.90542 0.94151 0.85488 0.85931 0.85940 0.85687 0.75229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 10 C 0.06 1.38 5.62 -3.83 -0.02 1.36 16 11 N -0.68 -12.35 6.49 -115.06 -0.75 -13.09 16 12 C 0.10 1.49 5.48 -4.97 -0.03 1.46 16 13 C -0.10 -1.35 5.41 -104.48 -0.56 -1.91 16 14 C -0.09 -1.10 9.67 -39.61 -0.38 -1.49 16 15 C -0.13 -1.42 10.04 -39.56 -0.40 -1.81 16 16 C -0.11 -1.16 10.04 -39.61 -0.40 -1.56 16 17 C -0.15 -1.71 9.99 -39.43 -0.39 -2.10 16 18 C 0.11 1.45 6.67 -39.21 -0.26 1.18 16 19 O -0.50 -6.49 12.69 -19.43 -0.25 -6.74 16 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.33 5.68 8.41 -39.29 -0.33 5.35 16 26 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 27 H 0.04 0.64 7.85 -51.93 -0.41 0.24 16 28 H 0.13 1.44 8.04 -52.48 -0.42 1.02 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.39 3.79 8.80 45.56 0.40 4.19 16 LS Contribution 279.94 15.07 4.22 4.22 Total: -1.00 -31.70 279.94 -7.74 -39.44 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -3.68 Total: 3.71 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -3.00 Total: -17.97 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: -0.01 Total: -39.36 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.25 Total: -6.74 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.70 -7.74 -39.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164246925.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.176 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds