Wall clock time and date at job start Sun Mar 29 2020 21:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99742 * 2 1 4 4 H 1.48495 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47184 * 300.00169 * 3 2 1 6 6 H 1.48498 * 109.46849 * 60.00021 * 3 2 1 7 7 C 1.37873 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47115 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47153 * 179.97438 * 10 9 7 12 12 C 1.46904 * 111.00210 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47175 * 180.02562 * 12 11 10 14 14 C 1.38158 * 120.02768 * 260.00115 * 13 12 11 15 15 C 1.38250 * 120.05410 * 180.02562 * 14 13 12 16 16 C 1.38281 * 120.11168 * 359.97438 * 15 14 13 17 17 C 1.38125 * 120.05855 * 359.97438 * 16 15 14 18 18 C 1.38711 * 120.02445 * 79.96176 * 13 12 11 19 19 O 1.35901 * 120.05828 * 0.03985 * 18 13 12 20 20 H 0.97004 * 120.00091 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46988 * 59.99781 * 9 7 2 22 22 H 1.08997 * 109.46963 * 299.99963 * 9 7 2 23 23 H 1.09004 * 109.46991 * 60.00248 * 10 9 7 24 24 H 1.08997 * 109.47462 * 300.00613 * 10 9 7 25 25 H 1.00904 * 110.99739 * 56.05326 * 11 10 9 26 26 H 1.09000 * 109.46686 * 60.00498 * 12 11 10 27 27 H 1.09002 * 109.47344 * 300.00553 * 12 11 10 28 28 H 1.08004 * 119.97750 * 359.97438 * 14 13 12 29 29 H 1.07999 * 119.94133 * 179.97438 * 15 14 13 30 30 H 1.07997 * 119.97275 * 180.02562 * 16 15 14 31 31 H 1.07994 * 120.03307 * 179.73079 * 17 16 15 32 32 H 0.96701 * 113.99785 * 269.95941 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5110 -4.9342 0.0012 12 6 2.4355 -6.0758 0.0018 13 6 1.6475 -7.3604 0.0018 14 6 1.4625 -8.0580 1.1798 15 6 0.7402 -9.2368 1.1804 16 6 0.2006 -9.7203 0.0026 17 6 0.3818 -9.0260 -1.1777 18 6 1.1066 -7.8428 -1.1809 19 8 1.2872 -7.1584 -2.3410 20 1 -0.4850 0.8401 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6242 -2.5567 0.8903 23 1 2.8720 -3.6042 0.8906 24 1 2.8721 -3.6042 -0.8893 25 1 0.8744 -4.9846 -0.7801 26 1 3.0633 -6.0344 0.8918 27 1 3.0636 -6.0353 -0.8881 28 1 1.8833 -7.6827 2.1010 29 1 0.5971 -9.7809 2.1022 30 1 -0.3636 -10.6411 0.0056 31 1 -0.0361 -9.4063 -2.0981 32 1 0.5978 -6.5054 -2.5238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164246925.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:54 Heat of formation + Delta-G solvation = -53.877201 kcal Electronic energy + Delta-G solvation = -14181.398050 eV Core-core repulsion = 11719.426988 eV Total energy + Delta-G solvation = -2461.971062 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.84278 -37.54982 -37.45659 -35.13162 -32.94466 -31.01233 -30.29945 -26.98829 -25.01224 -23.52100 -22.54317 -22.11075 -19.18528 -18.50684 -17.40956 -16.90050 -16.57217 -16.24255 -15.94233 -15.55249 -14.94551 -14.67935 -14.25842 -13.98392 -13.49320 -13.11102 -12.96929 -12.89178 -12.82556 -12.50865 -12.32009 -11.93306 -11.49262 -11.34818 -11.19288 -10.57663 -9.83480 -9.55855 -9.28699 -8.21085 -6.32618 0.30538 0.41132 1.40716 1.41102 1.54541 2.40328 2.67594 3.12607 3.34168 3.48203 3.85868 3.94320 4.18493 4.35953 4.48137 4.54045 4.59487 4.65761 4.76871 4.97021 5.03932 5.08549 5.42116 5.44900 5.55328 5.62270 5.65370 5.76188 5.94305 6.09194 6.22723 6.45309 6.77556 6.84450 7.36911 8.91294 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057557 B = 0.004731 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.353420 B = 5916.636531 C = 6013.192402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.083 3.917 11 N -0.686 5.686 12 C 0.104 3.896 13 C -0.120 4.120 14 C -0.100 4.100 15 C -0.131 4.131 16 C -0.105 4.105 17 C -0.154 4.154 18 C 0.092 3.908 19 O -0.512 6.512 20 H 0.264 0.736 21 H -0.007 1.007 22 H -0.005 1.005 23 H 0.060 0.940 24 H 0.019 0.981 25 H 0.335 0.665 26 H 0.080 0.920 27 H 0.034 0.966 28 H 0.133 0.867 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.142 0.858 32 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 -18.394 -0.348 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.046 4.046 11 N -0.316 5.316 12 C -0.025 4.025 13 C -0.121 4.121 14 C -0.118 4.118 15 C -0.149 4.149 16 C -0.123 4.123 17 C -0.173 4.173 18 C 0.047 3.953 19 O -0.324 6.324 20 H 0.073 0.927 21 H 0.011 0.989 22 H 0.013 0.987 23 H 0.078 0.922 24 H 0.037 0.963 25 H 0.152 0.848 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.151 0.849 29 H 0.168 0.832 30 H 0.172 0.828 31 H 0.159 0.841 32 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 1.567 -18.625 0.282 18.693 hybrid contribution 0.084 1.462 -0.992 1.769 sum 1.651 -17.163 -0.709 17.257 Atomic orbital electron populations 1.70112 1.07819 1.27778 1.51459 1.25964 0.95759 1.03349 0.94553 0.85365 0.79014 0.78609 0.77838 1.18623 1.20265 1.20307 1.21637 0.93550 0.92235 1.50915 0.92176 1.18917 0.94260 0.92173 0.95153 1.21819 0.95704 0.88169 0.98904 1.60619 1.19948 1.01367 1.49702 1.20741 0.93462 0.87259 1.01009 1.20229 1.01362 0.96902 0.93642 1.21209 0.98401 0.95199 0.97012 1.21503 0.97737 0.96018 0.99615 1.21402 0.98985 1.00393 0.91567 1.21637 0.99727 0.95700 1.00197 1.18606 0.98187 0.93612 0.84887 1.84738 1.53471 1.56176 1.37998 0.92703 0.98887 0.98662 0.92161 0.96283 0.84765 0.90177 0.94797 0.84890 0.83154 0.82776 0.84063 0.74034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.75 5.23 29.85 0.16 1.91 16 10 C 0.08 3.56 5.62 86.30 0.49 4.05 16 11 N -0.69 -25.05 6.49 -517.93 -3.36 -28.42 16 12 C 0.10 3.21 5.48 85.56 0.47 3.67 16 13 C -0.12 -3.32 5.41 -19.77 -0.11 -3.43 16 14 C -0.10 -2.37 9.67 22.25 0.22 -2.15 16 15 C -0.13 -2.48 10.04 22.28 0.22 -2.26 16 16 C -0.11 -1.89 10.04 22.25 0.22 -1.66 16 17 C -0.15 -3.28 9.99 22.37 0.22 -3.06 16 18 C 0.09 2.39 6.67 22.51 0.15 2.54 16 19 O -0.51 -13.22 12.69 -92.44 -1.17 -14.39 16 20 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 21 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 22 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 23 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 24 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.34 11.74 8.41 -89.69 -0.75 10.98 16 26 H 0.08 2.37 8.01 -2.39 -0.02 2.35 16 27 H 0.03 1.08 7.85 -2.39 -0.02 1.07 16 28 H 0.13 2.88 8.04 -2.91 -0.02 2.85 16 29 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 32 H 0.40 7.87 8.80 -74.06 -0.65 7.22 16 Total: -1.00 -67.71 279.94 0.22 -67.49 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.29 Total: 16.65 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 2.73 Total: -31.02 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -3.08 Total: -85.22 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -1.17 Total: -14.39 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -67.71 0.22 -67.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164246925.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.609 kcal (2) G-P(sol) polarization free energy of solvation -67.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds