Wall clock time and date at job start Sun Mar 29 2020 22:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36929 * 120.00221 * 2 1 4 4 H 1.08000 * 120.00004 * 203.03906 * 3 2 1 5 5 C 1.38811 * 120.00017 * 23.05068 * 3 2 1 6 6 N 1.31616 * 120.00174 * 13.04962 * 5 3 2 7 7 Si 1.86800 * 120.00240 * 193.04853 * 5 3 2 8 8 H 1.48503 * 109.47168 * 89.99642 * 7 5 3 9 9 H 1.48494 * 109.47390 * 209.99920 * 7 5 3 10 10 H 1.48504 * 109.46760 * 329.99893 * 7 5 3 11 11 C 1.46501 * 119.99489 * 180.02562 * 2 1 3 12 12 C 1.50703 * 109.47403 * 90.00173 * 11 2 1 13 13 C 1.38229 * 120.00201 * 89.99607 * 12 11 2 14 14 C 1.38237 * 120.00206 * 179.97438 * 13 12 11 15 15 C 1.38240 * 119.99831 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.00180 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.47291 * 90.00082 * 16 15 14 18 18 C 1.38236 * 119.99857 * 0.26126 * 15 14 13 19 19 C 1.38235 * 119.99891 * 359.49295 * 18 15 14 20 20 H 1.08999 * 109.46603 * 275.12342 * 1 2 3 21 21 H 1.08998 * 109.46909 * 35.12011 * 1 2 3 22 22 H 1.08996 * 109.47173 * 155.12169 * 1 2 3 23 23 H 0.96996 * 120.00663 * 180.02562 * 6 5 3 24 24 H 1.08997 * 109.47498 * 329.99588 * 11 2 1 25 25 H 1.09000 * 109.46940 * 209.99582 * 11 2 1 26 26 H 1.07998 * 120.00360 * 0.02562 * 13 12 11 27 27 H 1.07994 * 120.00323 * 180.02562 * 14 13 12 28 28 H 1.09008 * 109.47326 * 330.00029 * 16 15 14 29 29 H 1.08997 * 109.47516 * 210.00559 * 16 15 14 30 30 H 0.96706 * 114.00241 * 179.97438 * 17 16 15 31 31 H 1.07997 * 120.00288 * 179.72536 * 18 15 14 32 32 H 1.07998 * 119.99996 * 180.25528 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1651 1.2231 -0.3660 5 6 1.5388 2.3400 0.4707 6 7 0.4132 2.2595 1.1480 7 14 2.3143 4.0075 0.1428 8 1 1.7945 4.5521 -1.1373 9 1 1.9756 4.9372 1.2501 10 1 3.7892 3.8588 0.0549 11 6 2.1974 -1.2688 -0.0006 12 6 2.4486 -1.7033 -1.4216 13 6 3.6006 -1.3040 -2.0730 14 6 3.8312 -1.7030 -3.3763 15 6 2.9096 -2.5008 -4.0283 16 6 3.1607 -2.9353 -5.4492 17 8 3.8751 -4.1729 -5.4498 18 6 1.7548 -2.8952 -3.3788 19 6 1.5266 -2.5004 -2.0738 20 1 -0.3632 0.0918 1.0236 21 1 -0.3633 0.8406 -0.5912 22 1 -0.3633 -0.9323 -0.4323 23 1 -0.0139 3.0660 1.4767 24 1 1.6084 -2.0286 0.5130 25 1 3.1499 -1.1387 0.5133 26 1 4.3208 -0.6811 -1.5636 27 1 4.7314 -1.3914 -3.8852 28 1 3.7499 -2.1755 -5.9628 29 1 2.2084 -3.0653 -5.9632 30 1 4.0714 -4.5134 -6.3333 31 1 1.0327 -3.5148 -3.8896 32 1 0.6264 -2.8119 -1.5650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166284371.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:29 Heat of formation + Delta-G solvation = -4.909250 kcal Electronic energy + Delta-G solvation = -14622.171178 eV Core-core repulsion = 12162.323526 eV Total energy + Delta-G solvation = -2459.847652 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.07960 -36.74257 -35.31962 -32.21276 -30.49088 -30.40657 -27.14379 -25.81669 -24.15845 -22.21783 -21.30759 -20.01508 -17.46372 -16.71054 -15.81730 -15.28174 -14.95860 -14.71755 -13.74230 -13.53953 -13.38670 -13.05378 -12.88014 -12.50164 -11.96275 -11.40567 -11.21415 -10.87835 -10.79676 -10.67156 -10.45997 -10.21680 -10.08224 -9.92779 -9.87741 -8.55361 -8.42332 -8.13958 -6.73061 -5.69877 -3.17058 1.75574 1.90780 3.39753 3.45927 3.47082 4.07258 4.52613 4.62873 5.05171 5.11678 5.38709 5.43272 5.45486 5.47687 5.69166 5.77631 6.01330 6.03358 6.24011 6.46699 6.58559 6.68735 6.76626 6.92804 6.95499 7.29873 7.39553 7.49561 7.56540 7.74460 7.83144 8.41408 9.25430 9.88179 10.37306 11.34741 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039793 B = 0.006850 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.466677 B = 4086.472855 C = 4475.568945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.593 5.593 3 C -0.253 4.253 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.180 3.820 12 C -0.069 4.069 13 C -0.108 4.108 14 C -0.103 4.103 15 C -0.117 4.117 16 C 0.122 3.878 17 O -0.569 6.569 18 C -0.104 4.104 19 C -0.118 4.118 20 H 0.033 0.967 21 H 0.039 0.961 22 H -0.002 1.002 23 H 0.252 0.748 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.120 0.880 27 H 0.113 0.887 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.374 0.626 31 H 0.113 0.887 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 -9.646 -10.448 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.382 4.382 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.052 3.948 12 C -0.072 4.072 13 C -0.127 4.127 14 C -0.121 4.121 15 C -0.117 4.117 16 C 0.045 3.955 17 O -0.374 6.374 18 C -0.122 4.122 19 C -0.137 4.137 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.016 0.984 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.138 0.862 27 H 0.131 0.869 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.220 0.780 31 H 0.131 0.869 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.659 -9.393 -9.677 13.973 hybrid contribution 0.289 1.042 -0.913 1.415 sum 3.948 -8.351 -10.590 14.053 Atomic orbital electron populations 1.20810 0.82521 0.95436 0.99430 1.43862 1.01787 1.00199 1.85653 1.19181 0.98247 0.85568 1.35251 0.91453 1.24999 0.97916 0.98452 0.98224 1.70068 1.19559 1.27145 1.38506 0.86259 0.78767 0.84181 0.77377 1.21556 1.21729 1.20464 1.19814 0.96952 0.88855 0.89140 1.21267 0.92765 0.93056 1.00155 1.21037 0.97862 0.99403 0.94360 1.20934 0.98165 0.98023 0.95001 1.19386 0.96132 1.00892 0.95297 1.20950 0.95043 0.85488 0.94011 1.86608 1.78246 1.39287 1.33251 1.20889 0.96810 0.99557 0.94946 1.21005 0.99159 0.99003 0.94516 0.94919 0.94205 0.98356 0.93775 0.93513 0.92425 0.86194 0.86875 0.93180 0.93215 0.77992 0.86940 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 8.98 59.85 0.54 4.63 16 2 N -0.59 -15.19 2.91 -182.50 -0.53 -15.72 16 3 C -0.25 -7.03 9.65 -15.06 -0.15 -7.17 16 4 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 5 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 6 N -0.91 -26.80 10.72 55.49 0.59 -26.20 16 7 Si 0.90 22.16 29.57 -169.99 -5.03 17.13 16 8 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 C 0.18 3.81 5.77 -5.19 -0.03 3.78 16 12 C -0.07 -1.34 5.46 -104.62 -0.57 -1.91 16 13 C -0.11 -1.99 9.70 -39.58 -0.38 -2.38 16 14 C -0.10 -1.70 9.70 -39.58 -0.38 -2.09 16 15 C -0.12 -1.84 5.51 -104.63 -0.58 -2.42 16 16 C 0.12 1.48 7.17 36.00 0.26 1.74 16 17 O -0.57 -6.86 13.64 -35.23 -0.48 -7.34 16 18 C -0.10 -1.67 9.70 -39.58 -0.38 -2.05 16 19 C -0.12 -2.09 9.70 -39.58 -0.38 -2.47 16 20 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 21 H 0.04 1.08 7.34 -51.93 -0.38 0.70 16 22 H 0.00 -0.05 8.03 -51.93 -0.42 -0.46 16 23 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 25 H 0.06 1.20 7.98 -51.93 -0.41 0.79 16 26 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.05 0.53 8.09 -51.92 -0.42 0.11 16 29 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.37 2.44 9.12 45.56 0.42 2.86 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 277.01 15.07 4.17 4.17 Total: -1.00 -32.03 277.01 -7.10 -39.13 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -3.67 Total: -0.79 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.15 Total: -10.37 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.06 Total: -41.93 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.48 Total: -7.34 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.03 -7.10 -39.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166284371.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.219 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds