Wall clock time and date at job start Sun Mar 29 2020 22:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36929 * 120.00221 * 2 1 4 4 H 1.08000 * 120.00004 * 203.03906 * 3 2 1 5 5 C 1.38811 * 120.00017 * 23.05068 * 3 2 1 6 6 N 1.31616 * 120.00174 * 13.04962 * 5 3 2 7 7 Si 1.86800 * 120.00240 * 193.04853 * 5 3 2 8 8 H 1.48503 * 109.47168 * 89.99642 * 7 5 3 9 9 H 1.48494 * 109.47390 * 209.99920 * 7 5 3 10 10 H 1.48504 * 109.46760 * 329.99893 * 7 5 3 11 11 C 1.46501 * 119.99489 * 180.02562 * 2 1 3 12 12 C 1.50703 * 109.47403 * 90.00173 * 11 2 1 13 13 C 1.38229 * 120.00201 * 89.99607 * 12 11 2 14 14 C 1.38237 * 120.00206 * 179.97438 * 13 12 11 15 15 C 1.38240 * 119.99831 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.00180 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.47291 * 90.00082 * 16 15 14 18 18 C 1.38236 * 119.99857 * 0.26126 * 15 14 13 19 19 C 1.38235 * 119.99891 * 359.49295 * 18 15 14 20 20 H 1.08999 * 109.46603 * 275.12342 * 1 2 3 21 21 H 1.08998 * 109.46909 * 35.12011 * 1 2 3 22 22 H 1.08996 * 109.47173 * 155.12169 * 1 2 3 23 23 H 0.96996 * 120.00663 * 180.02562 * 6 5 3 24 24 H 1.08997 * 109.47498 * 329.99588 * 11 2 1 25 25 H 1.09000 * 109.46940 * 209.99582 * 11 2 1 26 26 H 1.07998 * 120.00360 * 0.02562 * 13 12 11 27 27 H 1.07994 * 120.00323 * 180.02562 * 14 13 12 28 28 H 1.09008 * 109.47326 * 330.00029 * 16 15 14 29 29 H 1.08997 * 109.47516 * 210.00559 * 16 15 14 30 30 H 0.96706 * 114.00241 * 179.97438 * 17 16 15 31 31 H 1.07997 * 120.00288 * 179.72536 * 18 15 14 32 32 H 1.07998 * 119.99996 * 180.25528 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1651 1.2231 -0.3660 5 6 1.5388 2.3400 0.4707 6 7 0.4132 2.2595 1.1480 7 14 2.3143 4.0075 0.1428 8 1 1.7945 4.5521 -1.1373 9 1 1.9756 4.9372 1.2501 10 1 3.7892 3.8588 0.0549 11 6 2.1974 -1.2688 -0.0006 12 6 2.4486 -1.7033 -1.4216 13 6 3.6006 -1.3040 -2.0730 14 6 3.8312 -1.7030 -3.3763 15 6 2.9096 -2.5008 -4.0283 16 6 3.1607 -2.9353 -5.4492 17 8 3.8751 -4.1729 -5.4498 18 6 1.7548 -2.8952 -3.3788 19 6 1.5266 -2.5004 -2.0738 20 1 -0.3632 0.0918 1.0236 21 1 -0.3633 0.8406 -0.5912 22 1 -0.3633 -0.9323 -0.4323 23 1 -0.0139 3.0660 1.4767 24 1 1.6084 -2.0286 0.5130 25 1 3.1499 -1.1387 0.5133 26 1 4.3208 -0.6811 -1.5636 27 1 4.7314 -1.3914 -3.8852 28 1 3.7499 -2.1755 -5.9628 29 1 2.2084 -3.0653 -5.9632 30 1 4.0714 -4.5134 -6.3333 31 1 1.0327 -3.5148 -3.8896 32 1 0.6264 -2.8119 -1.5650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166284371.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:29 Heat of formation + Delta-G solvation = -26.148814 kcal Electronic energy + Delta-G solvation = -14623.092195 eV Core-core repulsion = 12162.323526 eV Total energy + Delta-G solvation = -2460.768669 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37615 -37.89915 -36.98685 -33.91604 -32.14657 -31.77313 -28.63249 -27.86876 -25.59897 -23.54582 -23.05848 -21.45743 -18.73997 -18.31424 -17.12499 -16.91949 -16.49821 -16.09809 -15.47076 -15.14142 -14.69935 -14.57909 -14.19962 -13.99794 -13.56235 -13.07720 -12.82649 -12.71201 -12.56696 -12.38763 -12.01311 -11.95616 -11.78663 -11.71471 -10.93079 -10.65640 -9.73785 -9.52359 -8.78537 -7.82401 -5.32163 0.44040 0.58738 1.45155 1.46549 1.55233 2.49599 2.84141 3.30504 3.64613 3.87338 3.94476 4.10890 4.20101 4.27210 4.30956 4.58302 4.64140 4.67499 4.81419 4.88219 4.96040 5.19127 5.25265 5.30535 5.55549 5.64122 5.68978 5.69826 5.88677 6.18642 6.32159 6.96384 7.14433 7.84979 8.29682 9.20492 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039793 B = 0.006850 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.466677 B = 4086.472855 C = 4475.568945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.610 5.610 3 C -0.258 4.258 4 H 0.069 0.931 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.967 3.033 8 H -0.288 1.288 9 H -0.293 1.293 10 H -0.268 1.268 11 C 0.181 3.819 12 C -0.092 4.092 13 C -0.125 4.125 14 C -0.109 4.109 15 C -0.119 4.119 16 C 0.124 3.876 17 O -0.588 6.588 18 C -0.107 4.107 19 C -0.127 4.127 20 H 0.008 0.992 21 H 0.011 0.989 22 H 0.030 0.970 23 H 0.248 0.752 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.114 0.886 27 H 0.135 0.865 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.398 0.602 31 H 0.140 0.860 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 -10.515 -12.537 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.332 5.332 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.248 4.248 6 N -0.586 5.586 7 Si 0.795 3.205 8 H -0.215 1.215 9 H -0.220 1.220 10 H -0.192 1.192 11 C 0.055 3.945 12 C -0.095 4.095 13 C -0.144 4.144 14 C -0.127 4.127 15 C -0.119 4.119 16 C 0.047 3.953 17 O -0.398 6.398 18 C -0.124 4.124 19 C -0.145 4.145 20 H 0.026 0.974 21 H 0.030 0.970 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.132 0.868 27 H 0.152 0.848 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.249 0.751 31 H 0.158 0.842 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.416 -10.305 -11.799 16.277 hybrid contribution 0.112 1.172 -0.340 1.225 sum 4.528 -9.134 -12.139 15.852 Atomic orbital electron populations 1.20536 0.82721 0.95789 0.97633 1.44078 1.02008 1.01199 1.85960 1.19482 0.98412 0.86700 1.34242 0.91347 1.25766 0.98700 1.01772 0.98567 1.70227 1.20960 1.27569 1.39875 0.85264 0.78493 0.79917 0.76794 1.21514 1.21959 1.19217 1.19878 0.96350 0.87394 0.90870 1.21004 0.94245 0.95205 0.99027 1.21125 0.97769 0.99946 0.95538 1.21210 0.99266 0.97915 0.94297 1.19917 0.95360 0.99507 0.97110 1.20952 0.96594 0.86121 0.91622 1.86528 1.78293 1.39163 1.35778 1.21232 0.97554 0.99325 0.94335 1.21168 0.99061 0.98829 0.95479 0.97371 0.97001 0.95138 0.94280 0.92271 0.92959 0.86840 0.84757 0.91484 0.91147 0.75131 0.84228 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.08 8.98 127.77 1.15 10.23 16 2 N -0.61 -31.53 2.91 -731.32 -2.12 -33.65 16 3 C -0.26 -14.49 9.65 84.03 0.81 -13.68 16 4 H 0.07 3.74 7.86 -2.91 -0.02 3.71 16 5 C -0.05 -3.05 5.10 84.86 0.43 -2.61 16 6 N -0.94 -56.67 10.72 21.65 0.23 -56.44 16 7 Si 0.97 45.93 29.57 68.60 2.03 47.96 16 8 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 9 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 C 0.18 7.69 5.77 85.63 0.49 8.19 16 12 C -0.09 -3.52 5.46 -19.87 -0.11 -3.63 16 13 C -0.13 -4.54 9.70 22.27 0.22 -4.32 16 14 C -0.11 -3.38 9.70 22.27 0.22 -3.17 16 15 C -0.12 -3.39 5.51 -19.87 -0.11 -3.50 16 16 C 0.12 2.52 7.17 71.23 0.51 3.03 16 17 O -0.59 -12.01 13.64 -148.98 -2.03 -14.05 16 18 C -0.11 -3.13 9.70 22.27 0.22 -2.92 16 19 C -0.13 -4.29 9.70 22.27 0.22 -4.07 16 20 H 0.01 0.44 7.34 -2.39 -0.02 0.43 16 21 H 0.01 0.63 7.34 -2.39 -0.02 0.61 16 22 H 0.03 1.32 8.03 -2.39 -0.02 1.30 16 23 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.06 2.31 8.02 -2.39 -0.02 2.29 16 25 H 0.05 2.22 7.98 -2.39 -0.02 2.20 16 26 H 0.11 4.12 8.06 -2.91 -0.02 4.10 16 27 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 28 H 0.07 1.14 8.09 -2.38 -0.02 1.12 16 29 H 0.07 1.15 8.08 -2.39 -0.02 1.14 16 30 H 0.40 3.66 9.12 -74.05 -0.68 2.99 16 31 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 32 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -68.37 277.01 2.57 -65.79 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 0.43 Total: 6.83 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 4.04 Total: -16.44 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -1.89 Total: -90.09 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -2.03 Total: -14.05 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -68.37 2.57 -65.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166284371.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.644 kcal (2) G-P(sol) polarization free energy of solvation -68.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds