Wall clock time and date at job start Sun Mar 29 2020 21:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47191 * 179.97438 * 9 7 2 11 11 C 1.46895 * 111.00014 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.67964 * 324.48410 * 11 10 9 13 13 C 1.53402 * 109.68050 * 203.92946 * 11 10 9 14 14 C 1.53183 * 109.39780 * 190.69180 * 13 11 10 15 15 C 1.53334 * 109.51248 * 70.01522 * 14 13 11 16 16 C 1.50923 * 108.42548 * 309.91343 * 15 14 13 17 17 O 1.33836 * 127.79970 * 196.81058 * 16 15 14 18 18 C 1.34519 * 109.41364 * 179.90359 * 17 16 15 19 19 C 1.34766 * 108.48805 * 0.04132 * 18 17 16 20 20 C 1.34888 * 123.89767 * 16.77861 * 16 15 14 21 21 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 23 23 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 24 24 H 1.00907 * 110.99961 * 56.04296 * 10 9 7 25 25 H 1.09005 * 109.48065 * 310.69568 * 13 11 10 26 26 H 1.08997 * 109.48216 * 70.72702 * 13 11 10 27 27 H 1.08998 * 109.49065 * 309.98660 * 14 13 11 28 28 H 1.09003 * 109.43714 * 190.00892 * 14 13 11 29 29 H 1.09000 * 109.66930 * 190.18111 * 15 14 13 30 30 H 1.09004 * 109.67262 * 69.65120 * 15 14 13 31 31 H 1.08003 * 125.75830 * 180.02562 * 18 17 16 32 32 H 1.08008 * 126.67991 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5055 -4.9070 0.0011 12 1 0.5964 -4.8313 0.5977 13 6 2.4200 -5.9903 0.5870 14 6 1.7973 -7.3684 0.3430 15 6 1.8630 -7.7026 -1.1521 16 6 1.3120 -6.5309 -1.9275 17 8 0.9012 -6.5103 -3.2011 18 6 0.4779 -5.2725 -3.5143 19 6 0.6184 -4.4854 -2.4295 20 6 1.1546 -5.2945 -1.4116 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6248 -2.5571 -0.8896 24 1 2.8407 -3.5486 0.7819 25 1 3.3964 -5.9416 0.1049 26 1 2.5352 -5.8282 1.6587 27 1 0.7569 -7.3601 0.6679 28 1 2.3481 -8.1206 0.9078 29 1 1.2655 -8.5912 -1.3560 30 1 2.8982 -7.8812 -1.4430 31 1 0.0909 -4.9617 -4.4736 32 1 0.3677 -3.4374 -2.3559 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169193461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:35 Heat of formation + Delta-G solvation = 1.449092 kcal Electronic energy + Delta-G solvation = -15002.299218 eV Core-core repulsion = 12542.727284 eV Total energy + Delta-G solvation = -2459.571934 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.28479 -37.52746 -34.64693 -32.69964 -31.80933 -29.23278 -28.20103 -25.32014 -22.84082 -22.25117 -21.41173 -20.86788 -18.56023 -16.82245 -16.68972 -15.92962 -14.97380 -14.37536 -14.13038 -13.94679 -13.67448 -13.56622 -12.68736 -12.38605 -12.18304 -12.00255 -11.77255 -11.44567 -10.92661 -10.81826 -10.59239 -10.57095 -10.26863 -10.03809 -9.15989 -8.60294 -8.40326 -7.90574 -7.40566 -6.37099 -4.05654 2.10858 3.11222 3.28948 3.44801 3.47456 3.65924 4.53360 4.81055 4.84803 4.93272 5.14957 5.33704 5.39341 5.48399 5.51106 5.62250 5.69148 5.84579 5.90079 6.02274 6.04318 6.37888 6.44005 6.54306 6.58128 6.91504 7.06982 7.23031 7.56280 7.80756 8.17436 8.48155 8.58988 8.87766 9.65681 11.02523 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039367 B = 0.007259 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.091466 B = 3856.456355 C = 4312.751680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 1.073 2.927 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.595 4.595 8 H 0.055 0.945 9 C 0.181 3.819 10 N -0.673 5.673 11 C 0.149 3.851 12 H 0.043 0.957 13 C -0.123 4.123 14 C -0.111 4.111 15 C -0.029 4.029 16 C -0.038 4.038 17 O -0.179 6.179 18 C -0.068 4.068 19 C -0.176 4.176 20 C -0.142 4.142 21 H 0.266 0.734 22 H -0.026 1.026 23 H 0.026 0.974 24 H 0.333 0.667 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.199 0.801 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.522 -14.119 -1.626 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.901 3.099 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.633 4.633 8 H 0.074 0.926 9 C 0.054 3.946 10 N -0.304 5.304 11 C 0.038 3.962 12 H 0.061 0.939 13 C -0.160 4.160 14 C -0.150 4.150 15 C -0.066 4.066 16 C -0.089 4.089 17 O -0.076 6.076 18 C -0.134 4.134 19 C -0.195 4.195 20 C -0.144 4.144 21 H 0.077 0.923 22 H -0.009 1.009 23 H 0.044 0.956 24 H 0.150 0.850 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.215 0.785 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.416 -12.689 -2.486 13.154 hybrid contribution -0.242 -1.333 0.792 1.569 sum 2.174 -14.021 -1.694 14.290 Atomic orbital electron populations 1.70800 1.06863 1.30383 1.46992 1.25854 0.96493 1.02715 0.93870 0.83487 0.74788 0.75088 0.76545 1.20824 1.21478 1.21392 1.22016 0.94818 0.91310 1.55176 0.92645 1.19813 0.91291 0.88820 0.94649 1.60535 1.20638 1.00235 1.48958 1.19908 0.95299 0.90813 0.90159 0.93922 1.21827 0.99843 0.93728 1.00641 1.21554 1.01879 0.97380 0.94143 1.20090 1.00596 0.92919 0.92966 1.22160 1.06004 0.97648 0.83052 1.83817 1.63811 1.32429 1.27528 1.23993 1.06705 0.81847 1.00881 1.21817 1.03509 1.01410 0.92809 1.20170 1.03977 0.92471 0.97771 0.92334 1.00878 0.95623 0.84953 0.90727 0.91575 0.91437 0.90658 0.90427 0.90047 0.78477 0.82912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 13.65 55.43 0.76 -27.43 16 2 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 3 Si 1.07 25.64 29.90 -169.99 -5.08 20.55 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.59 -17.26 9.32 -34.44 -0.32 -17.58 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.18 4.79 4.47 -4.97 -0.02 4.77 16 10 N -0.67 -14.97 6.24 -109.04 -0.68 -15.65 16 11 C 0.15 2.79 2.85 -68.69 -0.20 2.60 16 12 H 0.04 0.85 7.82 -51.93 -0.41 0.44 16 13 C -0.12 -1.75 5.21 -26.43 -0.14 -1.89 16 14 C -0.11 -1.28 5.90 -26.46 -0.16 -1.44 16 15 C -0.03 -0.35 6.30 -27.60 -0.17 -0.52 16 16 C -0.04 -0.63 7.22 -35.39 -0.26 -0.89 16 17 O -0.18 -3.00 10.65 6.35 0.07 -2.94 16 18 C -0.07 -1.11 12.10 29.50 0.36 -0.75 16 19 C -0.18 -3.46 10.11 -39.90 -0.40 -3.86 16 20 C -0.14 -2.70 5.62 -104.93 -0.59 -3.29 16 21 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 22 H -0.03 -0.73 7.93 -51.93 -0.41 -1.15 16 23 H 0.03 0.71 5.20 -51.93 -0.27 0.44 16 24 H 0.33 7.01 8.38 -39.29 -0.33 6.68 16 25 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.20 2.43 8.06 -52.48 -0.42 2.01 16 32 H 0.15 3.30 5.98 -52.48 -0.31 2.98 16 LS Contribution 263.52 15.07 3.97 3.97 Total: -1.00 -32.50 263.52 -7.15 -39.65 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.19 Total: 4.39 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -2.00 Total: -22.54 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.08 Total: -43.08 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: 0.07 Total: -2.94 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.50 -7.15 -39.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169193461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.099 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds