Wall clock time and date at job start Sun Mar 29 2020 21:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47191 * 179.97438 * 9 7 2 11 11 C 1.46895 * 111.00014 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.67964 * 324.48410 * 11 10 9 13 13 C 1.53402 * 109.68050 * 203.92946 * 11 10 9 14 14 C 1.53183 * 109.39780 * 190.69180 * 13 11 10 15 15 C 1.53334 * 109.51248 * 70.01522 * 14 13 11 16 16 C 1.50923 * 108.42548 * 309.91343 * 15 14 13 17 17 O 1.33836 * 127.79970 * 196.81058 * 16 15 14 18 18 C 1.34519 * 109.41364 * 179.90359 * 17 16 15 19 19 C 1.34766 * 108.48805 * 0.04132 * 18 17 16 20 20 C 1.34888 * 123.89767 * 16.77861 * 16 15 14 21 21 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 23 23 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 24 24 H 1.00907 * 110.99961 * 56.04296 * 10 9 7 25 25 H 1.09005 * 109.48065 * 310.69568 * 13 11 10 26 26 H 1.08997 * 109.48216 * 70.72702 * 13 11 10 27 27 H 1.08998 * 109.49065 * 309.98660 * 14 13 11 28 28 H 1.09003 * 109.43714 * 190.00892 * 14 13 11 29 29 H 1.09000 * 109.66930 * 190.18111 * 15 14 13 30 30 H 1.09004 * 109.67262 * 69.65120 * 15 14 13 31 31 H 1.08003 * 125.75830 * 180.02562 * 18 17 16 32 32 H 1.08008 * 126.67991 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5055 -4.9070 0.0011 12 1 0.5964 -4.8313 0.5977 13 6 2.4200 -5.9903 0.5870 14 6 1.7973 -7.3684 0.3430 15 6 1.8630 -7.7026 -1.1521 16 6 1.3120 -6.5309 -1.9275 17 8 0.9012 -6.5103 -3.2011 18 6 0.4779 -5.2725 -3.5143 19 6 0.6184 -4.4854 -2.4295 20 6 1.1546 -5.2945 -1.4116 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6248 -2.5571 -0.8896 24 1 2.8407 -3.5486 0.7819 25 1 3.3964 -5.9416 0.1049 26 1 2.5352 -5.8282 1.6587 27 1 0.7569 -7.3601 0.6679 28 1 2.3481 -8.1206 0.9078 29 1 1.2655 -8.5912 -1.3560 30 1 2.8982 -7.8812 -1.4430 31 1 0.0909 -4.9617 -4.4736 32 1 0.3677 -3.4374 -2.3559 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169193461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:35 Heat of formation + Delta-G solvation = -20.989076 kcal Electronic energy + Delta-G solvation = -15003.272210 eV Core-core repulsion = 12542.727284 eV Total energy + Delta-G solvation = -2460.544926 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.63170 -38.92641 -36.36178 -34.53485 -33.37256 -30.60268 -29.66333 -27.24296 -24.54573 -23.77782 -22.85687 -22.30215 -19.83578 -19.00107 -18.03108 -17.28055 -16.43259 -15.96155 -15.67655 -15.47962 -15.42986 -14.99961 -14.21651 -13.84348 -13.75758 -13.46538 -13.17407 -13.10184 -12.76289 -12.43690 -12.00380 -11.91667 -11.79424 -11.60961 -10.76554 -10.66883 -10.59448 -9.34937 -9.16568 -8.74448 -6.44967 0.79303 1.50839 1.59971 1.64879 1.79846 2.04996 2.53461 3.10248 3.43993 3.70771 3.81499 3.83291 4.14347 4.28366 4.30899 4.35883 4.56383 4.59251 4.72939 4.86845 4.89972 4.94791 5.01051 5.14702 5.29133 5.30469 5.32585 5.58016 5.72128 5.98653 6.20187 6.35014 6.53147 6.67608 7.37311 8.64704 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039367 B = 0.007259 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.091466 B = 3856.456355 C = 4312.751680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.037 4.037 3 Si 1.124 2.876 4 H -0.282 1.282 5 H -0.266 1.266 6 H -0.271 1.271 7 C -0.612 4.612 8 H 0.055 0.945 9 C 0.195 3.805 10 N -0.674 5.674 11 C 0.145 3.855 12 H 0.021 0.979 13 C -0.116 4.116 14 C -0.105 4.105 15 C -0.029 4.029 16 C -0.024 4.024 17 O -0.176 6.176 18 C -0.046 4.046 19 C -0.223 4.223 20 C -0.184 4.184 21 H 0.251 0.749 22 H -0.053 1.053 23 H 0.007 0.993 24 H 0.338 0.662 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.237 0.763 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.063 -15.919 -1.860 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.234 4.234 3 Si 0.944 3.056 4 H -0.207 1.207 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.650 4.650 8 H 0.073 0.927 9 C 0.067 3.933 10 N -0.305 5.305 11 C 0.035 3.965 12 H 0.039 0.961 13 C -0.154 4.154 14 C -0.143 4.143 15 C -0.066 4.066 16 C -0.075 4.075 17 O -0.072 6.072 18 C -0.113 4.113 19 C -0.243 4.243 20 C -0.185 4.185 21 H 0.061 0.939 22 H -0.036 1.036 23 H 0.025 0.975 24 H 0.156 0.844 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.253 0.747 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.966 -14.534 -2.715 15.308 hybrid contribution -0.755 -0.838 0.829 1.400 sum 3.210 -15.372 -1.886 15.817 Atomic orbital electron populations 1.70933 1.07932 1.29512 1.48868 1.27518 0.96519 1.06857 0.92552 0.82854 0.74010 0.70633 0.78068 1.20703 1.19093 1.19637 1.22385 0.94985 0.92636 1.54964 0.92699 1.19489 0.91313 0.90023 0.92500 1.60429 1.20065 1.00827 1.49158 1.20038 0.95293 0.90454 0.90693 0.96145 1.21816 0.98740 0.93838 1.00980 1.21589 1.02051 0.96245 0.94375 1.20404 1.01958 0.91883 0.92328 1.22954 1.03762 0.98108 0.82651 1.83863 1.63418 1.32182 1.27722 1.24536 1.04533 0.81052 1.01162 1.21754 1.06615 1.00618 0.95278 1.20335 1.06325 0.93971 0.97917 0.93941 1.03555 0.97465 0.84408 0.90648 0.90331 0.91825 0.86580 0.87541 0.87948 0.74673 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.65 13.65 21.45 0.29 -59.36 16 2 C -0.04 -2.22 5.46 84.65 0.46 -1.76 16 3 Si 1.12 51.54 29.90 68.60 2.05 53.59 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.61 -36.58 9.32 25.60 0.24 -36.34 16 8 H 0.05 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.19 10.91 4.47 85.56 0.38 11.29 16 10 N -0.67 -31.12 6.24 -498.88 -3.11 -34.24 16 11 C 0.15 5.59 2.85 44.28 0.13 5.72 16 12 H 0.02 0.87 7.82 -2.39 -0.02 0.85 16 13 C -0.12 -3.12 5.21 30.79 0.16 -2.96 16 14 C -0.10 -2.04 5.90 30.77 0.18 -1.86 16 15 C -0.03 -0.59 6.30 30.03 0.19 -0.40 16 16 C -0.02 -0.75 7.22 24.99 0.18 -0.57 16 17 O -0.18 -5.53 10.65 -0.18 0.00 -5.54 16 18 C -0.05 -1.49 12.10 67.02 0.81 -0.68 16 19 C -0.22 -9.15 10.11 22.06 0.22 -8.93 16 20 C -0.18 -7.10 5.62 -20.07 -0.11 -7.21 16 21 H 0.25 16.39 7.22 -92.70 -0.67 15.72 16 22 H -0.05 -3.17 7.93 -2.39 -0.02 -3.19 16 23 H 0.01 0.45 5.20 -2.39 -0.01 0.43 16 24 H 0.34 14.57 8.38 -89.69 -0.75 13.82 16 25 H 0.07 2.03 8.12 -2.38 -0.02 2.01 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 28 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.24 5.37 8.06 -2.91 -0.02 5.34 16 32 H 0.12 5.62 5.98 -2.91 -0.02 5.60 16 Total: -1.00 -73.56 263.52 2.54 -71.02 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.47 Total: 18.21 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 2.84 Total: -43.69 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -2.82 Total: -93.59 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: 0.00 Total: -5.54 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 2.05 Total: 53.59 kcal Total: -73.56 2.54 -71.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169193461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.029 kcal (2) G-P(sol) polarization free energy of solvation -73.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds