Wall clock time and date at job start Sun Mar 29 2020 21:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99724 * 2 1 4 4 H 1.48495 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46989 * 300.00214 * 3 2 1 6 6 H 1.48492 * 109.46988 * 60.00067 * 3 2 1 7 7 C 1.37874 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99673 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00291 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47397 * 180.02562 * 9 7 2 11 11 C 1.46890 * 111.00114 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.71318 * 35.53602 * 11 10 9 13 13 C 1.53295 * 109.90973 * 155.86451 * 11 10 9 14 14 C 1.53121 * 109.52646 * 169.19459 * 13 11 10 15 15 C 1.53342 * 109.53116 * 290.11569 * 14 13 11 16 16 C 1.50930 * 108.42451 * 50.04959 * 15 14 13 17 17 O 1.33828 * 127.79753 * 163.18857 * 16 15 14 18 18 C 1.34520 * 109.41511 * 180.15889 * 17 16 15 19 19 C 1.34766 * 108.48685 * 359.96781 * 18 17 16 20 20 C 1.34894 * 123.90044 * 343.30454 * 16 15 14 21 21 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46779 * 59.99893 * 9 7 2 23 23 H 1.08999 * 109.47207 * 300.00710 * 9 7 2 24 24 H 1.00906 * 110.99791 * 56.04752 * 10 9 7 25 25 H 1.09002 * 109.33631 * 49.23579 * 13 11 10 26 26 H 1.08996 * 109.52728 * 289.27323 * 13 11 10 27 27 H 1.08998 * 109.46551 * 170.09279 * 14 13 11 28 28 H 1.09002 * 109.44613 * 50.12256 * 14 13 11 29 29 H 1.08995 * 109.67195 * 290.31302 * 15 14 13 30 30 H 1.09007 * 109.67039 * 169.78331 * 15 14 13 31 31 H 1.07998 * 125.75877 * 179.97438 * 18 17 16 32 32 H 1.07997 * 126.68379 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 1 0.5964 -4.8320 -0.5979 13 6 2.4132 -5.9927 -0.5905 14 6 1.7907 -7.3697 -0.3436 15 6 1.8606 -7.7033 1.1515 16 6 1.3135 -6.5305 1.9280 17 8 0.9068 -6.5088 3.2028 18 6 0.4847 -5.2706 3.5165 19 6 0.6218 -4.4845 2.4306 20 6 1.1545 -5.2945 1.4116 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.8406 -3.5486 0.7809 25 1 3.3911 -5.9448 -0.1115 26 1 2.5252 -5.8314 -1.6626 27 1 2.3386 -8.1229 -0.9098 28 1 0.7492 -7.3601 -0.6652 29 1 2.8964 -7.8830 1.4392 30 1 1.2627 -8.5911 1.3577 31 1 0.1008 -4.9591 4.4767 32 1 0.3718 -3.4364 2.3571 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169193551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:38 Heat of formation + Delta-G solvation = 3.126912 kcal Electronic energy + Delta-G solvation = -14981.144530 eV Core-core repulsion = 12521.645352 eV Total energy + Delta-G solvation = -2459.499178 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.34559 -37.43003 -34.49022 -32.59592 -31.65612 -29.26031 -28.28716 -25.73006 -22.85355 -21.86801 -21.29502 -20.86002 -18.67457 -16.99176 -16.25972 -15.85292 -14.79517 -14.66330 -14.18558 -13.96132 -13.65400 -13.15430 -12.62816 -12.42540 -12.02131 -11.92039 -11.61119 -11.23934 -11.04670 -10.83804 -10.65503 -10.50965 -10.35294 -9.80330 -9.28649 -9.10508 -8.48414 -7.99365 -7.23024 -6.01998 -4.03347 2.05942 3.02707 3.25495 3.31451 3.38801 3.44148 4.44265 4.86529 4.94147 4.99992 5.30574 5.33713 5.41136 5.46906 5.52329 5.70779 5.80552 5.97770 6.02251 6.09194 6.17970 6.42722 6.51641 6.59497 6.66256 6.96433 7.31979 7.46349 7.54935 7.81142 8.15335 8.43386 8.64607 9.06429 9.61291 11.08918 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039564 B = 0.007219 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.539679 B = 3877.506562 C = 4327.082234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.190 3.810 10 N -0.676 5.676 11 C 0.151 3.849 12 H 0.078 0.922 13 C -0.108 4.108 14 C -0.115 4.115 15 C -0.030 4.030 16 C -0.029 4.029 17 O -0.180 6.180 18 C -0.064 4.064 19 C -0.189 4.189 20 C -0.193 4.193 21 H 0.260 0.740 22 H 0.026 0.974 23 H -0.004 1.004 24 H 0.331 0.669 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.199 0.801 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 -13.769 3.285 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.063 3.937 10 N -0.305 5.305 11 C 0.040 3.960 12 H 0.096 0.904 13 C -0.146 4.146 14 C -0.153 4.153 15 C -0.067 4.067 16 C -0.080 4.080 17 O -0.077 6.077 18 C -0.130 4.130 19 C -0.208 4.208 20 C -0.196 4.196 21 H 0.070 0.930 22 H 0.044 0.956 23 H 0.013 0.987 24 H 0.148 0.852 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.215 0.785 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.968 -13.851 2.760 14.260 hybrid contribution -0.135 1.295 1.060 1.679 sum 1.834 -12.556 3.820 13.251 Atomic orbital electron populations 1.69973 1.06028 1.26604 1.51162 1.24978 0.94862 0.99294 0.95436 0.86453 0.80103 0.83458 0.77480 1.19682 1.21013 1.21136 1.21247 0.93553 0.90315 1.49988 0.92011 1.19698 0.90762 0.87224 0.96005 1.60815 1.20461 1.00650 1.48559 1.20094 0.96284 0.90990 0.88590 0.90383 1.21600 0.99073 0.92420 1.01542 1.21599 1.02032 0.98003 0.93634 1.20138 1.00495 0.92773 0.93323 1.22340 1.05180 0.97727 0.82789 1.83823 1.63677 1.32382 1.27783 1.24019 1.06349 0.81791 1.00878 1.21948 1.04115 1.01870 0.92860 1.21323 1.05379 0.93173 0.99719 0.93020 0.95629 0.98654 0.85226 0.91754 0.90922 0.90757 0.91447 0.90101 0.90505 0.78468 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.62 9.32 -34.44 -0.32 -14.94 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 4.98 5.16 -4.98 -0.03 4.96 16 10 N -0.68 -14.85 6.21 -109.09 -0.68 -15.53 16 11 C 0.15 2.81 2.82 -68.75 -0.19 2.62 16 12 H 0.08 1.55 7.82 -51.93 -0.41 1.14 16 13 C -0.11 -1.59 5.54 -26.52 -0.15 -1.74 16 14 C -0.11 -1.33 5.90 -26.49 -0.16 -1.49 16 15 C -0.03 -0.36 6.30 -27.59 -0.17 -0.54 16 16 C -0.03 -0.47 7.22 -35.38 -0.26 -0.73 16 17 O -0.18 -2.92 10.65 6.37 0.07 -2.86 16 18 C -0.06 -1.00 12.10 29.50 0.36 -0.64 16 19 C -0.19 -3.52 10.11 -39.90 -0.40 -3.92 16 20 C -0.19 -3.51 5.37 -104.93 -0.56 -4.07 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 23 H 0.00 -0.11 5.34 -51.93 -0.28 -0.39 16 24 H 0.33 7.22 8.47 -39.29 -0.33 6.89 16 25 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.20 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.16 3.25 5.97 -52.49 -0.31 2.93 16 LS Contribution 264.93 15.07 3.99 3.99 Total: -1.00 -30.88 264.93 -7.13 -38.01 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.25 Total: 4.69 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -1.98 Total: -19.00 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.06 Total: -41.65 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: 0.07 Total: -2.86 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.88 -7.13 -38.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169193551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.138 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds