Wall clock time and date at job start Sun Mar 29 2020 21:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99724 * 2 1 4 4 H 1.48495 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46989 * 300.00214 * 3 2 1 6 6 H 1.48492 * 109.46988 * 60.00067 * 3 2 1 7 7 C 1.37874 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99673 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00291 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47397 * 180.02562 * 9 7 2 11 11 C 1.46890 * 111.00114 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.71318 * 35.53602 * 11 10 9 13 13 C 1.53295 * 109.90973 * 155.86451 * 11 10 9 14 14 C 1.53121 * 109.52646 * 169.19459 * 13 11 10 15 15 C 1.53342 * 109.53116 * 290.11569 * 14 13 11 16 16 C 1.50930 * 108.42451 * 50.04959 * 15 14 13 17 17 O 1.33828 * 127.79753 * 163.18857 * 16 15 14 18 18 C 1.34520 * 109.41511 * 180.15889 * 17 16 15 19 19 C 1.34766 * 108.48685 * 359.96781 * 18 17 16 20 20 C 1.34894 * 123.90044 * 343.30454 * 16 15 14 21 21 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46779 * 59.99893 * 9 7 2 23 23 H 1.08999 * 109.47207 * 300.00710 * 9 7 2 24 24 H 1.00906 * 110.99791 * 56.04752 * 10 9 7 25 25 H 1.09002 * 109.33631 * 49.23579 * 13 11 10 26 26 H 1.08996 * 109.52728 * 289.27323 * 13 11 10 27 27 H 1.08998 * 109.46551 * 170.09279 * 14 13 11 28 28 H 1.09002 * 109.44613 * 50.12256 * 14 13 11 29 29 H 1.08995 * 109.67195 * 290.31302 * 15 14 13 30 30 H 1.09007 * 109.67039 * 169.78331 * 15 14 13 31 31 H 1.07998 * 125.75877 * 179.97438 * 18 17 16 32 32 H 1.07997 * 126.68379 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 1 0.5964 -4.8320 -0.5979 13 6 2.4132 -5.9927 -0.5905 14 6 1.7907 -7.3697 -0.3436 15 6 1.8606 -7.7033 1.1515 16 6 1.3135 -6.5305 1.9280 17 8 0.9068 -6.5088 3.2028 18 6 0.4847 -5.2706 3.5165 19 6 0.6218 -4.4845 2.4306 20 6 1.1545 -5.2945 1.4116 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.8406 -3.5486 0.7809 25 1 3.3911 -5.9448 -0.1115 26 1 2.5252 -5.8314 -1.6626 27 1 2.3386 -8.1229 -0.9098 28 1 0.7492 -7.3601 -0.6652 29 1 2.8964 -7.8830 1.4392 30 1 1.2627 -8.5911 1.3577 31 1 0.1008 -4.9591 4.4767 32 1 0.3718 -3.4364 2.3571 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169193551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:38 Heat of formation + Delta-G solvation = -17.671165 kcal Electronic energy + Delta-G solvation = -14982.046402 eV Core-core repulsion = 12521.645352 eV Total energy + Delta-G solvation = -2460.401050 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.65193 -38.81418 -36.10946 -34.46444 -33.21631 -30.64620 -29.74712 -27.58349 -24.39392 -23.34181 -22.86906 -22.24699 -19.96456 -18.61159 -18.11988 -17.14068 -16.73700 -15.88479 -15.70418 -15.37340 -15.09598 -14.76390 -14.18701 -13.78628 -13.62595 -13.30627 -13.17245 -12.93271 -12.71334 -12.67992 -12.19529 -11.83560 -11.76049 -11.55486 -11.12923 -10.73708 -10.65366 -9.36128 -8.98714 -8.23526 -6.34499 0.79116 1.38802 1.39661 1.53626 1.62212 2.05166 2.38648 3.09286 3.56889 3.77412 3.87325 3.98722 4.22169 4.25426 4.38630 4.51916 4.61867 4.67297 4.89178 4.96110 5.02352 5.11809 5.24144 5.30690 5.31816 5.41680 5.44469 5.59690 5.62034 6.01729 6.19812 6.44997 6.70891 6.87906 7.35997 8.87988 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039564 B = 0.007219 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.539679 B = 3877.506562 C = 4327.082234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.206 3.794 10 N -0.674 5.674 11 C 0.148 3.852 12 H 0.052 0.948 13 C -0.102 4.102 14 C -0.107 4.107 15 C -0.030 4.030 16 C -0.016 4.016 17 O -0.177 6.177 18 C -0.042 4.042 19 C -0.231 4.231 20 C -0.227 4.227 21 H 0.265 0.735 22 H -0.009 1.009 23 H -0.022 1.022 24 H 0.331 0.669 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.237 0.763 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 -15.343 3.857 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.078 3.922 10 N -0.302 5.302 11 C 0.038 3.962 12 H 0.071 0.929 13 C -0.140 4.140 14 C -0.145 4.145 15 C -0.067 4.067 16 C -0.067 4.067 17 O -0.073 6.073 18 C -0.109 4.109 19 C -0.250 4.250 20 C -0.230 4.230 21 H 0.073 0.927 22 H 0.009 0.991 23 H -0.005 1.005 24 H 0.148 0.852 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.131 0.869 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.253 0.747 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.287 -15.454 3.330 16.147 hybrid contribution -0.595 1.739 0.901 2.047 sum 2.692 -13.715 4.232 14.603 Atomic orbital electron populations 1.70103 1.07761 1.27867 1.51650 1.25940 0.95787 1.03305 0.94606 0.85287 0.78896 0.78319 0.77812 1.18759 1.20278 1.20226 1.21582 0.93692 0.91585 1.50466 0.92061 1.19318 0.90772 0.88632 0.93447 1.60741 1.19807 1.01162 1.48508 1.20168 0.96119 0.90526 0.89388 0.92942 1.21564 0.98377 0.92890 1.01169 1.21608 1.02076 0.96621 0.94176 1.20420 1.01979 0.91839 0.92412 1.23050 1.03061 0.98106 0.82464 1.83870 1.63332 1.32214 1.27877 1.24565 1.04161 0.80959 1.01204 1.21844 1.06996 1.01062 0.95095 1.21281 1.07705 0.94627 0.99380 0.92656 0.99088 1.00463 0.85188 0.91405 0.90875 0.86916 0.91888 0.87871 0.87703 0.74699 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.53 -31.58 9.32 25.60 0.24 -31.34 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.51 16 9 C 0.21 11.52 5.16 85.56 0.44 11.96 16 10 N -0.67 -30.97 6.21 -499.07 -3.10 -34.07 16 11 C 0.15 5.71 2.82 44.25 0.12 5.83 16 12 H 0.05 2.23 7.82 -2.39 -0.02 2.21 16 13 C -0.10 -2.87 5.54 30.73 0.17 -2.70 16 14 C -0.11 -2.15 5.90 30.75 0.18 -1.97 16 15 C -0.03 -0.60 6.30 30.04 0.19 -0.41 16 16 C -0.02 -0.47 7.22 24.99 0.18 -0.29 16 17 O -0.18 -5.34 10.65 -0.12 0.00 -5.35 16 18 C -0.04 -1.29 12.10 67.02 0.81 -0.48 16 19 C -0.23 -8.94 10.11 22.06 0.22 -8.72 16 20 C -0.23 -8.38 5.37 -20.06 -0.11 -8.49 16 21 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 22 H -0.01 -0.55 8.06 -2.39 -0.02 -0.57 16 23 H -0.02 -1.31 5.34 -2.39 -0.01 -1.32 16 24 H 0.33 15.04 8.47 -89.69 -0.76 14.28 16 25 H 0.07 1.87 8.12 -2.39 -0.02 1.85 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.24 5.02 8.06 -2.91 -0.02 5.00 16 32 H 0.12 5.62 5.97 -2.91 -0.02 5.60 16 Total: -1.00 -69.45 264.93 2.48 -66.97 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.36 Total: 18.46 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 2.91 Total: -36.05 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -2.81 Total: -91.35 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: 0.00 Total: -5.35 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.45 2.48 -66.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169193551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.297 kcal (2) G-P(sol) polarization free energy of solvation -69.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds