Wall clock time and date at job start Sun Mar 29 2020 21:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35788 * 125.71408 * 2 1 4 4 C 1.36342 * 109.01572 * 179.97438 * 3 2 1 5 5 C 1.39061 * 108.00955 * 0.02562 * 4 3 2 6 6 C 1.37837 * 125.71127 * 179.69641 * 2 1 3 7 7 C 1.40876 * 126.32068 * 0.02562 * 6 2 1 8 8 N 1.31427 * 120.00189 * 180.02562 * 7 6 2 9 9 N 1.40101 * 120.00160 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99962 * 180.02562 * 9 8 7 11 11 O 1.22114 * 120.00486 * 359.97438 * 10 9 8 12 12 C 1.39596 * 119.99653 * 180.02562 * 10 9 8 13 13 H 1.08003 * 120.00369 * 359.97438 * 12 10 9 14 14 C 1.40035 * 119.99794 * 179.97438 * 12 10 9 15 15 N 1.30708 * 120.00064 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99934 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47167 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47134 * 119.99984 * 16 14 12 19 19 H 1.48506 * 109.47094 * 240.00330 * 16 14 12 20 20 H 1.09002 * 109.47391 * 90.02180 * 1 2 3 21 21 H 1.09001 * 109.46813 * 330.02236 * 1 2 3 22 22 H 1.09004 * 109.47041 * 210.02363 * 1 2 3 23 23 H 1.08001 * 125.48809 * 359.94182 * 3 2 1 24 24 H 1.07994 * 125.99377 * 179.97438 * 4 3 2 25 25 H 1.07997 * 126.47985 * 180.02562 * 5 4 3 26 26 H 1.08003 * 120.00032 * 359.97438 * 7 6 2 27 27 H 0.97005 * 120.00060 * 0.02562 * 9 8 7 28 28 H 0.96995 * 120.00232 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2576 1.1025 0.0000 4 6 3.5636 0.7108 0.0006 5 6 3.5954 -0.6795 0.0004 6 6 2.2695 -1.1192 0.0059 7 6 1.8350 -2.4592 0.0125 8 7 2.7149 -3.4354 0.0183 9 7 2.2827 -4.7681 0.0243 10 6 3.1851 -5.7691 0.0307 11 8 4.3794 -5.5147 0.0308 12 6 2.7544 -7.0970 0.0361 13 1 1.6981 -7.3221 0.0356 14 6 3.6919 -8.1371 0.0423 15 7 4.9703 -7.8647 0.0424 16 14 3.1156 -9.9140 0.0488 17 1 1.6312 -9.9529 0.0470 18 1 3.6309 -10.6060 -1.1598 19 1 3.6266 -10.5956 1.2653 20 1 -0.3634 -0.0004 -1.0277 21 1 -0.3633 0.8902 0.5135 22 1 -0.3633 -0.8898 0.5142 23 1 1.9096 2.1249 -0.0009 24 1 4.4225 1.3653 0.0003 25 1 4.4782 -1.3015 0.0011 26 1 0.7787 -2.6844 0.0137 27 1 1.3340 -4.9703 0.0238 28 1 5.6197 -8.5851 0.0470 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211958279.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:39 Heat of formation + Delta-G solvation = 56.008215 kcal Electronic energy + Delta-G solvation = -13907.176872 eV Core-core repulsion = 11346.430456 eV Total energy + Delta-G solvation = -2560.746416 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.69785 -37.55883 -35.14887 -32.71683 -32.62340 -31.30163 -28.17459 -26.38580 -26.27174 -22.75015 -20.53778 -19.68987 -18.81484 -17.62013 -16.39625 -15.90139 -15.50105 -15.17279 -14.26142 -13.83099 -13.18100 -13.13485 -12.68976 -12.58523 -12.34826 -11.81207 -11.75517 -11.39605 -11.32020 -10.84038 -10.64118 -10.33286 -9.44350 -9.03694 -8.42338 -8.36276 -7.72406 -6.82077 -6.38312 -4.95387 1.71150 2.95709 3.00910 3.06474 3.11829 3.16778 3.73242 3.84389 4.15642 4.45702 4.73983 5.07623 5.17472 5.23460 5.36880 5.70303 5.80526 5.83919 6.14695 6.38634 6.64948 6.79810 7.21080 7.29996 7.44371 7.55311 7.88904 7.99612 8.72353 8.77376 9.33741 10.40078 10.68665 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.068105 B = 0.005239 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.032019 B = 5342.757809 C = 5738.642979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.438 5.438 3 C -0.020 4.020 4 C -0.202 4.202 5 C -0.147 4.147 6 C 0.056 3.944 7 C 0.038 3.962 8 N -0.177 5.177 9 N -0.588 5.588 10 C 0.557 3.443 11 O -0.554 6.554 12 C -0.535 4.535 13 H 0.070 0.930 14 C 0.087 3.913 15 N -0.741 5.741 16 Si 0.917 3.083 17 H -0.262 1.262 18 H -0.273 1.273 19 H -0.273 1.273 20 H 0.072 0.928 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.159 0.841 24 H 0.134 0.866 25 H 0.145 0.855 26 H 0.097 0.903 27 H 0.367 0.633 28 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.061 11.740 -0.010 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.115 5.115 3 C -0.154 4.154 4 C -0.226 4.226 5 C -0.175 4.175 6 C -0.056 4.056 7 C -0.170 4.170 8 N 0.011 4.989 9 N -0.334 5.334 10 C 0.366 3.634 11 O -0.433 6.433 12 C -0.572 4.572 13 H 0.089 0.911 14 C -0.137 4.137 15 N -0.369 5.369 16 Si 0.741 3.259 17 H -0.186 1.186 18 H -0.198 1.198 19 H -0.198 1.198 20 H 0.090 0.910 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.176 0.824 24 H 0.152 0.848 25 H 0.162 0.838 26 H 0.114 0.886 27 H 0.202 0.798 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.451 11.373 -0.009 14.169 hybrid contribution -1.871 -0.833 -0.004 2.048 sum -10.321 10.540 -0.013 14.752 Atomic orbital electron populations 1.21994 0.77644 1.04175 1.03133 1.43896 1.05723 1.05744 1.56091 1.21932 0.90632 0.90761 1.12031 1.20811 0.95450 0.95447 1.10931 1.21612 0.95177 0.94467 1.06252 1.17566 0.89789 0.85300 1.12947 1.21631 0.95543 0.90609 1.09198 1.75199 1.27908 0.90994 1.04776 1.48111 1.09318 0.99889 1.76102 1.16509 0.85076 0.83184 0.78610 1.90770 1.15373 1.83194 1.53989 1.19529 0.94729 0.89741 1.53156 0.91133 1.25761 0.94266 1.01152 0.92483 1.70082 1.01490 1.33748 1.31532 0.86158 0.79876 0.81346 0.78506 1.18551 1.19820 1.19825 0.90968 0.89936 0.89898 0.82366 0.84797 0.83755 0.88579 0.79812 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 10.89 59.85 0.65 1.28 15 2 N -0.44 -5.84 3.17 -121.23 -0.38 -6.23 15 3 C -0.02 -0.25 11.42 -16.48 -0.19 -0.44 15 4 C -0.20 -2.93 10.81 -39.96 -0.43 -3.36 15 5 C -0.15 -2.64 10.57 -38.74 -0.41 -3.05 15 6 C 0.06 0.96 6.73 -83.63 -0.56 0.40 15 7 C 0.04 0.70 10.37 -16.73 -0.17 0.53 15 8 N -0.18 -4.19 10.75 30.94 0.33 -3.85 15 9 N -0.59 -14.50 6.26 28.71 0.18 -14.32 15 10 C 0.56 16.55 7.62 -15.75 -0.12 16.43 15 11 O -0.55 -18.89 15.17 4.81 0.07 -18.82 15 12 C -0.53 -14.97 9.20 -38.40 -0.35 -15.33 15 13 H 0.07 1.76 7.85 -52.48 -0.41 1.35 15 14 C 0.09 2.39 5.49 -17.36 -0.10 2.29 15 15 N -0.74 -21.93 11.68 55.55 0.65 -21.28 15 16 Si 0.92 19.46 29.56 -169.99 -5.02 14.44 15 17 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 20 H 0.07 0.54 8.14 -51.93 -0.42 0.11 15 21 H 0.08 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.08 0.68 7.32 -51.93 -0.38 0.30 15 23 H 0.16 1.37 8.06 -52.49 -0.42 0.95 15 24 H 0.13 1.63 8.06 -52.49 -0.42 1.21 15 25 H 0.14 2.82 8.06 -52.49 -0.42 2.40 15 26 H 0.10 1.47 7.33 -52.48 -0.38 1.08 15 27 H 0.37 7.55 8.62 -182.59 -1.57 5.98 15 28 H 0.27 7.21 8.29 -40.82 -0.34 6.87 15 LS Contribution 260.88 15.07 3.93 3.93 Total: -1.00 -36.57 260.88 -5.93 -42.50 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.00 Total: 4.89 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.68 Total: -1.26 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.78 Total: -45.68 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.07 Total: -18.82 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -36.57 -5.93 -42.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211958279.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.504 kcal (2) G-P(sol) polarization free energy of solvation -36.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds