Wall clock time and date at job start Sun Mar 29 2020 21:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35788 * 125.71408 * 2 1 4 4 C 1.36342 * 109.01572 * 179.97438 * 3 2 1 5 5 C 1.39061 * 108.00955 * 0.02562 * 4 3 2 6 6 C 1.37837 * 125.71127 * 179.69641 * 2 1 3 7 7 C 1.40876 * 126.32068 * 0.02562 * 6 2 1 8 8 N 1.31427 * 120.00189 * 180.02562 * 7 6 2 9 9 N 1.40101 * 120.00160 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99962 * 180.02562 * 9 8 7 11 11 O 1.22114 * 120.00486 * 359.97438 * 10 9 8 12 12 C 1.39596 * 119.99653 * 180.02562 * 10 9 8 13 13 H 1.08003 * 120.00369 * 359.97438 * 12 10 9 14 14 C 1.40035 * 119.99794 * 179.97438 * 12 10 9 15 15 N 1.30708 * 120.00064 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99934 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47167 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47134 * 119.99984 * 16 14 12 19 19 H 1.48506 * 109.47094 * 240.00330 * 16 14 12 20 20 H 1.09002 * 109.47391 * 90.02180 * 1 2 3 21 21 H 1.09001 * 109.46813 * 330.02236 * 1 2 3 22 22 H 1.09004 * 109.47041 * 210.02363 * 1 2 3 23 23 H 1.08001 * 125.48809 * 359.94182 * 3 2 1 24 24 H 1.07994 * 125.99377 * 179.97438 * 4 3 2 25 25 H 1.07997 * 126.47985 * 180.02562 * 5 4 3 26 26 H 1.08003 * 120.00032 * 359.97438 * 7 6 2 27 27 H 0.97005 * 120.00060 * 0.02562 * 9 8 7 28 28 H 0.96995 * 120.00232 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2576 1.1025 0.0000 4 6 3.5636 0.7108 0.0006 5 6 3.5954 -0.6795 0.0004 6 6 2.2695 -1.1192 0.0059 7 6 1.8350 -2.4592 0.0125 8 7 2.7149 -3.4354 0.0183 9 7 2.2827 -4.7681 0.0243 10 6 3.1851 -5.7691 0.0307 11 8 4.3794 -5.5147 0.0308 12 6 2.7544 -7.0970 0.0361 13 1 1.6981 -7.3221 0.0356 14 6 3.6919 -8.1371 0.0423 15 7 4.9703 -7.8647 0.0424 16 14 3.1156 -9.9140 0.0488 17 1 1.6312 -9.9529 0.0470 18 1 3.6309 -10.6060 -1.1598 19 1 3.6266 -10.5956 1.2653 20 1 -0.3634 -0.0004 -1.0277 21 1 -0.3633 0.8902 0.5135 22 1 -0.3633 -0.8898 0.5142 23 1 1.9096 2.1249 -0.0009 24 1 4.4225 1.3653 0.0003 25 1 4.4782 -1.3015 0.0011 26 1 0.7787 -2.6844 0.0137 27 1 1.3340 -4.9703 0.0238 28 1 5.6197 -8.5851 0.0470 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211958279.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:39 Heat of formation + Delta-G solvation = 28.018974 kcal Electronic energy + Delta-G solvation = -13908.390576 eV Core-core repulsion = 11346.430456 eV Total energy + Delta-G solvation = -2561.960121 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.86297 -39.57948 -36.97136 -34.72598 -33.72099 -33.10364 -29.86128 -28.12523 -27.26116 -24.28158 -22.24338 -21.11365 -20.29535 -19.27221 -17.86514 -17.56778 -17.41317 -16.15045 -15.88954 -15.13853 -15.12010 -14.71975 -14.24477 -13.56909 -13.48881 -13.26838 -13.03487 -12.92060 -12.83863 -12.73557 -12.54709 -11.97855 -11.02364 -10.99019 -10.06493 -9.98504 -9.55948 -8.43219 -8.37451 -7.11784 0.30814 1.38611 1.39218 1.59075 1.80868 1.84766 2.19808 2.26433 2.49470 2.51735 3.65641 3.83284 4.05686 4.20476 4.48938 4.50532 4.72367 4.75736 4.82118 4.95300 5.17050 5.40960 5.47969 5.81659 5.99987 6.03828 6.16188 6.53073 6.66052 6.97008 7.46429 8.41042 8.59640 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.068105 B = 0.005239 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.032019 B = 5342.757809 C = 5738.642979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.426 5.426 3 C 0.024 3.976 4 C -0.225 4.225 5 C -0.167 4.167 6 C 0.004 3.996 7 C 0.092 3.908 8 N -0.264 5.264 9 N -0.594 5.594 10 C 0.542 3.458 11 O -0.620 6.620 12 C -0.559 4.559 13 H 0.096 0.904 14 C 0.027 3.973 15 N -0.799 5.799 16 Si 1.013 2.987 17 H -0.242 1.242 18 H -0.265 1.265 19 H -0.265 1.265 20 H 0.089 0.911 21 H 0.119 0.881 22 H 0.086 0.914 23 H 0.213 0.787 24 H 0.154 0.846 25 H 0.108 0.892 26 H 0.133 0.867 27 H 0.382 0.618 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.358 13.276 -0.002 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.101 5.101 3 C -0.113 4.113 4 C -0.249 4.249 5 C -0.196 4.196 6 C -0.108 4.108 7 C -0.115 4.115 8 N -0.074 5.074 9 N -0.339 5.339 10 C 0.353 3.647 11 O -0.506 6.506 12 C -0.595 4.595 13 H 0.114 0.886 14 C -0.191 4.191 15 N -0.427 5.427 16 Si 0.831 3.169 17 H -0.164 1.164 18 H -0.189 1.189 19 H -0.189 1.189 20 H 0.108 0.892 21 H 0.137 0.863 22 H 0.105 0.895 23 H 0.230 0.770 24 H 0.171 0.829 25 H 0.126 0.874 26 H 0.150 0.850 27 H 0.220 0.780 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.838 12.937 -0.001 17.536 hybrid contribution -0.958 -0.832 -0.011 1.269 sum -12.795 12.105 -0.013 17.614 Atomic orbital electron populations 1.22449 0.74304 1.06291 1.04956 1.44228 1.07639 1.04430 1.53789 1.22789 0.89550 0.92472 1.06467 1.21118 0.97778 0.93853 1.12168 1.21672 0.94943 0.96370 1.06661 1.17465 0.90449 0.85977 1.16905 1.22157 0.96852 0.90384 1.02096 1.75285 1.29850 0.90886 1.11352 1.47284 1.09148 1.00210 1.77289 1.16952 0.84828 0.84857 0.78109 1.90700 1.18032 1.84616 1.57217 1.20094 0.96338 0.89781 1.53260 0.88553 1.27202 0.93921 1.07207 0.90803 1.70255 1.03623 1.36189 1.32662 0.84760 0.80226 0.73101 0.78854 1.16428 1.18941 1.18939 0.89221 0.86276 0.89544 0.76992 0.82877 0.87370 0.84983 0.77973 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.72 10.89 127.77 1.39 2.11 15 2 N -0.43 -9.73 3.17 -537.46 -1.71 -11.44 15 3 C 0.02 0.48 11.42 83.64 0.95 1.43 15 4 C -0.23 -6.12 10.81 22.02 0.24 -5.88 15 5 C -0.17 -6.16 10.57 22.82 0.24 -5.92 15 6 C 0.00 0.15 6.73 39.19 0.26 0.41 15 7 C 0.09 3.44 10.37 85.40 0.89 4.32 15 8 N -0.26 -13.18 10.75 -56.04 -0.60 -13.78 15 9 N -0.59 -30.68 6.26 -181.13 -1.13 -31.81 15 10 C 0.54 34.08 7.62 84.57 0.64 34.72 15 11 O -0.62 -45.48 15.17 -5.69 -0.09 -45.56 15 12 C -0.56 -32.20 9.20 23.03 0.21 -31.99 15 13 H 0.10 4.82 7.85 -2.91 -0.02 4.80 15 14 C 0.03 1.52 5.49 85.30 0.47 1.99 15 15 N -0.80 -49.54 11.68 21.84 0.26 -49.28 15 16 Si 1.01 40.01 29.56 68.60 2.03 42.04 15 17 H -0.24 -8.65 7.11 99.48 0.71 -7.95 15 18 H -0.26 -10.01 7.11 99.48 0.71 -9.31 15 19 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 20 H 0.09 0.86 8.14 -2.39 -0.02 0.84 15 21 H 0.12 0.65 8.14 -2.39 -0.02 0.63 15 22 H 0.09 1.03 7.32 -2.38 -0.02 1.01 15 23 H 0.21 2.06 8.06 -2.91 -0.02 2.03 15 24 H 0.15 3.44 8.06 -2.91 -0.02 3.41 15 25 H 0.11 4.69 8.06 -2.91 -0.02 4.66 15 26 H 0.13 3.77 7.33 -2.91 -0.02 3.75 15 27 H 0.38 16.18 8.62 -213.31 -1.84 14.35 15 28 H 0.28 15.50 8.29 -92.71 -0.77 14.73 15 Total: -1.00 -88.38 260.88 3.40 -84.98 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.66 Total: 23.66 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 5.30 Total: 1.19 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -3.19 Total: -106.31 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.09 Total: -45.56 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -88.38 3.40 -84.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211958279.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.003 kcal (2) G-P(sol) polarization free energy of solvation -88.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds