Wall clock time and date at job start Sun Mar 29 2020 21:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99635 * 2 1 4 4 C 1.50698 * 109.46989 * 269.99710 * 3 2 1 5 5 H 1.08007 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99830 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99625 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00126 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.46873 * 89.99532 * 8 6 4 10 10 H 1.48497 * 109.47103 * 209.99741 * 8 6 4 11 11 H 1.48500 * 109.46942 * 329.99730 * 8 6 4 12 12 C 1.34771 * 120.00215 * 179.97438 * 2 1 3 13 13 O 1.21519 * 120.00039 * 182.19742 * 12 2 1 14 14 C 1.48149 * 120.00260 * 2.20176 * 12 2 1 15 15 C 1.39439 * 120.09979 * 172.85811 * 14 12 2 16 16 N 1.32079 * 119.87124 * 179.97438 * 15 14 12 17 17 C 1.32133 * 120.07800 * 0.02562 * 16 15 14 18 18 C 1.38733 * 120.18976 * 0.27648 * 17 16 15 19 19 N 1.31800 * 120.12693 * 359.42553 * 18 17 16 20 20 H 1.09003 * 109.46796 * 263.80311 * 1 2 3 21 21 H 1.08994 * 109.47375 * 23.80670 * 1 2 3 22 22 H 1.08997 * 109.47055 * 143.80389 * 1 2 3 23 23 H 1.08998 * 109.47456 * 29.99974 * 3 2 1 24 24 H 1.09001 * 109.46549 * 150.00200 * 3 2 1 25 25 H 0.96997 * 119.99450 * 180.02562 * 7 6 4 26 26 H 1.08001 * 120.06340 * 359.95744 * 15 14 12 27 27 H 1.07993 * 119.90738 * 179.97438 * 17 16 15 28 28 H 1.07999 * 119.93559 * 179.70325 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2418 6 6 3.1259 2.8781 -1.6728 7 7 3.3447 3.2579 -2.9128 8 14 3.7327 3.9294 -0.2530 9 1 5.1063 3.5084 0.1230 10 1 3.7475 5.3561 -0.6645 11 1 2.8268 3.7594 0.9113 12 6 2.1389 -1.1671 0.0005 13 8 3.3534 -1.1675 0.0409 14 6 1.3991 -2.4497 -0.0482 15 6 2.0912 -3.6510 -0.1978 16 7 1.4271 -4.7919 -0.2402 17 6 0.1095 -4.7953 -0.1415 18 6 -0.5825 -3.6013 0.0011 19 7 0.0727 -2.4588 0.0502 20 1 -0.3633 -0.1109 1.0217 21 1 -0.3634 0.9402 -0.4148 22 1 -0.3633 -0.8293 -0.6069 23 1 1.6084 2.0285 0.5138 24 1 3.1499 1.1384 0.5138 25 1 3.8214 4.0838 -3.0900 26 1 3.1681 -3.6484 -0.2791 27 1 -0.4308 -5.7297 -0.1769 28 1 -1.6598 -3.6084 0.0766 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218758724.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:47 Heat of formation + Delta-G solvation = 37.596734 kcal Electronic energy + Delta-G solvation = -14556.992187 eV Core-core repulsion = 11995.447389 eV Total energy + Delta-G solvation = -2561.544798 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.22209 -38.73050 -35.25705 -34.25751 -32.51791 -31.62518 -28.53058 -26.28584 -24.91645 -24.53976 -22.38678 -19.53128 -17.69997 -17.04403 -16.96516 -16.61506 -15.40936 -15.19042 -14.87651 -14.28658 -13.78824 -13.30189 -12.73990 -12.64005 -12.39063 -12.26204 -11.66889 -11.38759 -11.09342 -10.71004 -10.49007 -10.16400 -9.79961 -9.51590 -9.44920 -8.82360 -8.60599 -7.73886 -6.10434 -4.10023 0.44537 0.98384 3.09869 3.28811 3.34584 3.36456 3.52832 3.92011 4.08944 4.13722 4.38262 4.43334 4.80678 5.10411 5.15532 5.24537 5.45699 5.95707 6.09699 6.16771 6.53431 6.67746 6.88427 7.05906 7.27429 7.56527 7.59953 8.12701 8.42332 8.75647 8.92826 9.48864 11.02822 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053259 B = 0.007134 C = 0.006900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.603779 B = 3923.870626 C = 4056.906886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.570 5.570 3 C 0.212 3.788 4 C -0.531 4.531 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.558 3.442 13 O -0.531 6.531 14 C 0.046 3.954 15 C 0.104 3.896 16 N -0.442 5.442 17 C 0.058 3.942 18 C 0.039 3.961 19 N -0.405 5.405 20 H 0.046 0.954 21 H 0.066 0.934 22 H 0.093 0.907 23 H 0.035 0.965 24 H 0.040 0.960 25 H 0.265 0.735 26 H 0.183 0.817 27 H 0.171 0.829 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 -12.285 7.110 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.299 5.299 3 C 0.092 3.908 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.342 3.658 13 O -0.408 6.408 14 C -0.095 4.095 15 C -0.055 4.055 16 N -0.157 5.157 17 C -0.102 4.102 18 C -0.122 4.122 19 N -0.123 5.123 20 H 0.065 0.935 21 H 0.084 0.916 22 H 0.111 0.889 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.200 0.800 27 H 0.188 0.812 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.559 -12.065 7.025 16.376 hybrid contribution 0.132 0.628 0.493 0.809 sum -8.427 -11.438 7.518 16.074 Atomic orbital electron populations 1.22190 0.79452 1.03303 1.01267 1.47774 1.07413 1.06405 1.68309 1.19810 0.92628 0.79698 0.98671 1.21296 1.37263 1.07366 0.91044 0.90715 1.24853 0.95149 0.97275 0.95659 1.69897 1.41304 1.23554 1.18677 0.86833 0.80163 0.79756 0.82864 1.19803 1.21004 1.18999 1.17574 0.86609 0.82501 0.79100 1.90775 1.12535 1.86360 1.51147 1.22623 0.90825 0.96750 0.99286 1.23837 1.02517 0.87010 0.92166 1.68588 1.08837 1.28889 1.09351 1.24000 0.91299 0.99993 0.94939 1.24002 1.02242 0.88932 0.97026 1.69052 1.07710 1.28018 1.07538 0.93539 0.91572 0.88912 0.94733 0.94229 0.92486 0.80033 0.81178 0.80891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 9.32 59.85 0.56 1.95 15 2 N -0.57 -12.35 2.86 -183.96 -0.53 -12.88 15 3 C 0.21 5.27 4.22 -5.19 -0.02 5.25 15 4 C -0.53 -15.40 9.94 -34.44 -0.34 -15.74 15 5 H 0.07 2.38 8.06 -52.48 -0.42 1.96 15 6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 15 7 N -0.90 -27.67 13.96 55.43 0.77 -26.90 15 8 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 15 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 15 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 11 H -0.27 -6.12 6.54 56.52 0.37 -5.75 15 12 C 0.56 11.92 7.66 -12.19 -0.09 11.82 15 13 O -0.53 -12.95 15.93 5.35 0.09 -12.86 15 14 C 0.05 0.78 6.62 -82.84 -0.55 0.23 15 15 C 0.10 1.58 10.77 -17.00 -0.18 1.40 15 16 N -0.44 -5.86 10.49 -12.71 -0.13 -6.00 15 17 C 0.06 0.58 11.23 -17.24 -0.19 0.39 15 18 C 0.04 0.40 11.22 -17.38 -0.20 0.20 15 19 N -0.40 -5.77 6.22 -9.61 -0.06 -5.83 15 20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 21 H 0.07 1.14 8.02 -51.93 -0.42 0.73 15 22 H 0.09 1.50 5.26 -52.00 -0.27 1.22 15 23 H 0.03 0.81 7.13 -51.93 -0.37 0.44 15 24 H 0.04 1.03 6.82 -51.93 -0.35 0.68 15 25 H 0.27 7.63 8.31 -40.82 -0.34 7.29 15 26 H 0.18 2.67 7.67 -52.49 -0.40 2.27 15 27 H 0.17 0.98 8.06 -52.49 -0.42 0.56 15 28 H 0.17 1.03 8.06 -52.49 -0.42 0.61 15 LS Contribution 249.66 15.07 3.76 3.76 Total: -1.00 -34.20 249.66 -4.56 -38.76 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -2.67 Total: -2.46 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -1.12 Total: 7.55 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.05 Total: -51.60 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -34.20 -4.56 -38.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218758724.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.359 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds