Wall clock time and date at job start Sun Mar 29 2020 21:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99635 * 2 1 4 4 C 1.50698 * 109.46989 * 269.99710 * 3 2 1 5 5 H 1.08007 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99830 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99625 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00126 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.46873 * 89.99532 * 8 6 4 10 10 H 1.48497 * 109.47103 * 209.99741 * 8 6 4 11 11 H 1.48500 * 109.46942 * 329.99730 * 8 6 4 12 12 C 1.34771 * 120.00215 * 179.97438 * 2 1 3 13 13 O 1.21519 * 120.00039 * 182.19742 * 12 2 1 14 14 C 1.48149 * 120.00260 * 2.20176 * 12 2 1 15 15 C 1.39439 * 120.09979 * 172.85811 * 14 12 2 16 16 N 1.32079 * 119.87124 * 179.97438 * 15 14 12 17 17 C 1.32133 * 120.07800 * 0.02562 * 16 15 14 18 18 C 1.38733 * 120.18976 * 0.27648 * 17 16 15 19 19 N 1.31800 * 120.12693 * 359.42553 * 18 17 16 20 20 H 1.09003 * 109.46796 * 263.80311 * 1 2 3 21 21 H 1.08994 * 109.47375 * 23.80670 * 1 2 3 22 22 H 1.08997 * 109.47055 * 143.80389 * 1 2 3 23 23 H 1.08998 * 109.47456 * 29.99974 * 3 2 1 24 24 H 1.09001 * 109.46549 * 150.00200 * 3 2 1 25 25 H 0.96997 * 119.99450 * 180.02562 * 7 6 4 26 26 H 1.08001 * 120.06340 * 359.95744 * 15 14 12 27 27 H 1.07993 * 119.90738 * 179.97438 * 17 16 15 28 28 H 1.07999 * 119.93559 * 179.70325 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2418 6 6 3.1259 2.8781 -1.6728 7 7 3.3447 3.2579 -2.9128 8 14 3.7327 3.9294 -0.2530 9 1 5.1063 3.5084 0.1230 10 1 3.7475 5.3561 -0.6645 11 1 2.8268 3.7594 0.9113 12 6 2.1389 -1.1671 0.0005 13 8 3.3534 -1.1675 0.0409 14 6 1.3991 -2.4497 -0.0482 15 6 2.0912 -3.6510 -0.1978 16 7 1.4271 -4.7919 -0.2402 17 6 0.1095 -4.7953 -0.1415 18 6 -0.5825 -3.6013 0.0011 19 7 0.0727 -2.4588 0.0502 20 1 -0.3633 -0.1109 1.0217 21 1 -0.3634 0.9402 -0.4148 22 1 -0.3633 -0.8293 -0.6069 23 1 1.6084 2.0285 0.5138 24 1 3.1499 1.1384 0.5138 25 1 3.8214 4.0838 -3.0900 26 1 3.1681 -3.6484 -0.2791 27 1 -0.4308 -5.7297 -0.1769 28 1 -1.6598 -3.6084 0.0766 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218758724.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:47 Heat of formation + Delta-G solvation = 11.461252 kcal Electronic energy + Delta-G solvation = -14558.125506 eV Core-core repulsion = 11995.447389 eV Total energy + Delta-G solvation = -2562.678117 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.31981 -40.29651 -36.89916 -35.49996 -34.58243 -32.75574 -30.45980 -27.69920 -26.34373 -25.60134 -24.14252 -21.08009 -19.17871 -18.86395 -18.22690 -17.78170 -17.04582 -16.67952 -16.27556 -15.76338 -15.21170 -14.87773 -14.41422 -13.98673 -13.83900 -13.78940 -13.49979 -13.04529 -12.51966 -12.41126 -12.09496 -11.81971 -11.76723 -11.32380 -10.84758 -10.49939 -9.98635 -9.46071 -8.36022 -6.42553 -0.62810 0.00512 1.33416 1.37630 1.46385 1.71298 2.07116 2.30462 2.74082 2.93806 2.98828 3.19315 3.42385 3.68643 4.13193 4.32291 4.51966 4.55955 4.67239 4.80172 4.90952 5.11032 5.34810 5.40816 5.57292 6.07430 6.19130 6.46257 6.58162 6.65241 7.08580 7.24484 8.80986 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053259 B = 0.007134 C = 0.006900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.603779 B = 3923.870626 C = 4056.906886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.583 5.583 3 C 0.220 3.780 4 C -0.541 4.541 5 H 0.026 0.974 6 C 0.013 3.987 7 N -0.944 5.944 8 Si 0.951 3.049 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.237 1.237 12 C 0.550 3.450 13 O -0.579 6.579 14 C 0.016 3.984 15 C 0.097 3.903 16 N -0.457 5.457 17 C 0.084 3.916 18 C 0.056 3.944 19 N -0.418 5.418 20 H 0.073 0.927 21 H 0.059 0.941 22 H 0.105 0.895 23 H 0.056 0.944 24 H 0.026 0.974 25 H 0.270 0.730 26 H 0.170 0.830 27 H 0.224 0.776 28 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.744 -13.594 8.897 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.312 5.312 3 C 0.098 3.902 4 C -0.580 4.580 5 H 0.045 0.955 6 C -0.186 4.186 7 N -0.584 5.584 8 Si 0.773 3.227 9 H -0.199 1.199 10 H -0.198 1.198 11 H -0.160 1.160 12 C 0.336 3.664 13 O -0.460 6.460 14 C -0.121 4.121 15 C -0.061 4.061 16 N -0.172 5.172 17 C -0.079 4.079 18 C -0.108 4.108 19 N -0.136 5.136 20 H 0.091 0.909 21 H 0.078 0.922 22 H 0.123 0.877 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.187 0.813 27 H 0.241 0.759 28 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -10.988 -13.367 8.818 19.421 hybrid contribution 0.697 0.795 -0.146 1.068 sum -10.290 -12.572 8.672 18.416 Atomic orbital electron populations 1.22389 0.76800 1.03546 1.03147 1.47882 1.09115 1.05564 1.68592 1.19509 0.92997 0.81889 0.95780 1.21493 1.37335 1.07071 0.92052 0.95544 1.25873 0.95066 0.98796 0.98835 1.70049 1.42448 1.24500 1.21362 0.85671 0.79669 0.77710 0.79655 1.19903 1.19812 1.16039 1.18276 0.86493 0.83960 0.77640 1.90717 1.14712 1.87418 1.53111 1.21816 0.92075 0.94574 1.03663 1.23635 1.02346 0.87304 0.92786 1.68678 1.10777 1.27528 1.10191 1.24970 0.90057 1.02183 0.90648 1.24909 1.04320 0.87474 0.94075 1.68868 1.06275 1.30445 1.08057 0.90895 0.92184 0.87683 0.92608 0.95618 0.92100 0.81253 0.75918 0.75667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.77 9.32 127.77 1.19 3.96 15 2 N -0.58 -25.70 2.86 -854.23 -2.44 -28.14 15 3 C 0.22 11.09 4.22 85.63 0.36 11.45 15 4 C -0.54 -32.62 9.94 25.60 0.25 -32.36 15 5 H 0.03 1.79 8.06 -2.91 -0.02 1.76 15 6 C 0.01 0.75 5.47 84.66 0.46 1.22 15 7 N -0.94 -60.22 13.96 21.45 0.30 -59.92 15 8 Si 0.95 44.64 27.47 68.60 1.88 46.53 15 9 H -0.27 -12.84 7.11 99.48 0.71 -12.14 15 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 11 H -0.24 -9.99 6.54 99.48 0.65 -9.34 15 12 C 0.55 24.35 7.66 86.88 0.67 25.01 15 13 O -0.58 -29.93 15.93 -3.78 -0.06 -29.99 15 14 C 0.02 0.56 6.62 41.89 0.28 0.83 15 15 C 0.10 2.94 10.77 84.95 0.92 3.86 15 16 N -0.46 -11.05 10.49 -194.13 -2.04 -13.09 15 17 C 0.08 1.25 11.23 84.77 0.95 2.20 15 18 C 0.06 0.85 11.22 84.82 0.95 1.80 15 19 N -0.42 -10.88 6.22 -184.33 -1.15 -12.03 15 20 H 0.07 2.03 8.14 -2.39 -0.02 2.01 15 21 H 0.06 2.04 8.02 -2.39 -0.02 2.02 15 22 H 0.11 3.25 5.26 -2.53 -0.01 3.24 15 23 H 0.06 2.56 7.13 -2.39 -0.02 2.54 15 24 H 0.03 1.36 6.82 -2.39 -0.02 1.35 15 25 H 0.27 15.92 8.31 -92.71 -0.77 15.15 15 26 H 0.17 5.35 7.67 -2.91 -0.02 5.33 15 27 H 0.22 0.95 8.06 -2.91 -0.02 0.92 15 28 H 0.23 1.05 8.06 -2.91 -0.02 1.03 15 Total: -1.00 -79.97 249.66 3.65 -76.32 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: 1.12 Total: 2.34 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 6.03 Total: 17.98 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -5.32 Total: -113.18 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.06 Total: -29.99 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Total: -79.97 3.65 -76.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218758724.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.785 kcal (2) G-P(sol) polarization free energy of solvation -79.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds