Wall clock time and date at job start Sun Mar 29 2020 21:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48500 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47175 * 300.00192 * 3 2 1 6 6 H 1.48492 * 109.47006 * 60.00674 * 3 2 1 7 7 C 1.37877 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99768 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46656 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46990 * 180.02562 * 11 10 9 13 13 C 1.38237 * 119.99999 * 269.72682 * 12 11 10 14 14 C 1.38230 * 119.99851 * 179.76640 * 13 12 11 15 15 C 1.38235 * 120.00073 * 0.50570 * 14 13 12 16 16 C 1.50700 * 119.99778 * 179.72464 * 15 14 13 17 17 O 1.42905 * 109.47184 * 270.02226 * 16 15 14 18 18 C 1.38233 * 120.00245 * 359.74647 * 15 14 13 19 19 C 1.38235 * 120.00062 * 89.99891 * 12 11 10 20 20 H 0.96997 * 120.00560 * 359.97438 * 1 2 3 21 21 H 1.08990 * 109.47142 * 59.99937 * 9 7 2 22 22 H 1.09004 * 109.46726 * 299.99835 * 9 7 2 23 23 H 1.00896 * 111.00219 * 303.95295 * 10 9 7 24 24 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 25 25 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 26 26 H 1.08001 * 119.99665 * 359.97438 * 13 12 11 27 27 H 1.08001 * 119.99972 * 180.22884 * 14 13 12 28 28 H 1.08999 * 109.47711 * 30.02457 * 16 15 14 29 29 H 1.09000 * 109.46946 * 150.02705 * 16 15 14 30 30 H 0.96698 * 113.99809 * 180.02562 * 17 16 15 31 31 H 1.07999 * 120.00212 * 179.97438 * 18 15 14 32 32 H 1.07998 * 119.99945 * 0.02562 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 6 2.5149 -6.0259 -0.0019 13 6 2.9729 -6.5430 -1.1993 14 6 3.9025 -7.5660 -1.1999 15 6 4.3664 -8.0791 -0.0031 16 6 5.3752 -9.1986 -0.0038 17 8 4.6932 -10.4544 -0.0033 18 6 3.9046 -7.5656 1.1944 19 6 2.9788 -6.5390 1.1950 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8902 22 1 0.6247 -2.5571 0.8897 23 1 2.8400 -3.5483 -0.7836 24 1 0.8815 -4.9816 0.8895 25 1 0.8795 -4.9814 -0.8905 26 1 2.6068 -6.1454 -2.1343 27 1 4.2630 -7.9675 -2.1355 28 1 5.9995 -9.1247 -0.8942 29 1 6.0007 -9.1246 0.8857 30 1 5.2818 -11.2216 -0.0033 31 1 4.2667 -7.9668 2.1295 32 1 2.6175 -6.1383 2.1305 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219519176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:57 Heat of formation + Delta-G solvation = -33.866946 kcal Electronic energy + Delta-G solvation = -13949.539857 eV Core-core repulsion = 11488.436505 eV Total energy + Delta-G solvation = -2461.103352 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39169 -36.91390 -35.23050 -32.77114 -31.29672 -30.76965 -27.77831 -25.68965 -23.29055 -22.56431 -21.40301 -20.46574 -17.62620 -16.69567 -15.95394 -15.71154 -15.06710 -14.59107 -14.34949 -13.81350 -13.52714 -13.41716 -13.18951 -12.64518 -12.23513 -11.87138 -11.44050 -11.28811 -10.95606 -10.81628 -10.67913 -10.53121 -10.25722 -9.93896 -9.19243 -8.73633 -8.53274 -8.45591 -7.30632 -6.03580 -4.05583 1.41404 1.59714 3.31220 3.38326 3.43801 3.78285 4.37880 4.44355 4.82594 4.90790 5.11131 5.17926 5.22094 5.26810 5.32404 5.55650 5.68176 5.75673 5.96980 6.06499 6.26390 6.29799 6.56261 6.67490 6.90973 7.15668 7.23408 7.40026 7.40510 7.77915 8.11226 8.37497 8.59041 9.03925 9.59406 11.07585 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.064687 B = 0.004445 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.748362 B = 6297.792040 C = 6413.411007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.683 5.683 11 C 0.092 3.908 12 C -0.058 4.058 13 C -0.120 4.120 14 C -0.101 4.101 15 C -0.108 4.108 16 C 0.120 3.880 17 O -0.568 6.568 18 C -0.102 4.102 19 C -0.103 4.103 20 H 0.261 0.739 21 H -0.013 1.013 22 H 0.029 0.971 23 H 0.330 0.670 24 H 0.074 0.926 25 H 0.029 0.971 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.376 0.624 31 H 0.118 0.882 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.898 -17.218 -0.730 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.314 5.314 11 C -0.038 4.038 12 C -0.058 4.058 13 C -0.138 4.138 14 C -0.119 4.119 15 C -0.108 4.108 16 C 0.043 3.957 17 O -0.374 6.374 18 C -0.120 4.120 19 C -0.121 4.121 20 H 0.071 0.929 21 H 0.005 0.995 22 H 0.047 0.953 23 H 0.146 0.854 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.223 0.777 31 H 0.137 0.863 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.287 -16.669 -0.039 18.615 hybrid contribution 0.534 0.608 -0.912 1.220 sum 8.821 -16.060 -0.951 18.348 Atomic orbital electron populations 1.69971 1.06089 1.26713 1.50995 1.24997 0.94888 0.99404 0.95335 0.86415 0.80070 0.83270 0.77507 1.19636 1.21086 1.20969 1.21221 0.93587 0.90163 1.50228 0.91871 1.19603 0.90619 0.87306 0.95902 1.60732 1.21089 1.00502 1.49051 1.20918 0.93388 0.88734 1.00724 1.20108 0.96985 0.95822 0.92929 1.21069 0.97821 0.97053 0.97902 1.20920 0.97138 0.96720 0.97134 1.19497 1.00053 0.97507 0.93758 1.20964 0.92268 0.82349 1.00140 1.86598 1.37807 1.15279 1.97709 1.20983 0.97190 0.96670 0.97122 1.21058 0.96972 0.95920 0.98164 0.92945 0.99491 0.95285 0.85378 0.90804 0.95309 0.86126 0.86430 0.92983 0.92936 0.77699 0.86349 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.75 9.32 -34.44 -0.32 -15.07 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 5.11 5.44 -4.97 -0.03 5.09 16 10 N -0.68 -15.06 6.48 -116.33 -0.75 -15.81 16 11 C 0.09 1.69 5.81 -4.97 -0.03 1.66 16 12 C -0.06 -0.94 5.39 -104.62 -0.56 -1.50 16 13 C -0.12 -1.76 9.70 -39.58 -0.38 -2.15 16 14 C -0.10 -1.35 9.70 -39.59 -0.38 -1.73 16 15 C -0.11 -1.41 5.51 -104.62 -0.58 -1.98 16 16 C 0.12 1.18 7.17 36.01 0.26 1.44 16 17 O -0.57 -5.80 13.64 -35.23 -0.48 -6.28 16 18 C -0.10 -1.37 9.70 -39.58 -0.38 -1.76 16 19 C -0.10 -1.56 9.70 -39.58 -0.38 -1.94 16 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 21 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 16 22 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.33 7.02 8.72 -39.29 -0.34 6.68 16 24 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 25 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 26 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 30 H 0.38 1.82 9.12 45.56 0.42 2.24 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 281.99 15.07 4.25 4.25 Total: -1.00 -32.40 281.99 -7.85 -40.25 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -3.69 Total: 3.52 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.89 Total: -16.45 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.02 Total: -42.12 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.48 Total: -6.28 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.40 -7.85 -40.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219519176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.388 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds