Wall clock time and date at job start Sun Mar 29 2020 21:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48500 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47175 * 300.00192 * 3 2 1 6 6 H 1.48492 * 109.47006 * 60.00674 * 3 2 1 7 7 C 1.37877 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99768 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46656 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46990 * 180.02562 * 11 10 9 13 13 C 1.38237 * 119.99999 * 269.72682 * 12 11 10 14 14 C 1.38230 * 119.99851 * 179.76640 * 13 12 11 15 15 C 1.38235 * 120.00073 * 0.50570 * 14 13 12 16 16 C 1.50700 * 119.99778 * 179.72464 * 15 14 13 17 17 O 1.42905 * 109.47184 * 270.02226 * 16 15 14 18 18 C 1.38233 * 120.00245 * 359.74647 * 15 14 13 19 19 C 1.38235 * 120.00062 * 89.99891 * 12 11 10 20 20 H 0.96997 * 120.00560 * 359.97438 * 1 2 3 21 21 H 1.08990 * 109.47142 * 59.99937 * 9 7 2 22 22 H 1.09004 * 109.46726 * 299.99835 * 9 7 2 23 23 H 1.00896 * 111.00219 * 303.95295 * 10 9 7 24 24 H 1.09002 * 109.46991 * 299.99841 * 11 10 9 25 25 H 1.09000 * 109.47202 * 60.00133 * 11 10 9 26 26 H 1.08001 * 119.99665 * 359.97438 * 13 12 11 27 27 H 1.08001 * 119.99972 * 180.22884 * 14 13 12 28 28 H 1.08999 * 109.47711 * 30.02457 * 16 15 14 29 29 H 1.09000 * 109.46946 * 150.02705 * 16 15 14 30 30 H 0.96698 * 113.99809 * 180.02562 * 17 16 15 31 31 H 1.07999 * 120.00212 * 179.97438 * 18 15 14 32 32 H 1.07998 * 119.99945 * 0.02562 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 6 2.5149 -6.0259 -0.0019 13 6 2.9729 -6.5430 -1.1993 14 6 3.9025 -7.5660 -1.1999 15 6 4.3664 -8.0791 -0.0031 16 6 5.3752 -9.1986 -0.0038 17 8 4.6932 -10.4544 -0.0033 18 6 3.9046 -7.5656 1.1944 19 6 2.9788 -6.5390 1.1950 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8902 22 1 0.6247 -2.5571 0.8897 23 1 2.8400 -3.5483 -0.7836 24 1 0.8815 -4.9816 0.8895 25 1 0.8795 -4.9814 -0.8905 26 1 2.6068 -6.1454 -2.1343 27 1 4.2630 -7.9675 -2.1355 28 1 5.9995 -9.1247 -0.8942 29 1 6.0007 -9.1246 0.8857 30 1 5.2818 -11.2216 -0.0033 31 1 4.2667 -7.9668 2.1295 32 1 2.6175 -6.1383 2.1305 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219519176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:56 Heat of formation + Delta-G solvation = -57.938331 kcal Electronic energy + Delta-G solvation = -13950.583671 eV Core-core repulsion = 11488.436505 eV Total energy + Delta-G solvation = -2462.147166 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47445 -37.84026 -36.82840 -34.72023 -32.72081 -31.84837 -29.40540 -27.22226 -24.72200 -23.67015 -23.34516 -21.61603 -18.69286 -18.31855 -17.29053 -16.84779 -16.64414 -16.13962 -15.78146 -15.24693 -14.83474 -14.59161 -14.28319 -14.23922 -13.60632 -13.47304 -13.16800 -12.74855 -12.64921 -12.55811 -12.13293 -11.92716 -11.74281 -11.28917 -10.93310 -10.68719 -9.82424 -9.66813 -9.15095 -8.24078 -6.35743 0.30863 0.50746 1.41053 1.41864 1.56066 2.39367 2.72364 3.09162 3.57557 3.73180 3.86699 3.97997 4.11013 4.21356 4.24735 4.53577 4.57961 4.60594 4.68296 4.80884 5.04056 5.07967 5.17559 5.21934 5.46101 5.58883 5.63920 5.73967 5.98399 6.07967 6.39390 6.66060 6.85203 6.95902 7.35288 8.87779 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.064687 B = 0.004445 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.748362 B = 6297.792040 C = 6413.411007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.206 3.794 10 N -0.681 5.681 11 C 0.097 3.903 12 C -0.080 4.080 13 C -0.127 4.127 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.121 3.879 17 O -0.590 6.590 18 C -0.106 4.106 19 C -0.116 4.116 20 H 0.266 0.734 21 H -0.036 1.036 22 H 0.002 0.998 23 H 0.335 0.665 24 H 0.067 0.933 25 H 0.029 0.971 26 H 0.127 0.873 27 H 0.142 0.858 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.399 0.601 31 H 0.141 0.859 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.956 -17.992 -0.954 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.078 3.922 10 N -0.312 5.312 11 C -0.032 4.032 12 C -0.081 4.081 13 C -0.146 4.146 14 C -0.122 4.122 15 C -0.111 4.111 16 C 0.044 3.956 17 O -0.399 6.399 18 C -0.123 4.123 19 C -0.134 4.134 20 H 0.075 0.925 21 H -0.019 1.019 22 H 0.020 0.980 23 H 0.152 0.848 24 H 0.086 0.914 25 H 0.047 0.953 26 H 0.145 0.855 27 H 0.160 0.840 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.250 0.750 31 H 0.158 0.842 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.365 -17.484 -0.264 20.328 hybrid contribution -0.097 0.712 -0.841 1.106 sum 10.268 -16.773 -1.105 19.697 Atomic orbital electron populations 1.70095 1.07829 1.28046 1.51462 1.25978 0.95823 1.03468 0.94475 0.85239 0.78869 0.78076 0.77828 1.18679 1.20166 1.20286 1.21554 0.93804 0.91344 1.50736 0.91785 1.19263 0.90659 0.88796 0.93439 1.60598 1.20381 1.00869 1.49314 1.20867 0.94042 0.87955 1.00367 1.19908 0.97827 0.96063 0.94255 1.21210 0.98256 0.97584 0.97523 1.21235 0.96420 0.95996 0.98548 1.19997 0.99791 0.97987 0.93283 1.21000 0.91287 0.81277 1.02049 1.86523 1.39357 1.16244 1.97819 1.21261 0.96527 0.95972 0.98590 1.21166 0.97756 0.96778 0.97731 0.92530 1.01884 0.97976 0.84822 0.91444 0.95308 0.85546 0.83994 0.91026 0.91132 0.75008 0.84151 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.98 44.73 29.54 68.60 2.03 46.76 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -31.27 9.32 25.60 0.24 -31.03 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.21 11.38 5.44 85.56 0.47 11.85 16 10 N -0.68 -30.82 6.48 -521.96 -3.38 -34.20 16 11 C 0.10 3.68 5.81 85.56 0.50 4.18 16 12 C -0.08 -2.61 5.39 -19.87 -0.11 -2.71 16 13 C -0.13 -3.64 9.70 22.27 0.22 -3.43 16 14 C -0.10 -2.55 9.70 22.27 0.22 -2.34 16 15 C -0.11 -2.60 5.51 -19.87 -0.11 -2.71 16 16 C 0.12 1.96 7.17 71.24 0.51 2.47 16 17 O -0.59 -10.17 13.64 -148.98 -2.03 -12.20 16 18 C -0.11 -2.67 9.70 22.27 0.22 -2.46 16 19 C -0.12 -3.47 9.70 22.27 0.22 -3.26 16 20 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 21 H -0.04 -2.15 8.14 -2.39 -0.02 -2.16 16 22 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 23 H 0.33 14.50 8.72 -89.70 -0.78 13.72 16 24 H 0.07 2.60 8.08 -2.39 -0.02 2.58 16 25 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 26 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 27 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 28 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 29 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 30 H 0.40 2.55 9.12 -74.06 -0.68 1.88 16 31 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -69.44 281.99 -0.62 -70.06 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -0.34 Total: 15.34 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 2.82 Total: -28.93 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -3.10 Total: -91.02 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -2.03 Total: -12.20 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -69.44 -0.62 -70.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219519176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.121 kcal (2) G-P(sol) polarization free energy of solvation -69.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds