Wall clock time and date at job start Sun Mar 29 2020 21:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47048 * 2 1 4 4 C 1.36777 * 119.99699 * 262.37730 * 3 2 1 5 5 H 1.07991 * 119.99862 * 196.16321 * 4 3 2 6 6 C 1.39119 * 119.99924 * 16.16956 * 4 3 2 7 7 N 1.31319 * 119.99740 * 19.97119 * 6 4 3 8 8 Si 1.86792 * 119.99758 * 199.96733 * 6 4 3 9 9 H 1.48504 * 109.47060 * 90.00446 * 8 6 4 10 10 H 1.48507 * 109.46992 * 209.99919 * 8 6 4 11 11 H 1.48500 * 109.47616 * 330.00053 * 8 6 4 12 12 C 1.34773 * 120.00379 * 82.38186 * 3 2 1 13 13 O 1.21562 * 120.00139 * 182.41200 * 12 3 2 14 14 C 1.47983 * 119.99524 * 2.40789 * 12 3 2 15 15 C 1.39549 * 120.10308 * 172.74442 * 14 12 3 16 16 N 1.32051 * 119.86119 * 180.02562 * 15 14 12 17 17 C 1.32159 * 120.08358 * 359.97438 * 16 15 14 18 18 C 1.38719 * 120.21426 * 0.25153 * 17 16 15 19 19 N 1.31804 * 120.13921 * 359.48330 * 18 17 16 20 20 H 1.08997 * 109.47325 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47583 * 300.00004 * 1 2 3 22 22 H 1.09000 * 109.47439 * 60.00278 * 1 2 3 23 23 H 1.09000 * 109.47583 * 239.99996 * 2 1 3 24 24 H 1.09000 * 109.47439 * 119.99722 * 2 1 3 25 25 H 0.97003 * 119.99628 * 179.97438 * 7 6 4 26 26 H 1.07997 * 120.06713 * 0.02562 * 15 14 12 27 27 H 1.07995 * 119.89250 * 179.97438 * 17 16 15 28 28 H 1.08002 * 119.92748 * 179.72150 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3943 1.9736 -1.1741 5 1 2.9892 2.8747 -1.1579 6 6 2.0104 1.4153 -2.3891 7 7 0.9953 0.5835 -2.4379 8 14 2.9386 1.8488 -3.9510 9 1 4.0548 0.8888 -4.1461 10 1 2.0152 1.7767 -5.1118 11 1 3.4839 3.2254 -3.8370 12 6 2.0970 2.0682 1.1568 13 8 2.4605 3.2282 1.1514 14 6 1.7409 1.4104 2.4336 15 6 1.9643 2.0661 3.6450 16 7 1.6452 1.4744 4.7816 17 6 1.1149 0.2639 4.7722 18 6 0.8958 -0.3929 3.5702 19 7 1.2062 0.1917 2.4304 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 0.7274 0.1945 -3.2851 26 1 2.3972 3.0555 3.6529 27 1 0.8555 -0.2173 5.7035 28 1 0.4664 -1.3839 3.5681 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223875687.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:54 Heat of formation + Delta-G solvation = 46.507002 kcal Electronic energy + Delta-G solvation = -15080.967713 eV Core-core repulsion = 12519.809293 eV Total energy + Delta-G solvation = -2561.158420 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.66184 -38.19702 -35.22294 -33.89240 -31.86577 -30.95535 -29.35620 -25.82678 -24.26118 -23.70459 -22.10247 -19.94583 -17.42021 -16.85308 -16.49960 -16.04940 -15.11778 -14.60603 -14.24624 -14.07645 -13.39114 -12.98451 -12.89063 -12.19490 -11.97680 -11.39456 -11.20526 -11.00197 -10.75897 -10.73317 -10.42356 -10.19507 -9.61678 -9.05095 -8.94218 -8.87770 -8.24712 -7.76695 -6.51250 -3.93455 0.94546 1.50785 3.06662 3.16203 3.21238 3.64128 3.95374 4.38485 4.45176 4.65609 4.75875 5.03406 5.05369 5.33163 5.69397 5.79550 5.92291 6.51042 6.72551 6.78835 6.86538 7.09227 7.27122 7.37076 7.62194 7.83880 7.93179 8.15062 8.39501 9.01274 9.24737 9.88101 10.41647 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.050007 B = 0.009092 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.787563 B = 3078.733190 C = 3521.101260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.120 3.880 3 N -0.393 5.393 4 C -0.297 4.297 5 H 0.109 0.891 6 C 0.033 3.967 7 N -0.841 5.841 8 Si 0.931 3.069 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.460 3.540 13 O -0.596 6.596 14 C 0.067 3.933 15 C 0.082 3.918 16 N -0.446 5.446 17 C 0.026 3.974 18 C 0.039 3.961 19 N -0.409 5.409 20 H 0.032 0.968 21 H 0.025 0.975 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.273 0.727 26 H 0.174 0.826 27 H 0.161 0.839 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 -5.308 6.087 8.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.003 4.003 3 N -0.106 5.106 4 C -0.426 4.426 5 H 0.127 0.873 6 C -0.174 4.174 7 N -0.478 5.478 8 Si 0.756 3.244 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.190 1.190 12 C 0.249 3.751 13 O -0.484 6.484 14 C -0.073 4.073 15 C -0.080 4.080 16 N -0.160 5.160 17 C -0.134 4.134 18 C -0.122 4.122 19 N -0.128 5.128 20 H 0.051 0.949 21 H 0.044 0.956 22 H 0.106 0.894 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.192 0.808 27 H 0.178 0.822 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.897 -4.865 5.871 7.677 hybrid contribution 0.139 -0.151 -0.681 0.711 sum -0.758 -5.016 5.189 7.257 Atomic orbital electron populations 1.21962 0.96154 0.99415 1.01449 1.21775 0.95294 0.82304 1.00964 1.43910 1.49653 1.11593 1.05467 1.19986 1.29539 1.11088 0.81975 0.87306 1.25489 0.95401 0.96674 0.99853 1.70085 1.21427 1.28977 1.27302 0.85851 0.79221 0.79542 0.79767 1.20018 1.20701 1.19006 1.17230 0.89063 0.86279 0.82553 1.90612 1.55788 1.16270 1.85710 1.22730 0.96376 0.91223 0.96985 1.23639 0.96091 1.00943 0.87295 1.68442 1.08523 1.09362 1.29661 1.23700 0.97865 0.92409 0.99428 1.23895 0.97723 1.01220 0.89359 1.69332 1.07346 1.08443 1.27685 0.94911 0.95567 0.89420 0.90264 0.90969 0.91671 0.80847 0.82157 0.81865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.03 37.15 0.34 -2.57 15 2 C 0.12 2.77 4.86 -4.04 -0.02 2.75 15 3 N -0.39 -10.23 2.64 -115.85 -0.31 -10.53 15 4 C -0.30 -8.05 9.35 -15.02 -0.14 -8.19 15 5 H 0.11 3.07 7.37 -52.49 -0.39 2.69 15 6 C 0.03 0.82 4.92 -17.44 -0.09 0.73 15 7 N -0.84 -20.91 8.43 55.50 0.47 -20.44 15 8 Si 0.93 19.54 29.60 -169.99 -5.03 14.51 15 9 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 10 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 11 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 12 C 0.46 11.81 7.54 -12.27 -0.09 11.72 15 13 O -0.60 -16.81 16.02 5.31 0.09 -16.73 15 14 C 0.07 1.44 6.48 -82.84 -0.54 0.90 15 15 C 0.08 1.58 10.77 -16.97 -0.18 1.40 15 16 N -0.45 -7.60 10.49 -12.69 -0.13 -7.73 15 17 C 0.03 0.37 11.23 -17.23 -0.19 0.18 15 18 C 0.04 0.58 11.22 -17.39 -0.20 0.38 15 19 N -0.41 -7.80 4.43 -9.62 -0.04 -7.84 15 20 H 0.03 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.03 0.57 6.60 -51.93 -0.34 0.23 15 22 H 0.09 2.16 5.96 -51.93 -0.31 1.85 15 23 H 0.08 1.93 6.16 -51.93 -0.32 1.61 15 24 H 0.07 1.57 5.36 -51.93 -0.28 1.29 15 25 H 0.27 6.34 8.31 -40.82 -0.34 6.00 15 26 H 0.17 3.24 7.67 -52.49 -0.40 2.84 15 27 H 0.16 1.57 8.06 -52.49 -0.42 1.15 15 28 H 0.16 1.75 8.06 -52.49 -0.42 1.32 15 LS Contribution 240.00 15.07 3.62 3.62 Total: -1.00 -29.70 240.00 -4.90 -34.59 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -2.44 Total: 3.26 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -1.11 Total: 7.29 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.01 Total: -46.54 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.09 Total: -16.73 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.70 -4.90 -34.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223875687.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.101 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds