Wall clock time and date at job start Sun Mar 29 2020 21:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47048 * 2 1 4 4 C 1.36777 * 119.99699 * 262.37730 * 3 2 1 5 5 H 1.07991 * 119.99862 * 196.16321 * 4 3 2 6 6 C 1.39119 * 119.99924 * 16.16956 * 4 3 2 7 7 N 1.31319 * 119.99740 * 19.97119 * 6 4 3 8 8 Si 1.86792 * 119.99758 * 199.96733 * 6 4 3 9 9 H 1.48504 * 109.47060 * 90.00446 * 8 6 4 10 10 H 1.48507 * 109.46992 * 209.99919 * 8 6 4 11 11 H 1.48500 * 109.47616 * 330.00053 * 8 6 4 12 12 C 1.34773 * 120.00379 * 82.38186 * 3 2 1 13 13 O 1.21562 * 120.00139 * 182.41200 * 12 3 2 14 14 C 1.47983 * 119.99524 * 2.40789 * 12 3 2 15 15 C 1.39549 * 120.10308 * 172.74442 * 14 12 3 16 16 N 1.32051 * 119.86119 * 180.02562 * 15 14 12 17 17 C 1.32159 * 120.08358 * 359.97438 * 16 15 14 18 18 C 1.38719 * 120.21426 * 0.25153 * 17 16 15 19 19 N 1.31804 * 120.13921 * 359.48330 * 18 17 16 20 20 H 1.08997 * 109.47325 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47583 * 300.00004 * 1 2 3 22 22 H 1.09000 * 109.47439 * 60.00278 * 1 2 3 23 23 H 1.09000 * 109.47583 * 239.99996 * 2 1 3 24 24 H 1.09000 * 109.47439 * 119.99722 * 2 1 3 25 25 H 0.97003 * 119.99628 * 179.97438 * 7 6 4 26 26 H 1.07997 * 120.06713 * 0.02562 * 15 14 12 27 27 H 1.07995 * 119.89250 * 179.97438 * 17 16 15 28 28 H 1.08002 * 119.92748 * 179.72150 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3943 1.9736 -1.1741 5 1 2.9892 2.8747 -1.1579 6 6 2.0104 1.4153 -2.3891 7 7 0.9953 0.5835 -2.4379 8 14 2.9386 1.8488 -3.9510 9 1 4.0548 0.8888 -4.1461 10 1 2.0152 1.7767 -5.1118 11 1 3.4839 3.2254 -3.8370 12 6 2.0970 2.0682 1.1568 13 8 2.4605 3.2282 1.1514 14 6 1.7409 1.4104 2.4336 15 6 1.9643 2.0661 3.6450 16 7 1.6452 1.4744 4.7816 17 6 1.1149 0.2639 4.7722 18 6 0.8958 -0.3929 3.5702 19 7 1.2062 0.1917 2.4304 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 0.7274 0.1945 -3.2851 26 1 2.3972 3.0555 3.6529 27 1 0.8555 -0.2173 5.7035 28 1 0.4664 -1.3839 3.5681 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223875687.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:54 Heat of formation + Delta-G solvation = 26.404482 kcal Electronic energy + Delta-G solvation = -15081.839424 eV Core-core repulsion = 12519.809293 eV Total energy + Delta-G solvation = -2562.030130 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.13041 -40.02222 -37.16375 -35.36901 -33.71231 -32.40943 -31.19384 -27.60747 -25.77127 -25.19802 -23.91468 -21.67434 -19.13208 -18.57202 -17.95647 -17.58563 -16.92832 -16.23622 -15.91361 -15.65556 -15.07215 -14.70750 -14.59549 -13.79865 -13.66042 -13.17938 -12.87914 -12.73350 -12.46197 -12.29271 -12.11145 -11.97257 -11.35928 -10.88549 -10.78479 -10.32322 -9.90279 -9.60748 -8.37995 -5.96115 -0.45109 0.14845 1.38169 1.42591 1.54535 1.98275 2.22590 2.78625 2.83125 3.13448 3.29955 3.34202 3.62458 3.95736 4.31379 4.42855 4.65434 4.72171 5.01411 5.09554 5.24880 5.34212 5.43491 5.53564 5.97174 6.01824 6.25184 6.46100 6.79716 7.07589 7.35114 7.94891 8.53909 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.050007 B = 0.009092 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.787563 B = 3078.733190 C = 3521.101260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.128 3.872 3 N -0.410 5.410 4 C -0.351 4.351 5 H 0.079 0.921 6 C 0.007 3.993 7 N -0.854 5.854 8 Si 0.995 3.005 9 H -0.264 1.264 10 H -0.269 1.269 11 H -0.276 1.276 12 C 0.449 3.551 13 O -0.639 6.639 14 C 0.037 3.963 15 C 0.079 3.921 16 N -0.454 5.454 17 C 0.062 3.938 18 C 0.049 3.951 19 N -0.425 5.425 20 H 0.059 0.941 21 H 0.022 0.978 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.090 0.910 25 H 0.279 0.721 26 H 0.165 0.835 27 H 0.220 0.780 28 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.907 -7.798 7.846 11.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.005 3.995 3 N -0.123 5.123 4 C -0.479 4.479 5 H 0.097 0.903 6 C -0.198 4.198 7 N -0.490 5.490 8 Si 0.817 3.183 9 H -0.189 1.189 10 H -0.193 1.193 11 H -0.200 1.200 12 C 0.239 3.761 13 O -0.529 6.529 14 C -0.100 4.100 15 C -0.080 4.080 16 N -0.169 5.169 17 C -0.100 4.100 18 C -0.114 4.114 19 N -0.143 5.143 20 H 0.078 0.922 21 H 0.041 0.959 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.107 0.893 25 H 0.090 0.910 26 H 0.182 0.818 27 H 0.236 0.764 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.837 -7.345 7.605 10.731 hybrid contribution 0.317 0.477 -0.879 1.049 sum -1.520 -6.868 6.726 9.732 Atomic orbital electron populations 1.21774 0.95307 1.00552 0.99766 1.21799 0.95818 0.81021 1.00834 1.44075 1.50402 1.12549 1.05275 1.19848 1.32332 1.12045 0.83722 0.90342 1.26180 0.95618 0.96273 1.01777 1.70151 1.21445 1.29076 1.28291 0.84930 0.78290 0.78785 0.76288 1.18915 1.19339 1.20049 1.17969 0.87941 0.86129 0.84100 1.90543 1.57169 1.18272 1.86914 1.22041 0.99695 0.92987 0.95299 1.23470 0.96278 1.00832 0.87417 1.68574 1.09252 1.10956 1.28077 1.24740 0.93128 0.90532 1.01593 1.24795 0.95889 1.02684 0.88016 1.69110 1.07282 1.07480 1.30455 0.92162 0.95877 0.92332 0.91964 0.89264 0.91018 0.81787 0.76401 0.76710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.03 71.98 0.65 -4.40 15 2 C 0.13 5.95 4.86 86.38 0.42 6.37 15 3 N -0.41 -22.29 2.64 -638.70 -1.68 -23.97 15 4 C -0.35 -20.19 9.35 84.13 0.79 -19.40 15 5 H 0.08 4.83 7.37 -2.92 -0.02 4.81 15 6 C 0.01 0.37 4.92 84.98 0.42 0.79 15 7 N -0.85 -43.12 8.43 21.69 0.18 -42.94 15 8 Si 0.99 41.06 29.60 68.60 2.03 43.09 15 9 H -0.26 -10.41 7.11 99.48 0.71 -9.71 15 10 H -0.27 -10.45 7.11 99.48 0.71 -9.74 15 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 15 12 C 0.45 24.18 7.54 86.83 0.65 24.84 15 13 O -0.64 -38.46 16.02 -3.91 -0.06 -38.53 15 14 C 0.04 1.60 6.48 41.86 0.27 1.88 15 15 C 0.08 2.99 10.77 84.98 0.92 3.91 15 16 N -0.45 -14.00 10.49 -194.05 -2.04 -16.03 15 17 C 0.06 1.38 11.23 84.76 0.95 2.33 15 18 C 0.05 1.18 11.22 84.81 0.95 2.13 15 19 N -0.42 -15.17 4.43 -184.36 -0.82 -15.99 15 20 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 21 H 0.02 0.98 6.60 -2.39 -0.02 0.97 15 22 H 0.06 2.91 5.96 -2.39 -0.01 2.90 15 23 H 0.06 3.07 6.16 -2.39 -0.01 3.06 15 24 H 0.09 3.80 5.36 -2.39 -0.01 3.79 15 25 H 0.28 12.99 8.31 -92.71 -0.77 12.22 15 26 H 0.16 6.38 7.67 -2.91 -0.02 6.36 15 27 H 0.22 2.40 8.06 -2.91 -0.02 2.38 15 28 H 0.22 2.95 8.06 -2.91 -0.02 2.93 15 Total: -1.00 -69.60 240.00 4.82 -64.78 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.18 Total: 11.16 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: 6.02 Total: 18.44 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -4.35 Total: -98.94 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -0.06 Total: -38.53 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -69.60 4.82 -64.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223875687.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.182 kcal (2) G-P(sol) polarization free energy of solvation -69.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds