Wall clock time and date at job start Sun Mar 29 2020 21:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47131 * 2 1 4 4 C 1.50698 * 109.47200 * 119.99812 * 2 1 3 5 5 H 1.08001 * 120.00091 * 120.00267 * 4 2 1 6 6 C 1.37875 * 120.00303 * 300.00328 * 4 2 1 7 7 N 1.31512 * 120.00640 * 179.97438 * 6 4 2 8 8 Si 1.86812 * 119.99830 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47121 * 89.99765 * 8 6 4 10 10 H 1.48500 * 109.47140 * 210.00273 * 8 6 4 11 11 H 1.48498 * 109.46974 * 330.00028 * 8 6 4 12 12 N 1.46497 * 109.47537 * 240.00153 * 2 1 3 13 13 C 1.34776 * 120.00131 * 84.99591 * 12 2 1 14 14 O 1.21516 * 120.00196 * 0.02562 * 13 12 2 15 15 C 1.48148 * 119.99981 * 180.02562 * 13 12 2 16 16 C 1.39443 * 120.09662 * 180.02562 * 15 13 12 17 17 N 1.32079 * 119.87260 * 180.02562 * 16 15 13 18 18 C 1.32142 * 120.07304 * 359.97438 * 17 16 15 19 19 C 1.38724 * 120.19178 * 0.28422 * 18 17 16 20 20 N 1.31797 * 120.12804 * 359.43155 * 19 18 17 21 21 H 1.08999 * 109.47313 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47455 * 300.00124 * 1 2 3 23 23 H 1.09002 * 109.47307 * 59.99895 * 1 2 3 24 24 H 0.96996 * 120.00292 * 179.97438 * 7 6 4 25 25 H 0.97003 * 119.99907 * 265.00178 * 12 2 1 26 26 H 1.07999 * 120.06680 * 0.03607 * 16 15 13 27 27 H 1.08002 * 119.90049 * 180.02562 * 18 17 16 28 28 H 1.08008 * 119.93444 * 179.69733 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1371 -0.8595 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8745 2.6992 10 1 0.9770 1.9954 3.9070 11 1 0.8489 2.1774 1.4923 12 7 2.0183 -0.6905 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8584 1.1609 -2.4116 15 6 2.6404 -0.7167 -3.5668 16 6 2.7749 -0.0229 -4.7689 17 7 3.2147 -0.6501 -5.8449 18 6 3.5272 -1.9325 -5.7824 19 6 3.3895 -2.6268 -4.5893 20 7 2.9567 -2.0073 -3.5095 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.9031 -0.5279 4.4375 25 1 2.2490 -1.6317 -1.1526 26 1 2.5200 1.0253 -4.8201 27 1 3.8870 -2.4426 -6.6638 28 1 3.6416 -3.6761 -4.5441 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224382774.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:38 Heat of formation + Delta-G solvation = 16.950985 kcal Electronic energy + Delta-G solvation = -14386.287838 eV Core-core repulsion = 11823.847774 eV Total energy + Delta-G solvation = -2562.440065 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.21006 -38.83392 -35.15622 -34.47212 -32.40176 -31.73817 -29.80086 -25.52510 -25.14046 -24.54362 -21.70200 -19.84589 -18.27957 -17.56744 -16.95157 -16.26872 -15.45318 -15.14566 -15.06202 -14.34655 -13.87510 -13.35695 -12.94458 -12.82491 -12.22457 -11.91953 -11.74884 -11.44015 -11.27823 -10.84163 -10.21352 -9.99486 -9.61691 -9.53073 -9.26275 -9.07748 -8.77699 -8.23530 -6.21479 -4.24570 0.36799 0.94232 2.99681 3.22902 3.34922 3.38661 3.51652 3.86423 4.06692 4.07984 4.30621 4.39874 4.83781 5.05846 5.12770 5.31309 5.40768 6.15969 6.28243 6.33921 6.51546 6.79812 6.99435 7.14895 7.19957 7.46005 7.53924 8.09522 8.47148 8.68806 8.81815 9.38196 10.90623 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055507 B = 0.006868 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.319120 B = 4075.668129 C = 4407.307046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.234 3.766 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.673 5.673 13 C 0.558 3.442 14 O -0.544 6.544 15 C 0.043 3.957 16 C 0.102 3.898 17 N -0.443 5.443 18 C 0.060 3.940 19 C 0.049 3.951 20 N -0.411 5.411 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.037 0.963 24 H 0.268 0.732 25 H 0.406 0.594 26 H 0.183 0.817 27 H 0.173 0.827 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.032 -3.001 -15.337 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.130 3.870 3 H 0.070 0.930 4 C -0.574 4.574 5 H 0.100 0.900 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.320 5.320 13 C 0.340 3.660 14 O -0.423 6.423 15 C -0.098 4.098 16 C -0.058 4.058 17 N -0.157 5.157 18 C -0.101 4.101 19 C -0.113 4.113 20 N -0.128 5.128 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.242 0.758 26 H 0.200 0.800 27 H 0.190 0.810 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.811 -2.133 -15.084 15.255 hybrid contribution -0.425 0.099 0.245 0.501 sum 0.386 -2.034 -14.838 14.982 Atomic orbital electron populations 1.22454 0.98958 1.01085 0.99479 1.19234 0.90393 0.94785 0.82543 0.93031 1.21018 1.33412 1.14559 0.88392 0.90025 1.24824 0.95476 0.96720 0.95459 1.69863 1.44819 1.40056 0.98049 0.86880 0.80542 0.83579 0.77522 1.20245 1.22094 1.18587 1.46133 1.62362 1.14553 1.08953 1.17689 0.79326 0.86261 0.82711 1.90759 1.51971 1.14926 1.84610 1.22573 0.99253 0.91318 0.96669 1.23844 0.92432 1.01962 0.87531 1.68594 1.08189 1.09445 1.29468 1.24039 0.95476 0.91292 0.99276 1.23871 0.96473 1.01892 0.89088 1.68431 1.05824 1.08365 1.30218 0.92642 0.93211 0.94437 0.92235 0.75834 0.80048 0.80992 0.80739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 8.96 37.15 0.33 -3.29 15 2 C 0.23 5.63 2.15 -69.09 -0.15 5.48 15 3 H 0.05 1.34 6.63 -51.92 -0.34 1.00 15 4 C -0.54 -14.61 9.31 -34.44 -0.32 -14.93 15 5 H 0.08 2.36 7.98 -52.49 -0.42 1.94 15 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 15 7 N -0.89 -26.41 13.96 55.43 0.77 -25.63 15 8 Si 0.89 21.63 24.37 -169.99 -4.14 17.49 15 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 15 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 11 H -0.26 -6.30 6.53 56.52 0.37 -5.93 15 12 N -0.67 -14.05 5.06 -55.79 -0.28 -14.33 15 13 C 0.56 10.98 7.78 -12.19 -0.09 10.89 15 14 O -0.54 -11.98 16.01 5.35 0.09 -11.90 15 15 C 0.04 0.69 6.75 -82.84 -0.56 0.13 15 16 C 0.10 1.44 10.77 -17.00 -0.18 1.26 15 17 N -0.44 -5.56 10.49 -12.71 -0.13 -5.69 15 18 C 0.06 0.58 11.23 -17.24 -0.19 0.38 15 19 C 0.05 0.50 11.22 -17.39 -0.20 0.31 15 20 N -0.41 -5.91 9.71 -9.61 -0.09 -6.00 15 21 H 0.05 1.17 8.14 -51.93 -0.42 0.75 15 22 H 0.05 1.14 3.27 -51.93 -0.17 0.97 15 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 25 H 0.41 7.94 7.89 -40.82 -0.32 7.62 15 26 H 0.18 2.40 7.65 -52.49 -0.40 2.00 15 27 H 0.17 0.93 8.06 -52.49 -0.42 0.50 15 28 H 0.18 1.11 8.06 -52.48 -0.42 0.69 15 LS Contribution 247.88 15.07 3.74 3.74 Total: -1.00 -31.81 247.88 -4.05 -35.85 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -2.53 Total: 4.13 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.46 Total: 2.35 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.26 Total: -51.65 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.49 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.81 -4.05 -35.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224382774.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.806 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds