Wall clock time and date at job start Sun Mar 29 2020 21:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47131 * 2 1 4 4 C 1.50698 * 109.47200 * 119.99812 * 2 1 3 5 5 H 1.08001 * 120.00091 * 120.00267 * 4 2 1 6 6 C 1.37875 * 120.00303 * 300.00328 * 4 2 1 7 7 N 1.31512 * 120.00640 * 179.97438 * 6 4 2 8 8 Si 1.86812 * 119.99830 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47121 * 89.99765 * 8 6 4 10 10 H 1.48500 * 109.47140 * 210.00273 * 8 6 4 11 11 H 1.48498 * 109.46974 * 330.00028 * 8 6 4 12 12 N 1.46497 * 109.47537 * 240.00153 * 2 1 3 13 13 C 1.34776 * 120.00131 * 84.99591 * 12 2 1 14 14 O 1.21516 * 120.00196 * 0.02562 * 13 12 2 15 15 C 1.48148 * 119.99981 * 180.02562 * 13 12 2 16 16 C 1.39443 * 120.09662 * 180.02562 * 15 13 12 17 17 N 1.32079 * 119.87260 * 180.02562 * 16 15 13 18 18 C 1.32142 * 120.07304 * 359.97438 * 17 16 15 19 19 C 1.38724 * 120.19178 * 0.28422 * 18 17 16 20 20 N 1.31797 * 120.12804 * 359.43155 * 19 18 17 21 21 H 1.08999 * 109.47313 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47455 * 300.00124 * 1 2 3 23 23 H 1.09002 * 109.47307 * 59.99895 * 1 2 3 24 24 H 0.96996 * 120.00292 * 179.97438 * 7 6 4 25 25 H 0.97003 * 119.99907 * 265.00178 * 12 2 1 26 26 H 1.07999 * 120.06680 * 0.03607 * 16 15 13 27 27 H 1.08002 * 119.90049 * 180.02562 * 18 17 16 28 28 H 1.08008 * 119.93444 * 179.69733 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1371 -0.8595 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8745 2.6992 10 1 0.9770 1.9954 3.9070 11 1 0.8489 2.1774 1.4923 12 7 2.0183 -0.6905 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8584 1.1609 -2.4116 15 6 2.6404 -0.7167 -3.5668 16 6 2.7749 -0.0229 -4.7689 17 7 3.2147 -0.6501 -5.8449 18 6 3.5272 -1.9325 -5.7824 19 6 3.3895 -2.6268 -4.5893 20 7 2.9567 -2.0073 -3.5095 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.9031 -0.5279 4.4375 25 1 2.2490 -1.6317 -1.1526 26 1 2.5200 1.0253 -4.8201 27 1 3.8870 -2.4426 -6.6638 28 1 3.6416 -3.6761 -4.5441 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224382774.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:37 Heat of formation + Delta-G solvation = -8.814650 kcal Electronic energy + Delta-G solvation = -14387.405120 eV Core-core repulsion = 11823.847774 eV Total energy + Delta-G solvation = -2563.557346 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.24954 -40.36698 -36.96089 -35.52626 -34.37093 -32.88175 -31.51446 -27.27786 -26.56472 -25.54337 -23.31754 -21.52738 -19.82753 -18.65534 -18.30918 -17.72043 -17.18477 -16.49418 -16.44574 -15.65486 -15.32816 -14.95228 -14.81288 -14.15016 -13.89686 -13.68069 -13.26699 -12.81101 -12.75743 -12.39481 -12.15874 -11.68761 -11.32557 -11.30907 -10.88649 -10.52892 -10.17131 -9.97015 -8.38884 -6.46125 -0.65264 0.00117 1.28401 1.36373 1.46141 1.69067 2.12594 2.26112 2.74564 2.96851 2.99079 3.20115 3.40649 3.82170 4.11432 4.33279 4.41892 4.53580 4.55030 4.65433 4.93959 5.25813 5.30274 5.36996 5.52842 6.03173 6.12689 6.51851 6.57335 6.77251 7.10060 7.26091 8.76466 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055507 B = 0.006868 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.319120 B = 4075.668129 C = 4407.307046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.238 3.762 3 H 0.031 0.969 4 C -0.537 4.537 5 H 0.053 0.947 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.941 3.059 9 H -0.258 1.258 10 H -0.291 1.291 11 H -0.259 1.259 12 N -0.678 5.678 13 C 0.560 3.440 14 O -0.575 6.575 15 C 0.014 3.986 16 C 0.101 3.899 17 N -0.456 5.456 18 C 0.087 3.913 19 C 0.058 3.942 20 N -0.435 5.435 21 H 0.064 0.936 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.271 0.729 25 H 0.411 0.589 26 H 0.180 0.820 27 H 0.225 0.775 28 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -3.793 -17.597 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.134 3.866 3 H 0.048 0.952 4 C -0.575 4.575 5 H 0.072 0.928 6 C -0.170 4.170 7 N -0.571 5.571 8 Si 0.768 3.232 9 H -0.183 1.183 10 H -0.218 1.218 11 H -0.183 1.183 12 N -0.326 5.326 13 C 0.344 3.656 14 O -0.455 6.455 15 C -0.125 4.125 16 C -0.057 4.057 17 N -0.171 5.171 18 C -0.076 4.076 19 C -0.106 4.106 20 N -0.153 5.153 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.247 0.753 26 H 0.197 0.803 27 H 0.241 0.759 28 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.654 -2.902 -17.350 17.604 hybrid contribution -0.233 0.158 0.772 0.822 sum 0.421 -2.744 -16.579 16.809 Atomic orbital electron populations 1.22345 0.97320 1.01826 0.99845 1.18922 0.91606 0.93398 0.82663 0.95160 1.21204 1.32683 1.13694 0.89950 0.92844 1.25582 0.96801 0.99523 0.95132 1.69974 1.46540 1.41928 0.98699 0.85971 0.79733 0.80096 0.77438 1.18308 1.21806 1.18332 1.45959 1.63215 1.14720 1.08706 1.18175 0.78150 0.85978 0.83291 1.90720 1.53157 1.16309 1.85336 1.21885 1.02784 0.92424 0.95405 1.23764 0.92478 1.02024 0.87390 1.68705 1.08840 1.11065 1.28470 1.24946 0.91918 0.90033 1.00668 1.24687 0.94349 1.03586 0.88011 1.68348 1.06677 1.07731 1.32503 0.91736 0.93560 0.93219 0.91928 0.75261 0.80332 0.75871 0.76365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.84 8.96 71.98 0.65 -6.19 15 2 C 0.24 11.63 2.15 44.24 0.10 11.72 15 3 H 0.03 1.61 6.63 -2.38 -0.02 1.60 15 4 C -0.54 -29.97 9.31 25.60 0.24 -29.74 15 5 H 0.05 3.20 7.98 -2.91 -0.02 3.18 15 6 C 0.03 1.68 5.45 84.65 0.46 2.14 15 7 N -0.93 -56.30 13.96 21.45 0.30 -56.00 15 8 Si 0.94 44.58 24.37 68.60 1.67 46.25 15 9 H -0.26 -11.40 6.87 99.48 0.68 -10.72 15 10 H -0.29 -13.56 7.11 99.48 0.71 -12.85 15 11 H -0.26 -12.09 6.53 99.48 0.65 -11.44 15 12 N -0.68 -28.79 5.06 -448.71 -2.27 -31.06 15 13 C 0.56 22.34 7.78 86.88 0.68 23.01 15 14 O -0.57 -25.83 16.01 -3.77 -0.06 -25.89 15 15 C 0.01 0.43 6.75 41.89 0.28 0.71 15 16 C 0.10 2.76 10.77 84.95 0.92 3.68 15 17 N -0.46 -10.18 10.49 -194.12 -2.04 -12.22 15 18 C 0.09 1.26 11.23 84.76 0.95 2.21 15 19 C 0.06 0.95 11.22 84.81 0.95 1.90 15 20 N -0.43 -11.76 9.71 -184.33 -1.79 -13.55 15 21 H 0.06 2.68 8.14 -2.39 -0.02 2.66 15 22 H 0.05 2.05 3.27 -2.39 -0.01 2.04 15 23 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.27 15.30 8.31 -92.71 -0.77 14.53 15 25 H 0.41 16.40 7.89 -92.71 -0.73 15.67 15 26 H 0.18 4.78 7.65 -2.91 -0.02 4.76 15 27 H 0.22 0.89 8.06 -2.91 -0.02 0.87 15 28 H 0.22 1.56 8.06 -2.91 -0.02 1.53 15 Total: -1.00 -70.59 247.88 1.41 -69.18 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.38 Total: 13.84 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.22 Total: 9.45 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -5.80 Total: -112.83 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.06 Total: -25.89 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.67 Total: 46.25 kcal Total: -70.59 1.41 -69.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224382774.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.361 kcal (2) G-P(sol) polarization free energy of solvation -70.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds