Wall clock time and date at job start Sun Mar 29 2020 21:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00013 * 2 1 4 4 H 1.48495 * 109.47028 * 270.00074 * 3 2 1 5 5 H 1.48506 * 109.46565 * 30.00281 * 3 2 1 6 6 H 1.48499 * 109.47193 * 149.99602 * 3 2 1 7 7 C 1.37880 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00275 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00011 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47357 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00179 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47298 * 180.02562 * 11 10 9 13 13 C 1.38264 * 119.99747 * 270.02274 * 12 11 10 14 14 C 1.38205 * 119.99484 * 179.97438 * 13 12 11 15 15 C 1.38262 * 120.00498 * 359.81306 * 14 13 12 16 16 C 1.38217 * 119.99351 * 0.42077 * 15 14 13 17 17 C 1.50699 * 119.99610 * 179.81235 * 16 15 14 18 18 O 1.42903 * 109.47152 * 269.72650 * 17 16 15 19 19 C 1.38205 * 119.99984 * 90.00256 * 12 11 10 20 20 H 0.96995 * 120.00254 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46818 * 60.00041 * 9 7 2 22 22 H 1.09000 * 109.47023 * 300.00293 * 9 7 2 23 23 H 1.00895 * 110.99815 * 303.95372 * 10 9 7 24 24 H 1.09003 * 109.46778 * 59.99869 * 11 10 9 25 25 H 1.09004 * 109.47334 * 300.00411 * 11 10 9 26 26 H 1.07992 * 119.99832 * 359.97438 * 13 12 11 27 27 H 1.08001 * 119.99707 * 180.02562 * 14 13 12 28 28 H 1.07994 * 120.00185 * 180.22639 * 15 14 13 29 29 H 1.08997 * 109.47198 * 149.72328 * 17 16 15 30 30 H 1.09008 * 109.47393 * 29.72044 * 17 16 15 31 31 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 32 32 H 1.08005 * 120.00366 * 359.97438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5056 -4.9070 -0.0011 12 6 2.5151 -6.0259 -0.0005 13 6 2.9794 -6.5387 -1.1976 14 6 3.9056 -7.5645 -1.1970 15 6 4.3708 -8.0752 0.0007 16 6 3.9030 -7.5658 1.1973 17 6 4.4068 -8.1253 2.5028 18 8 3.5656 -9.2045 2.9148 19 6 2.9771 -6.5391 1.1967 20 1 -0.4850 0.8400 -0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 2.8406 -3.5486 -0.7819 24 1 0.8810 -4.9812 -0.8914 25 1 0.8803 -4.9818 0.8886 26 1 2.6183 -6.1377 -2.1331 27 1 4.2686 -7.9648 -2.1320 28 1 5.0973 -8.8743 0.0011 29 1 4.3935 -7.3437 3.2623 30 1 5.4264 -8.4886 2.3731 31 1 3.8309 -9.6133 3.7500 32 1 2.6150 -6.1380 2.1318 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227471890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:04 Heat of formation + Delta-G solvation = -33.841177 kcal Electronic energy + Delta-G solvation = -14040.814873 eV Core-core repulsion = 11579.712638 eV Total energy + Delta-G solvation = -2461.102235 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.39017 -36.81013 -35.24891 -32.72276 -31.48593 -30.80284 -27.02684 -25.93872 -24.27919 -21.88695 -21.44534 -20.22286 -17.55171 -16.69402 -16.17056 -15.67266 -15.06901 -14.60259 -14.35489 -13.78485 -13.56403 -13.44593 -12.98304 -12.44289 -12.22693 -11.96891 -11.48900 -11.33612 -10.89718 -10.81777 -10.66093 -10.55367 -10.18499 -9.93502 -9.20560 -8.69653 -8.54589 -8.46230 -7.30406 -6.03298 -4.05397 1.42984 1.58703 3.32087 3.37971 3.42890 3.79641 4.40632 4.45091 4.85451 4.95361 5.09730 5.22180 5.26813 5.32615 5.38613 5.54071 5.68528 5.70365 5.92512 6.09394 6.27186 6.31151 6.59437 6.67913 6.89191 7.15458 7.23846 7.40690 7.47075 7.77801 8.11570 8.38033 8.59348 9.03810 9.59538 11.07845 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042753 B = 0.004919 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.761385 B = 5690.948604 C = 5858.897512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.684 5.684 11 C 0.093 3.907 12 C -0.069 4.069 13 C -0.110 4.110 14 C -0.126 4.126 15 C -0.109 4.109 16 C -0.100 4.100 17 C 0.119 3.881 18 O -0.568 6.568 19 C -0.078 4.078 20 H 0.262 0.738 21 H -0.013 1.013 22 H 0.029 0.971 23 H 0.330 0.670 24 H 0.029 0.971 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.377 0.623 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.927 -16.130 1.806 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.314 5.314 11 C -0.036 4.036 12 C -0.069 4.069 13 C -0.128 4.128 14 C -0.144 4.144 15 C -0.128 4.128 16 C -0.100 4.100 17 C 0.041 3.959 18 O -0.374 6.374 19 C -0.097 4.097 20 H 0.071 0.929 21 H 0.005 0.995 22 H 0.047 0.953 23 H 0.146 0.854 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.224 0.776 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.527 -15.817 1.948 17.624 hybrid contribution 0.361 0.813 -0.440 0.993 sum 7.888 -15.003 1.508 17.017 Atomic orbital electron populations 1.69960 1.06097 1.26820 1.50894 1.24989 0.94875 0.99372 0.95312 0.86474 0.79799 0.82961 0.78040 1.20707 1.21215 1.19757 1.21183 0.93544 0.90185 1.50383 0.91937 1.19593 0.90613 0.87290 0.95885 1.60744 1.21047 1.00538 1.49066 1.20894 0.93354 0.88672 1.00696 1.20037 0.97713 0.96384 0.92779 1.21131 0.97279 0.96587 0.97822 1.21035 0.98108 0.97527 0.97686 1.20919 1.00263 0.99538 0.92052 1.19547 0.99075 0.97439 0.93912 1.20982 0.92438 0.88894 0.93550 1.86584 1.56281 1.50377 1.44146 1.20936 0.95416 0.95113 0.98188 0.92889 0.99502 0.95313 0.85404 0.95306 0.90859 0.86197 0.86237 0.86543 0.92591 0.93010 0.77642 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.78 9.32 -34.44 -0.32 -15.10 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.14 5.44 -4.98 -0.03 5.11 16 10 N -0.68 -15.11 6.48 -116.34 -0.75 -15.86 16 11 C 0.09 1.73 5.81 -4.98 -0.03 1.70 16 12 C -0.07 -1.12 5.39 -104.63 -0.56 -1.69 16 13 C -0.11 -1.60 9.70 -39.58 -0.38 -1.98 16 14 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16 15 C -0.11 -1.40 9.70 -39.58 -0.38 -1.79 16 16 C -0.10 -1.38 5.51 -104.62 -0.58 -1.95 16 17 C 0.12 1.29 7.17 36.01 0.26 1.55 16 18 O -0.57 -6.29 13.64 -35.23 -0.48 -6.77 16 19 C -0.08 -1.22 9.36 -39.59 -0.37 -1.59 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 16 22 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.33 7.02 8.71 -39.29 -0.34 6.68 16 24 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 25 H 0.07 1.37 8.09 -51.93 -0.42 0.95 16 26 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.05 0.46 8.08 -51.92 -0.42 0.04 16 31 H 0.38 2.16 9.12 45.56 0.42 2.58 16 32 H 0.12 1.89 8.06 -52.48 -0.42 1.46 16 LS Contribution 281.99 15.07 4.25 4.25 Total: -1.00 -32.38 281.99 -7.85 -40.23 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -3.69 Total: 3.90 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -2.89 Total: -16.24 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.02 Total: -42.19 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.48 Total: -6.77 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.38 -7.85 -40.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227471890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.392 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds