Wall clock time and date at job start Sun Mar 29 2020 21:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00013 * 2 1 4 4 H 1.48495 * 109.47028 * 270.00074 * 3 2 1 5 5 H 1.48506 * 109.46565 * 30.00281 * 3 2 1 6 6 H 1.48499 * 109.47193 * 149.99602 * 3 2 1 7 7 C 1.37880 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00275 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00011 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47357 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00179 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47298 * 180.02562 * 11 10 9 13 13 C 1.38264 * 119.99747 * 270.02274 * 12 11 10 14 14 C 1.38205 * 119.99484 * 179.97438 * 13 12 11 15 15 C 1.38262 * 120.00498 * 359.81306 * 14 13 12 16 16 C 1.38217 * 119.99351 * 0.42077 * 15 14 13 17 17 C 1.50699 * 119.99610 * 179.81235 * 16 15 14 18 18 O 1.42903 * 109.47152 * 269.72650 * 17 16 15 19 19 C 1.38205 * 119.99984 * 90.00256 * 12 11 10 20 20 H 0.96995 * 120.00254 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46818 * 60.00041 * 9 7 2 22 22 H 1.09000 * 109.47023 * 300.00293 * 9 7 2 23 23 H 1.00895 * 110.99815 * 303.95372 * 10 9 7 24 24 H 1.09003 * 109.46778 * 59.99869 * 11 10 9 25 25 H 1.09004 * 109.47334 * 300.00411 * 11 10 9 26 26 H 1.07992 * 119.99832 * 359.97438 * 13 12 11 27 27 H 1.08001 * 119.99707 * 180.02562 * 14 13 12 28 28 H 1.07994 * 120.00185 * 180.22639 * 15 14 13 29 29 H 1.08997 * 109.47198 * 149.72328 * 17 16 15 30 30 H 1.09008 * 109.47393 * 29.72044 * 17 16 15 31 31 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 32 32 H 1.08005 * 120.00366 * 359.97438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5056 -4.9070 -0.0011 12 6 2.5151 -6.0259 -0.0005 13 6 2.9794 -6.5387 -1.1976 14 6 3.9056 -7.5645 -1.1970 15 6 4.3708 -8.0752 0.0007 16 6 3.9030 -7.5658 1.1973 17 6 4.4068 -8.1253 2.5028 18 8 3.5656 -9.2045 2.9148 19 6 2.9771 -6.5391 1.1967 20 1 -0.4850 0.8400 -0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 2.8406 -3.5486 -0.7819 24 1 0.8810 -4.9812 -0.8914 25 1 0.8803 -4.9818 0.8886 26 1 2.6183 -6.1377 -2.1331 27 1 4.2686 -7.9648 -2.1320 28 1 5.0973 -8.8743 0.0011 29 1 4.3935 -7.3437 3.2623 30 1 5.4264 -8.4886 2.3731 31 1 3.8309 -9.6133 3.7500 32 1 2.6150 -6.1380 2.1318 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227471890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:04 Heat of formation + Delta-G solvation = -57.969154 kcal Electronic energy + Delta-G solvation = -14041.861140 eV Core-core repulsion = 11579.712638 eV Total energy + Delta-G solvation = -2462.148502 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48246 -37.78256 -36.88486 -34.71744 -32.64987 -32.16339 -28.91522 -26.87579 -25.97419 -23.50702 -22.95282 -21.41145 -18.65405 -18.33671 -17.46196 -16.94527 -16.64571 -16.12957 -15.76769 -15.23834 -14.93282 -14.58612 -14.42108 -13.95134 -13.58551 -13.29172 -13.13165 -12.96164 -12.66164 -12.62657 -12.15302 -11.81526 -11.79351 -11.32154 -10.95305 -10.68253 -9.76992 -9.70020 -9.15981 -8.24096 -6.36004 0.34978 0.47712 1.40904 1.42941 1.54893 2.39320 2.73652 3.09138 3.55103 3.69428 3.84731 4.03610 4.14936 4.22501 4.34586 4.37742 4.57424 4.58498 4.66775 4.80768 5.03394 5.11061 5.15963 5.21587 5.52791 5.58395 5.62611 5.72428 5.97963 6.09001 6.39210 6.65623 6.84807 6.93335 7.35082 8.87628 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042753 B = 0.004919 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.761385 B = 5690.948604 C = 5858.897512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.207 3.793 10 N -0.681 5.681 11 C 0.098 3.902 12 C -0.090 4.090 13 C -0.119 4.119 14 C -0.121 4.121 15 C -0.107 4.107 16 C -0.108 4.108 17 C 0.119 3.881 18 O -0.589 6.589 19 C -0.097 4.097 20 H 0.266 0.734 21 H -0.036 1.036 22 H 0.001 0.999 23 H 0.335 0.665 24 H 0.030 0.970 25 H 0.063 0.937 26 H 0.127 0.873 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.399 0.601 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.038 -16.932 1.545 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.079 3.921 10 N -0.312 5.312 11 C -0.031 4.031 12 C -0.090 4.090 13 C -0.138 4.138 14 C -0.139 4.139 15 C -0.125 4.125 16 C -0.109 4.109 17 C 0.042 3.958 18 O -0.398 6.398 19 C -0.116 4.116 20 H 0.075 0.925 21 H -0.019 1.019 22 H 0.019 0.981 23 H 0.152 0.848 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.145 0.855 27 H 0.169 0.831 28 H 0.165 0.835 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.249 0.751 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.651 -16.653 1.700 19.322 hybrid contribution -0.297 0.936 -0.340 1.039 sum 9.355 -15.717 1.360 18.340 Atomic orbital electron populations 1.70088 1.07862 1.28123 1.51365 1.25973 0.95801 1.03451 0.94410 0.85290 0.78439 0.77738 0.78567 1.19526 1.20587 1.18908 1.21524 0.93806 0.91339 1.50920 0.91769 1.19251 0.90648 0.88806 0.93375 1.60609 1.20349 1.00868 1.49363 1.20837 0.94039 0.87993 1.00219 1.19840 0.98456 0.96533 0.94166 1.21291 0.97867 0.97326 0.97310 1.21406 0.96873 0.96364 0.99266 1.21348 1.00072 0.99621 0.91470 1.19939 0.98203 0.96704 0.96011 1.21008 0.93388 0.89155 0.92228 1.86514 1.56948 1.50457 1.45892 1.21001 0.96664 0.96401 0.97545 0.92516 1.01884 0.98120 0.84779 0.95217 0.91811 0.85496 0.83101 0.83479 0.92307 0.90314 0.75051 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.98 44.71 29.54 68.60 2.03 46.74 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.54 -31.43 9.32 25.60 0.24 -31.19 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 9 C 0.21 11.48 5.44 85.56 0.47 11.95 16 10 N -0.68 -31.06 6.48 -521.99 -3.38 -34.44 16 11 C 0.10 3.79 5.81 85.56 0.50 4.29 16 12 C -0.09 -2.95 5.39 -19.87 -0.11 -3.06 16 13 C -0.12 -3.36 9.70 22.27 0.22 -3.14 16 14 C -0.12 -2.79 10.05 22.27 0.22 -2.57 16 15 C -0.11 -2.42 9.70 22.27 0.22 -2.20 16 16 C -0.11 -2.81 5.51 -19.87 -0.11 -2.92 16 17 C 0.12 2.32 7.17 71.24 0.51 2.83 16 18 O -0.59 -11.78 13.64 -148.98 -2.03 -13.81 16 19 C -0.10 -3.05 9.36 22.27 0.21 -2.84 16 20 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 21 H -0.04 -2.15 8.14 -2.39 -0.02 -2.17 16 22 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 23 H 0.34 14.55 8.71 -89.70 -0.78 13.77 16 24 H 0.03 1.13 8.09 -2.39 -0.02 1.11 16 25 H 0.06 2.53 8.09 -2.38 -0.02 2.51 16 26 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 27 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 28 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.06 1.09 8.09 -2.39 -0.02 1.07 16 30 H 0.08 1.11 8.08 -2.38 -0.02 1.09 16 31 H 0.40 3.66 9.12 -74.06 -0.68 2.98 16 32 H 0.11 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -69.88 281.99 -0.62 -70.50 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -0.34 Total: 16.22 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 2.82 Total: -28.27 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -3.10 Total: -91.38 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -2.03 Total: -13.81 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -69.88 -0.62 -70.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227471890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.534 kcal (2) G-P(sol) polarization free energy of solvation -69.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds