Wall clock time and date at job start Sun Mar 29 2020 21:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.47131 * 2 1 4 4 C 1.36876 * 120.00185 * 80.57921 * 3 2 1 5 5 H 1.07997 * 120.00063 * 175.28398 * 4 3 2 6 6 C 1.39049 * 119.99788 * 355.28930 * 4 3 2 7 7 N 1.31366 * 120.00100 * 11.93677 * 6 4 3 8 8 Si 1.86800 * 119.99753 * 191.93953 * 6 4 3 9 9 H 1.48501 * 109.47050 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46989 * 119.99615 * 8 6 4 11 11 H 1.48494 * 109.47153 * 239.99689 * 8 6 4 12 12 C 1.34774 * 119.99785 * 260.57845 * 3 2 1 13 13 O 1.21591 * 119.99927 * 181.58373 * 12 3 2 14 14 C 1.47716 * 119.99994 * 1.58292 * 12 3 2 15 15 C 1.40022 * 120.94431 * 216.57041 * 14 12 3 16 16 N 1.32130 * 118.91554 * 179.75204 * 15 14 12 17 17 C 1.31885 * 120.97231 * 0.24749 * 16 15 14 18 18 N 1.31866 * 122.11216 * 0.02845 * 17 16 15 19 19 C 1.32133 * 120.97707 * 359.97045 * 18 17 16 20 20 H 1.08997 * 109.47032 * 163.18171 * 1 2 3 21 21 H 1.09006 * 109.46799 * 283.18171 * 1 2 3 22 22 H 1.08995 * 109.47029 * 43.17824 * 1 2 3 23 23 H 1.09000 * 109.47034 * 239.99696 * 2 1 3 24 24 H 1.08997 * 109.47147 * 120.00035 * 2 1 3 25 25 H 0.97003 * 119.99846 * 180.02562 * 7 6 4 26 26 H 1.08002 * 120.54722 * 0.02562 * 15 14 12 27 27 H 1.08002 * 118.93806 * 180.02562 * 17 16 15 28 28 H 1.07998 * 120.54258 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0636 2.0911 1.1694 5 1 2.4940 3.0815 1.1835 6 6 1.5555 1.5371 2.3391 7 7 1.2493 0.2603 2.3822 8 14 1.3083 2.6083 3.8493 9 1 1.7272 3.9998 3.5431 10 1 -0.1255 2.5962 4.2355 11 1 2.1273 2.0806 4.9700 12 6 2.4231 1.9528 -1.1515 13 8 2.8554 3.0892 -1.1469 14 6 2.3416 1.1986 -2.4190 15 6 3.3281 1.3358 -3.4031 16 7 3.2178 0.6382 -4.5199 17 6 2.1964 -0.1728 -4.7155 18 7 1.2427 -0.3279 -3.8181 19 6 1.2728 0.3305 -2.6729 20 1 -0.3633 -0.9837 -0.2973 21 1 -0.3633 0.2344 1.0007 22 1 -0.3633 0.7494 -0.7032 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 0.8945 -0.1261 3.1981 26 1 4.1678 1.9975 -3.2502 27 1 2.1392 -0.7276 -5.6403 28 1 0.4878 0.1984 -1.9431 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230874251.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:57 Heat of formation + Delta-G solvation = 28.202343 kcal Electronic energy + Delta-G solvation = -15056.290324 eV Core-core repulsion = 12494.338155 eV Total energy + Delta-G solvation = -2561.952169 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.20803 -40.20252 -37.32917 -34.90480 -34.07969 -32.80372 -31.46075 -27.60964 -25.57178 -25.48521 -23.97984 -21.49315 -19.15493 -18.78575 -18.63392 -17.87448 -16.76879 -16.19669 -15.69052 -15.50584 -15.29877 -14.80415 -14.60036 -14.00425 -13.51988 -13.29353 -12.82049 -12.78898 -12.55849 -12.19989 -12.08420 -12.02428 -11.66352 -10.99879 -10.72831 -10.45281 -10.31542 -9.85474 -8.20895 -5.96391 -0.42159 -0.04825 1.36335 1.44978 1.57227 1.93876 2.21920 2.71854 2.88586 3.04943 3.15972 3.21277 3.51709 3.74877 4.01470 4.29538 4.45364 4.70402 4.76378 4.82013 5.02369 5.30418 5.33072 5.60573 5.74147 5.80109 6.01944 6.47253 6.96770 7.06074 7.33706 7.88271 8.55460 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049476 B = 0.009005 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.800760 B = 3108.647024 C = 3532.586952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.088 3.912 3 N -0.427 5.427 4 C -0.335 4.335 5 H 0.081 0.919 6 C 0.007 3.993 7 N -0.867 5.867 8 Si 0.994 3.006 9 H -0.279 1.279 10 H -0.266 1.266 11 H -0.270 1.270 12 C 0.460 3.540 13 O -0.635 6.635 14 C -0.218 4.218 15 C 0.183 3.817 16 N -0.527 5.527 17 C 0.291 3.709 18 N -0.526 5.526 19 C 0.154 3.846 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.035 0.965 23 H 0.048 0.952 24 H 0.129 0.871 25 H 0.278 0.722 26 H 0.175 0.825 27 H 0.240 0.760 28 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 -5.003 -5.332 7.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 N -0.142 5.142 4 C -0.463 4.463 5 H 0.099 0.901 6 C -0.195 4.195 7 N -0.506 5.506 8 Si 0.817 3.183 9 H -0.204 1.204 10 H -0.191 1.191 11 H -0.195 1.195 12 C 0.249 3.751 13 O -0.525 6.525 14 C -0.226 4.226 15 C 0.016 3.984 16 N -0.240 5.240 17 C 0.004 3.996 18 N -0.239 5.239 19 C -0.012 4.012 20 H 0.095 0.905 21 H 0.086 0.914 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.146 0.854 25 H 0.089 0.911 26 H 0.192 0.808 27 H 0.256 0.744 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -2.006 -5.162 -5.983 8.153 hybrid contribution 0.068 1.079 1.535 1.878 sum -1.938 -4.082 -4.448 6.341 Atomic orbital electron populations 1.22165 0.95331 1.00622 1.02238 1.22507 0.95728 0.82092 1.03078 1.44021 1.51627 1.12753 1.05774 1.19831 1.39586 1.00521 0.86347 0.90136 1.25981 0.95070 0.97336 1.01135 1.69849 1.41140 1.10605 1.28998 0.84862 0.78585 0.77888 0.76942 1.20365 1.19123 1.19515 1.17951 0.86334 0.86999 0.83810 1.90571 1.54486 1.20593 1.86840 1.21793 1.00475 1.02180 0.98139 1.23408 0.95963 0.92396 0.86657 1.68541 1.25431 1.08581 1.21453 1.25950 0.83845 0.91227 0.98575 1.68558 1.28575 1.24214 1.02598 1.24537 0.95741 0.87154 0.93799 0.90459 0.91394 0.94608 0.93409 0.85424 0.91059 0.80805 0.74437 0.79280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 8.19 71.98 0.59 -4.93 15 2 C 0.09 3.77 4.88 86.38 0.42 4.19 15 3 N -0.43 -21.48 2.64 -638.96 -1.69 -23.17 15 4 C -0.34 -18.08 9.49 84.10 0.80 -17.28 15 5 H 0.08 4.72 7.19 -2.91 -0.02 4.70 15 6 C 0.01 0.36 5.14 84.96 0.44 0.79 15 7 N -0.87 -40.20 7.67 21.68 0.17 -40.03 15 8 Si 0.99 39.49 29.57 68.60 2.03 41.52 15 9 H -0.28 -11.59 7.11 99.48 0.71 -10.89 15 10 H -0.27 -10.07 7.11 99.48 0.71 -9.36 15 11 H -0.27 -10.29 7.11 99.48 0.71 -9.58 15 12 C 0.46 23.06 7.36 86.75 0.64 23.70 15 13 O -0.63 -36.40 16.49 -4.00 -0.07 -36.47 15 14 C -0.22 -8.86 5.22 -19.91 -0.10 -8.96 15 15 C 0.18 6.61 10.94 85.08 0.93 7.54 15 16 N -0.53 -16.54 10.42 -198.92 -2.07 -18.61 15 17 C 0.29 7.90 12.27 180.84 2.22 10.12 15 18 N -0.53 -16.43 10.42 -198.93 -2.07 -18.50 15 19 C 0.15 5.48 8.73 85.08 0.74 6.23 15 20 H 0.08 2.39 8.14 -2.39 -0.02 2.37 15 21 H 0.07 2.84 6.15 -2.38 -0.01 2.83 15 22 H 0.04 1.34 6.70 -2.39 -0.02 1.32 15 23 H 0.05 1.87 5.12 -2.39 -0.01 1.86 15 24 H 0.13 5.96 5.41 -3.04 -0.02 5.94 15 25 H 0.28 11.93 8.31 -92.71 -0.77 11.16 15 26 H 0.17 6.05 8.06 -2.91 -0.02 6.03 15 27 H 0.24 4.03 8.06 -2.91 -0.02 4.00 15 28 H 0.19 6.62 3.18 -2.91 -0.01 6.61 15 Total: -1.00 -61.03 237.07 4.16 -56.87 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 1.19 Total: 16.99 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 6.67 Total: 21.40 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -5.67 Total: -100.31 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.07 Total: -36.47 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -61.03 4.16 -56.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230874251.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.075 kcal (2) G-P(sol) polarization free energy of solvation -61.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds